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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1568 fasta sequence
[ATTGAACGCGCTTGGAAAGGTTGACCCCAATAAGCTTATGCATGTAACAACAATGGACCGATATGTAAGATACCATGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGATAATGATAACTACCCAGAGACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACATGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAA-TTGATGCTAGTGAATTGCCGGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAAAGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGCTCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA-CTATTTTCGTCAGTCT-T-GCAAAGG-CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT-CAAGATAAGCCTTCAGA-GATGCCCTGCGAGAAAGAAGAG-TTGCTTAATGCTGCTGTCC-GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA-GGAACTACTA-GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC-AGAAAAAGAAGAAGGC-GATGT-TTTGCTATTAGCA-CCAGCC-AA-CCAGGAGAGGGTACACC-CCCTATCTTGGGATTATACTTTCTGAC-AGC-CAAAGACGGC-GTTTGAGAA-TTGAGATGTTGTAATCGGCAGC-CCC-CC-CTGCTCGCTT-CC-CTGGTTCTCC-TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG-GCAAAATTCTGACATAAATAAA-TGTGTTTTTTTGC----A---AAAAAAAAAAAGA]
[+] EMBL CB630329 [ATTGAACGCGCTTGGAAAGGTTGACCCCAATAAGCTTATGCATGTAACAACAATGGACCGATATGTAAGATACCATGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGATAATGATAACTACCCAGAGACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACATGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAA TTGATGCTAGTGAATTGCCGGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAAAGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGCTCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAG ]
[+] EMBL CB630368 [ATTGAAAG GCTTGGAAAGGTTGACCCCAATAAACTTATGCATGTAACAACAATGGACCGATATGTAAGATACCATGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCATCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGGGAATTAATTGACCGATTGCAAAAAATTGATAATGATAACTACCCACAGACCCTATATCAAATGTTTATTGTCAATGCTGGGCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACATGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAA TTGATGCTAGTGAATTGCCGGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAAAGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGCTCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAATAGGTCAAGATGGTTAGAGCCA ]
[+] EMBL C26562 [ CCCCAATAAGCTTATGCATGTAACAACAATGGACCGATATGTAAGATACCATGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGATAATGATAACTACCCAGAGACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGGACACTGTGAAGTCCTTTCTGGNCCCAAAAACCACTTCCAAGNTACATGTACTCGGGGACAAATATCAAAGCAAGCTGCTAGGAGTAATTTGNTGCTAGTGAATTGC ]
[+] EMBL CB645368 [ ACCACGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGATAATGATAACTACCCAGAGACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACATGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAA TTGATGCTAGTGAATTGCCGGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAAAGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGCTCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCT ]
[+] EMBL AK060180 [ AGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGATAATGATAACTACCCAGAGACCCTATATCAAATG TATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACATGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAA TTGATGCTAGTGAATTGCCGGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAAAGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGCTCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTCTGACATAAATAAA TGT ]
[-] EMBL CB630330 [ TGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTCTGACATAAATAAAGTGTG ]
[-] EMBL CB645369 [ GCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATGGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCGAGGGAAATTCTGACATAAATAAA ]
[-] EMBL CB630369 [ GAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTCCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAAGGAGTCAGACCAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAATTTCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAACCCTTCAGATGATGCCCTGCGAGAAAGAAGAG TTGCTTAATGGTGCTGTCC GCAGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAATTGCTA GCGTACATAGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATTT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTTTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGACGTTGTAATCGGCAGC CCC CC CTGCTCGTTT CC ATGGTTGTCC CGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTATGACATAAATAAA TGTGTTTTTTTGC A AAAAAAAAAAAG ]
[+] EMBL AU100741 [ ctcCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTCTGACATAAATAAA TGTGTTTTTTTGC A AAAAAA ]
[-] EMBL CA759466 [ GCAGTTTTGCTGGCAGTTTTTATGGCAATCATCACTTTAGTTCGGTCAGTTAAAGATCCTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCCACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTTAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCC CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTTTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTCTGACATAAATAAA TGTGTTTTTTTGCCCCGAGTTAAAAAAAAAAAaa]
