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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14512#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1484 fasta sequence
[GGTTTTCCAGTACAAAAACCAAAAGAAAGAGCCCCGCGACCTAGTGGAGAGGCGGTACACTGGTGGTGGTGGGGGTGGTGTGGTGGGGGACGCGACGCGACGAGATGCCTCGGGAGACGCCGCCGCCGCCGCCGCCGGAGGGCGGCGAGGTGCACGAGGTGGTGGAGGGGGAGGACGGGCAGGCGGAGGACCAGGAGGAGAGGTGGGCGCGGCTGCTGCCGGAGCTGATGTCCGAGGTGGTGCGGCGCGTGGAGGCGTCCGGGGGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCTGCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC-AAACTTCAAAATATATGATAGCAAGCCACCATATG-ATGGCG-CT-AAAG-CATCAAGT-AGTCGA-TCCAGT--CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT-CCAGAGGT-CCTAGGAGAATGT-ATTGTGCACTTGAGTGCCCTTCAACT-CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA-ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT-CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT-GGTAAGGTCGAT-GAC-AATATCTTCACGATGGATTA-CCGGCAGCCACTCTC-AGCGTTTC-AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT--TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTTTAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAA]
[+] EMBL AK070401 [GGTTTTCCAGTACAAAAACCAAAAGAAAGAGCCCCGCGACCTAGTGGAGAGGCGGTACACTGGTGGTGGTGGGGGTGGTGTGGTGGGGGACGCGACGCGACGAGATGCCTCGGGAGACGCCGCCGCCGCCGCCGCCGGAGGGCGGCGAGGTGCACGAGGTGGTGGAGGGGGAGGACGGGCAGGCGGAGGACCAGGAGGAGAGGTGGGCGCGGCTGCTGCCGGAGCTGATGTCCGAGGTGGTGCGGCGCGTGGAGGCGTCCGGGGGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCTGCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCTTCAACT CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT GGTAAGGTCGAT GAC AATATCTTCACGATGGATTA CCGGCAGCCACTCTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTTTAc ]
[+] EMBL AK099104 [ GGCGGTACACTGGTGGTGGTGGGGGTGGTGTGGTGGGGGACGCGACGCGACGAGATGCCTCGGGAGACGCCGCCGCCGCCGCCGCCGGAGGGCGGCGAGGTGCACGAGGTGGTGGAGGGGGAGGACGGGCAGGCGGAGGACCAGGAGGAGAGGTGGGCGCGGCTGCTGCCGGAGCTGATGTCCGAGGTGGTGCGGCGCGTGGAGGCGTCCGGGGGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCTGCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGACAAAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCTTCAACT CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT GGTAAGGTCGAT GAC AATATCTTCACGATGGATTA CCGGCAGCCACTCTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAG ]
[+] EMBL CB659350 [ TGCCTCGGGAGACGCCGCCGCCGCCGCCGCCGGAGGGCGGCGAGGTGCACGAGGTGGTGGAGGGGGAGGACGGGCAGGCGGAGGACCAGGAGGAGAGGTGGGCGCGGCTGCTGCCGGAGCTGATGTCCGAGGTGGTGCGGCGCGTGGAGGCGTCCGGGGGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCTGCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTTTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCT ]
[+] EMBL CB659537 [ GGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCTGCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCTTCAACT CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAA ]
[+] EMBL C99544 [ GGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACNTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CTAAAAG CATCAA T AGTCG ]
[-] EMBL AU223138 [ GCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGA TTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTA ]
[-] EMBL AU101958 [ TCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGA TTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGT CCCT ]
[-] EMBL AU097270 [ CCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGA TTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AACTTCAAAATATATGATAGCANGCACCCATATGAATGGCGCCT AAAGCCATCAAGTAAGTCGATTCCAGTTCCGGCGT ]
[-] EMBL CB659351 [ CATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTTTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCTTCAACT CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT GGTAAGGTCGAT GAC AATATCTTCACGATGGATTA CCGGCAGCCACTCTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTT ]
[-] EMBL CB659538 [ ACATGGGGAAACTGAGATCTGATTTTGGGGGGAC AACTTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCTTCAACT CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT GGTAAGGTCGAT GAC AATATCTTCACGATGGATTA CCGGCAGCCACTCTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTT ]
[-] EMBL CA763124 [ AAATCCCAGAGGTGCTTGGGAGAATGTCATTGTGCACCGGAGTGCCCTTCCCCTCCAGGAGCCATGGGAAAACCGTCTAAAGGCGAAGTTCAGAAACCCCCACAGGGAACCCCGTTTTAAGAAACAAAGCTCCCCCGTGGGCATGAGCACGTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGGTGCTGCTGATCCCAATGATCCTGGTAGCTCGAAGGATGAGGAAACAGTTTTGCTGCAGTTT GGTAAGGTCGAT GAC AATATCTTCCCGATGGATTA CCGGCAGCCACTCTT AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGAGGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCGTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGTTGTGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTTTAAAAAAAAAAAAAAAA ]
