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Oryza sativa
cluster # 14493 cluster # 14493       Sequences # 16       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14493#0 length = 1153 sequences # 9  
consensus_14493#1 length = 1016 sequences # 3  
 consensus_14493#2 length = 630 sequences # 3  
consensus_14493#3 length = 411 sequences # 1  
consensusID : consensus_14493#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1153
fasta sequence 
                              [AGAGAAGCTTTGCTCGTCTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGTGCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCTCGACATCGAGTACCACCACAACATGTATGC-GTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAGATGATAATGTTTGTGTTGGAGGTTGGGTGCACTCTTGGATTAGTATTTCGATGTAGTTTAAAAAAA]

[+] EMBL CF327574             [AGAGAAGCTTTGCTCGTCTCCTCCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTTTTCCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGTGACAGCTACGTGCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCTCGACATCGAGTACCACCACAACATGTATGC GTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGGTTCTCGACTGGCTTCGGTGTTTCT GGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGGAGCAGGAAAAGTTGGATTTGACATCCTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSR28191A            [           GCTCGTCTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTTGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACA NTACGTGCGCCGCCCCGACCAGGCGGAG GCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGNTCTCGACATCGAGTACCANCACANCATGTATGCTTTNGTACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C28945               [           GCTCGTTTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTCGACGTCCGCCCGGNTGGAGGCGGTCGTNGTGTTCAACATCTGCAACA NTACGTGCGCCGCCCCGACCAGGCGGA NGCGTNATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCG AACTCCTACGTCGTNCCCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU096495             [            CTCGTCTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTNGTGTTCAACATCTGCGACAGCTACGTGCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCTCGACATCGAGTACCACCACAACATGTATGC GTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK070215             [                   CCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGTGCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCTCGACATCGAGTACCACCACAACATGTATGC GTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAGATGATAATGTTTGTGTTGGA                                              ]
[+] EMBL AK104207             [                    CTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGTGCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCTCGACATCGAGTACCACCACAACATGTATGC GTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGT                                                                       ]
[+] EMBL CF337288             [                       CCTTCCGCCGCCGCCGAAGCAGAAGGGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCCTCCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGTGCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCTCGACATCGAGTACCACCACAACATGTATGC GTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK104554             [                             GCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGTGCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCTCGACATCGAGTACCACCACAACATGTATGC GTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATG                                                                        ]
[-] EMBL CF317835             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGATTCCCCTTGATCTGAGGATGCTTGAAACAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTCGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAGATGATAATGTTTGTGTTGGAGGTTGGGTGCACTCTTGGATTAGTATTTCGATGTAGTTTAAAAAAA]




>consensus_14493#0
AGAGAAGCTTTGCTCGTCTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGA
GAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTAC
CTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGT
GCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGA
CGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGT
TGCTCTCGACATCGAGTACCACCACAACATGTATGCGTCGCACCACAAGGTCAACCCCAA
GGAAGTCATTGTTGGATGGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTAT
CCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTT
CACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAG
GCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAA
AGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGG
AATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGA
TGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGC
TGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGAT
TCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGC
CGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGA
GTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATAT
GATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCAT
GTTTCAGATGATAATGTTTGTGTTGGAGGTTGGGTGCACTCTTGGATTAGTATTTCGATG
TAGTTTAAAAAAA

consensusID : consensus_14493#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1016
fasta sequence 
                              [GAGTAGAAAGTCTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGTGCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAAAAAAAAAAAAAN]

[+] EMBL CF333203             [GAGTAGAAAGTCTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGTGCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTT                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL C98081               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAAAAAAAAAAAAAN]
[+] EMBL AU058043             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAAAAAAAAAAAAAa]




>consensus_14493#1
GAGTAGAAAGTCTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAA
AGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTC
GACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGTGCGCCG
CCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCAC
CGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCT
CGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAG
TACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCA
AAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAG
AGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAAT
CTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGC
TGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAG
CACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATTGT
CACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGT
ACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCC
AAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTG
TTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGT
ACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAAAAAAAAAAAAAN

consensusID : consensus_14493#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 630
fasta sequence 
                              [AGAGGACGAGACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGGGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATG-CCAAAATTGTCACCAGCTGC-TTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGAACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAGATGATCAAAAAAAA]

[-] EMBL CA763542             [AGAGGACGAGACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGGGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATG CCAAAATTGTCACCAGCTGC TTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGAACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAGATGATCAAAAAAAA]
[-] EMBL CF327575             [                                                                          TTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGGAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATG CCAAAATTGTCACCAGCTGC TTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGCGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAGATGATAAAAAA   ]
[+] EMBL C73574               [                                                                            GCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCCAAAATTGTCACCAGCTGCTTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCATGGGNGGACCTGg                                                                                                                                                                                                                                        ]




>consensus_14493#2
AGAGGACGAGACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCT
TGGGGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGA
AGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGA
TCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAA
ATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCAT
CTCTGATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAA
TGACAGGATTCAGGATAATCTTGCACTGGTGAACCTGTCAAGCATCACAAGGACACAGAT
TAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAG
CATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAA
TTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGA
AACCATCATGTTTCAGATGATCAAAAAAAA

consensusID : consensus_14493#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence 
                              [TCGGTCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGNCCCCGTTCTCCTCTNNCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACANTACGTGCGCNNGCCCGACCAGGCGGANGCGTCATCGGNACCCTNCTCGGCTCCGTNCTGCCCGACGGCACCGTCCATGTGCGCAACTCCTACGTCGTACCCNACAACGAGTCCCNCGACCAGGTTGCTCTTGACATNGAGTACCANCACANCATGTATGCGTTGGACCANAAGGTNAACCCNAAGGGAAGTCATTGTTGGGATGGTTNTNGATTGGTTTTGGGTGTTTNTGGGGGAAGTACGGTTATNCATGATTTTTAATT]

[+] EMBL OS0597A              [TCGGTCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGNCCCCGTTCTCCTCTNNCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACANTACGTGCGCNNGCCCGACCAGGCGGANGCGTCATCGGNACCCTNCTCGGCTCCGTNCTGCCCGACGGCACCGTCCATGTGCGCAACTCCTACGTCGTACCCNACAACGAGTCCCNCGACCAGGTTGCTCTTGACATNGAGTACCANCACANCATGTATGCGTTGGACCANAAGGTNAACCCNAAGGGAAGTCATTGTTGGGATGGTTNTNGATTGGTTTTGGGTGTTTNTGGGGGAAGTACGGTTATNCATGATTTTTAATT]




>consensus_14493#3
TCGGTCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCT
GCGGCGGAGGNCCCCGTTCTCCTCTNNCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAG
GCGGTCGTCGTGTTCAACATCTGCGACANTACGTGCGCNNGCCCGACCAGGCGGANGCGT
CATCGGNACCCTNCTCGGCTCCGTNCTGCCCGACGGCACCGTCCATGTGCGCAACTCCTA
CGTCGTACCCNACAACGAGTCCCNCGACCAGGTTGCTCTTGACATNGAGTACCANCACAN
CATGTATGCGTTGGACCANAAGGTNAACCCNAAGGGAAGTCATTGTTGGGATGGTTNTNG
ATTGGTTTTGGGTGTTTNTGGGGGAAGTACGGTTATNCATGATTTTTAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14493#0      ------------------------------------------------------------
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      GAGTAGAAAGTCTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAA 60
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      ------------------------------------------------------------
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      AGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTC 120
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      ------------------------------------------------------------
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      GACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGTGCGCCG 180
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      ------------------------------------------------------------
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      CCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCAC 240
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      ------------------------------------------------------------
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      CGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCT 300
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      ------------------------------------------------------------
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      CGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAG 360
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      ------------------------------------------------------------
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      TACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCA 420
consensus_14493#2      -------------------------AGAGGACGAG---ACAAGGGGCGATGCTTCAATCA 32
                                                                                   

consensus_14493#0      --------------------------------------------AGAGAAGCTTTGCTCG 16
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      AAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAG 480
consensus_14493#2      AAGCCTATATCTCATCCAACCTGTCTCTTGGGGATAGGCACCTTGCTGCGCAGTTCCAAG 92
                                                                                   

consensus_14493#0      TCTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTG 76
consensus_14493#3      ---------TCGGTCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTG 51
consensus_14493#1      AGATTCCCCTTGATCTGAGGATGC--TTGAAGCAGGAAAAGTTGGATTTGACATCCTGAA 538
consensus_14493#2      AGATTCCCCTTGATCTGAGGATGC--TTGAAGCAGGAAAAGTTGGATTTGACATCCTGAA 150
                                *    * *  *  *     ****  * * ***   **    * *  *    