[+] EMBL C99543 [ GCTGGTGCTTGAACTTCCANGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT GGTAAGGTCGNT GAC AATATNTTCACGATGGATTA CCGGCAGCCACTNTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTNATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATNNCCTGATGATACCTTTTTTAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAA]
[-] EMBL OSS3965A [ CGAAGGATGAGGAAACAGTCCTGTTGCAGTTT GGTAAGGCCGAT GAC AATACCTTCACGATGNATTA CCGGCAGCNACTCTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCT ]
[-] EMBL OSS3332A [ GAANCAGTCCTGTTGCAGTTTGGGTAAGGTCGATGGACAAATANCTTCACGATGGATTACCCGGCAGCCACTCTCAAGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCT ]
[-] EMBL OSS2717A [ ATTA CCGGCAGCCACTCTC AGCGTTTCAAAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCT ]
consensusID : consensus_14512#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1108 fasta sequence
[TTCAGTTTTTATAACTTCTCTTGTTCCTTTATTTGTGCTCAAAAGTATTTCATTTATTTCCTTGCAATTGATTGCTGTGTAAGTCTCACGGCAGTTCCTTTGAGACATTATTTCACTGTCCTAGATTAGGTTATGGCCTTATTTGATTTGATTCCCCTTATGGTGTGCAGATAATTTGGACTGGTTGGGTATCTGTTGTGTTTTCGTGCTTGTATTGGATTTTTGTTGTCTTAATTTTTATTCATTGGTATTATTGTGCTTCTGTTTAGATCTGATTTTTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAATCCAGAGGTCCTAGGAGAATGTATTGTGCACTTGAGTGCCCTTCAACTCAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAAACCCACAGGGAACACAGTTCTAAGAAACAAAGCTCCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTTGGTAAGGTCGATGACAATATCTTCACGATGGATTACCGGCAGCCACTCTCAGCGTTTCAAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGACTTAGCTCCGAGAAGGAAATTGTGTTGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTTTACTT]
[+] EMBL AK072815 [TTCAGTTTTTATAACTTCTCTTGTTCCTTTATTTGTGCTCAAAAGTATTTCATTTATTTCCTTGCAATTGATTGCTGTGTAAGTCTCACGGCAGTTCCTTTGAGACATTATTTCACTGTCCTAGATTAGGTTATGGCCTTATTTGATTTGATTCCCCTTATGGTGTGCAGATAATTTGGACTGGTTGGGTATCTGTTGTGTTTTCGTGCTTGTATTGGATTTTTGTTGTCTTAATTTTTATTCATTGGTATTATTGTGCTTCTGTTTAGATCTGATTTTTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAATCCAGAGGTCCTAGGAGAATGTATTGTGCACTTGAGTGCCCTTCAACTCAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAAACCCACAGGGAACACAGTTCTAAGAAACAAAGCTCCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTTGGTAAGGTCGATGACAATATCTTCACGATGGATTACCGGCAGCCACTCTCAGCGTTTCAAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGACTTAGCTCCGAGAAGGAAATTGTGTTGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTTTACTT]
consensusID : consensus_14512#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence
[GTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAATTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAATCCAGNNNTCCTNNNNNNATGTATTGTGCACTTGAGTGCCCTTCAACTCANGNNNCATNNNNNNNNCTGTCT]
[+] EMBL CF197187 [GTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAATTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAATCCAGNNNTCCTNNNNNNATGTATTGTGCACTTGAGTGCCCTTCAACTCANGNNNCATNNNNNNNNCTGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14512#0 GGTTTTCCAGTACAAAAACCAAAAGAAAGAGCCCCGCGACCTAGTGGAGAGGCGGTACAC 60
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 ------------------------------------------------------------
consensus_14512#0 TGGTGGTGGTGGGGGTGGTGTGGTGGGGGACGCGACGCGACGAGATGCCTCGGGAGACGC 120
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 ------------------------------------------------------------
consensus_14512#0 CGCCGCCGCCGCCGCCGGAGGGCGGCGAGGTGCACGAGGTGGTGGAGGGGGAGGACGGGC 180
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 ------------------------------------------------------------
consensus_14512#0 AGGCGGAGGACCAGGAGGAGAGGTGGGCGCGGCTGCTGCCGGAGCTGATGTCCGAGGTGG 240
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 ------------------------------------------------------------
consensus_14512#0 TGCGGCGCGTGGAGGCGTCCGGGGGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCT 300
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 ------------------------------------------------------------
consensus_14512#0 GCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGG 360
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 -----------------------------------------------------TTCAGTT 7
consensus_14512#0 AGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAA 420
consensus_14512#2 ----------------------------------------------------GTTCCCAA 8
consensus_14512#1 TTTATAACTTCTCTTGTTCCTTTATTTGTGCTCAAAAGTATTTCATTTATTTCCTTGCAA 67
* ***
consensus_14512#0 TGCAATGTTTCATTAAGCGGAATAAGAAGAACTCT---ACGTTCTACCTCTACCTTGGTT 477
consensus_14512#2 TGCAATGTTTCATTAAGCGGAATAAGAAGAACTCT---ACGTTCTACCTCTACCTTGGTT 65
consensus_14512#1 TTGATTGCTGTGT-AAGTCTCACGGCAGTTCCTTTGAGACATTATTTCACTGTCCTAGAT 126
* * ** * * *** * * ** * ** ** * * ** * * * *
consensus_14512#0 TGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGAC--G 535
consensus_14512#2 TGACAAATGCAACTGTGGATAAAGGGAAATTCCTCATGGCTGCTAGAAGGTTTAGAC--G 123
consensus_14512#1 TAGGTTATG--GCCTTATTTGATTTGATTCCCCTTATGGTGTGCAGATAATTTGGACTGG 184
* *** * * * * ** *** **** *** *** *** *
consensus_14512#0 T--GGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTT--TCACAAGGAA 591
consensus_14512#2 T--GGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTT--TCACAAGGAA 179
consensus_14512#1 TTGGGTATCTGTTGTGTTTTCGTGCTTGTATTGGATTTTTGTTGTCTTAATTTTTATTCA 244
* *** * * * * * * * * *** * * *** * * *
consensus_14512#0 GCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGACAAACTTCAAAATATATG 651
consensus_14512#2 GCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGACAAACTTCAAAATATATG 239
consensus_14512#1 TTGGTATTATTGTGCTTCTGTTTAGATCTGATTTTTGGGGGACAAACTTCAAAATATATG 304
* ** * *************************************
consensus_14512#0 ATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTG 711
consensus_14512#2 ATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTG 299
consensus_14512#1 ATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTG 364
************************************************************
consensus_14512#0 GAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCT 771
consensus_14512#2 GAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCT 359
consensus_14512#1 GAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCT 424
************************************************************
consensus_14512#0 ATAAATACAACCTGCTCAAATCCAGAGGTCCTAGGAGAATGTATTGTGCACTTGAGTGCC 831
consensus_14512#2 ATAAATACAACCTGCTCAAATCCAGNNNTCCTNNNNNNATGTATTGTGCACTTGAGTGCC 419
consensus_14512#1 ATAAATACAACCTGCTCAAATCCAGAGGTCCTAGGAGAATGTATTGTGCACTTGAGTGCC 484
************************* **** **********************
consensus_14512#0 CTTCAACTCAAGAGACATGGGAAAAC-TGTCTAAAGACGAAGTTCAGAAAACCCACAGGG 890
consensus_14512#2 CTTCAACTCANGNNNCATNNNNNNNNCTGTCT---------------------------- 451
consensus_14512#1 CTTCAACTCAAGAGACATGGGAAAAC-TGTCTAAAGACGAAGTTCAGAAAACCCACAGGG 543
********** * *** *****
consensus_14512#0 AACACAGTTCTAAGAAACAAAGCTCCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTG 950
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 AACACAGTTCTAAGAAACAAAGCTCCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTG 603
consensus_14512#0 AACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCT 1010
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 AACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCT 663
consensus_14512#0 GATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTTGGTAAG 1070
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 GATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTTGGTAAG 723
consensus_14512#0 GTCGATGACAATATCTTCACGATGGATTACCGGCAGCCACTCTCAGCGTTTCAAGCCTTT 1130
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 GTCGATGACAATATCTTCACGATGGATTACCGGCAGCCACTCTCAGCGTTTCAAGCCTTT 783
consensus_14512#0 GCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATG 1190
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 GCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATG 843
consensus_14512#0 TCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCAT 1250
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 TCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCAT 903
consensus_14512#0 TTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGT 1310
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 TTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGT 963
consensus_14512#0 TCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT 1370
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 TCTTGTGCGGGAAATGTACCATTTTACCAAATGGACTTAGCTCCGAGAAGGAAATTGTGT 1023
consensus_14512#0 TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGA 1430
consensus_14512#2 ------------------------------------------------------------
consensus_14512#1 TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGA 1083
consensus_14512#0 TGAAGTGATGATACCTTTTTTAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAA 1484
consensus_14512#2 ------------------------------------------------------
consensus_14512#1 TGAAGTGATGATACCTTTTTTACTT----------------------------- 1108
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||