consensus_14493#0      G-CGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTCGACGTCCGC 135
consensus_14493#3      G-CGATGGCTGCGGCGGAGGNCCCCGTTCTCCTCTNNCCCTCTACCTCGTCGACGTCCGC 110
consensus_14493#1      ATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAA 598
consensus_14493#2      ATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAA 210
                         * *    ** ** * **  ****  *   **             ** ** * *     

consensus_14493#0      CCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGT-GCGCCGCCCCGACC 194
consensus_14493#3      CCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAN-TACGT-GCGCNNGCCCGACC 168
consensus_14493#1      GCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGT 658
consensus_14493#2      GCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGT 270
                        * *   *      * * ** * ** ***  *  *      * ** * *      **   

consensus_14493#0      AGG--CGGAGCGCGTCATCGGCA--CCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTC 250
consensus_14493#3      AGG--CGGAN-GCGTCATCGGNA--CCCTNCTCGGCTCCGTNCTGCCCGACGGCACCGTC 223
consensus_14493#1      AGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATT 718
consensus_14493#2      AGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATT 330
                       **   ****       ** ** *    *  *** * * *        * * * **   * 

consensus_14493#0      CATGTCCGCAACTCCT-ACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTGCTCT--C 307
consensus_14493#3      CATGTGCGCAACTCCT-ACGTCGTACCCNACAACGAGTCCCNCGACCAGGTTGCTCT--T 280
consensus_14493#1      GTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGT 778
consensus_14493#2      GTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGT 390
                              **  **  * **    *   * *  **  *   *  **  *  **** **   

consensus_14493#0      GA---CATCGAGTACCACCACAACATGTATGCGT-CGCACCACAAGGTCAACCCCAAGG- 362
consensus_14493#3      GA---CATNGAGTACCANCACANCATGTATGCGT-TGGACCANAAGGTNAACCCNAAGGG 336
consensus_14493#1      GTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGC 838
consensus_14493#2      GAACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGC 450
                       *      *  ** * **  *   **   **  *      * * *** * *** *    * 

consensus_14493#0      --AAGTC--ATTGTTGG-ATGGTTCTCGACTGGCTTCGG-TGTTTCTGGGGGAAGTACGC 416
consensus_14493#3      --AAGTC--ATTGTTGGGATGGTTNTNGATTGGTTTTGGGTGTTTNTGGGGGAAGTACGG 392
consensus_14493#1      CCAAATCCTGTAATTTCCATGTAGTTGGA--GCATCTGGGAGTCTG-ACTTAAAATGCTG 895
consensus_14493#2      CCAAATCCTGTAATTTCCATGTAGTTGGA--GCATCTGGGAGTCTG-ACTTAAAATGCTG 507
                         ** **   *  **   ***    * **  *  *  **  ** *       ** * *  

consensus_14493#0      TTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTG 476
consensus_14493#3      TTATNCATGATTTTTAATT----------------------------------------- 411
consensus_14493#1      TTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATT 955
consensus_14493#2      TTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATT 567
                       ** *   ** **** * *                                          

consensus_14493#0      GGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAG 536
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      TTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAAAAAAAAAAAAA 1015
consensus_14493#2      TTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAGATGATCAAAAA 627
                                                                                   

consensus_14493#0      ATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAG 596
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      N----------------------------------------------------------- 1016
consensus_14493#2      AAA--------------------------------------------------------- 630
                                                                                   

consensus_14493#0      GAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGG 656
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      ------------------------------------------------------------
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      AAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATG 716
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      ------------------------------------------------------------
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      TTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTG 776
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      ------------------------------------------------------------
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      ATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACA 836
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      ------------------------------------------------------------
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      GGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCA 896
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      ------------------------------------------------------------
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      TAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCT 956
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      ------------------------------------------------------------
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      GGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGG 1016
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      ------------------------------------------------------------
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      ATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCA 1076
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      ------------------------------------------------------------
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      TCATGTTTCAGATGATAATGTTTGTGTTGGAGGTTGGGTGCACTCTTGGATTAGTATTTC 1136
consensus_14493#3      ------------------------------------------------------------
consensus_14493#1      ------------------------------------------------------------
consensus_14493#2      ------------------------------------------------------------
                                                                                   

consensus_14493#0      GATGTAGTTTAAAAAAA 1153
consensus_14493#3      -----------------
consensus_14493#1      -----------------
consensus_14493#2      -----------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)