[+] EMBL BQ906770 [ CATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGANGCCCAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAGCTTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGATGGAACTACTACGCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCCAAA NCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GC AAATTCTGACATAAATAAA TGTGTTTTTTTGC A AAAAA ]
[+] EMBL BI807055 [ ttgCCGACCACTTTCCCCAACTCCTGGGTTNGTTGAAGCTGAACCTATGTTCGTCAGTCTGTGGCAAAGGCCTGGGAGATCTTGAAGAGAAGTTCCTGATGCTTCCAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC CCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACCAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AATCCAGGAGAGGGTACACC CCCTATCTTGGGATNATACTTTCTGAC AGC C AAGACGGC GTTTGAGAACTTGAGATGTTGTAATC GCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATC GCCAAATTCTGACATAAATAAA TGTGTCCCCCCCC A AAAAAAAA ]
[+] EMBL CB682425 [ TCCCCCACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTCTGACATAAATAAA TGT ]
[+] EMBL CA757425 [ AAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAG ]
[+] EMBL BM420762 [ AGAAGA TTGCTTAATGCTGCTGTCCNCCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACNAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGA GTT CCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCA CC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGNC AGC C AAGACGGC GTTTGAGAA TTGAGATGTTGTAATC GCAGC CCC CC CTGCTCGCTTCCC CTGGTTCTCC TGTAAAATGTGAAACGAC GACGTCGGATGTAAATCG GC AAATTCTGACATAAATAAA TGTGTTTTTTT C A AAAAAAAAA ]
[+] EMBL BI811089 [ atGTAAGGAGGTTGCCAAGGCTCAAGAAAAAGAAGAAGGCAGATGTGTTTGCTATTAGCAGCCAGCC AA CCAGGAGAGGGTACACCACCCTATCTTGGGATTATACTTTCTGACAAGCACAAAGACGGCAGTTTGAGAA TTGAGATGTTGTAATCGGCAGCACCCACCACTGCTCGCTT CCACTGGTTCTCCATGTAAAATGTGAAACGACAGACGTCGGATGTAAATC GCAAAATTCTGACATAAATAAA TGTGTTTTTTTGC A AAAAA ]
consensusID : consensus_14515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence
[GACGGCGTTTGAGAATTGAGATGTTGTAATCGGCAGCCCCCCCTGCTCGCTTCCCTGGGTTCTCCTGTAAAATGTGAAACGACAGACGTCGGATGTAAATCGGCCAAAATTCTGACATAAATAAATGTGTTTTTTGGCACCGAGTTCTTCCCTAAAAAA]
[+] EMBL BI803932 [GACGGCGTTTGAGAATTGAGATGTTGTAATCGGCAGCCCCCCCTGCTCGCTTCCCTGGGTTCTCCTGTAAAATGTGAAACGACAGACGTCGGATGTAAATCGGCCAAAATTCTGACATAAATAAATGTGTTTTTTGGCACCGAGTTCTTCCCTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14515#0 ATTGAACGCGCTTGGAAAGGTTGACCCCAATAAGCTTATGCATGTAACAACAATGGACCG 60
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 ATATGTAAGATACCATGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATG 120
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 CTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGT 180
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 GGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGA 240
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 TAATGATAACTACCCAGAGACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTT 300
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 TCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACA 360
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 TGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAATTGATGCTAGTGAATTGCC 420
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 GGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAA 480
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 AGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGC 540
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 TCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAA 600
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 GCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGA 660
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 TGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCG 720
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 TGAAGAGGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGT 780
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 TCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGC 840
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 CTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGA 900
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 CCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGT 960
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 TAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAAC 1020
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 ATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTT 1080
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 TGTTGAAGCTGAACTATTTTCGTCAGTCTTGCAAAGGCTGGGAGATCTTGAAGAGAAGTT 1140
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 CCTGATGCTTCAAGATAAGCCTTCAGAGATGCCCTGCGAGAAAGAAGAGTTGCTTAATGC 1200
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 TGCTGTCCGCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACA 1260
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 TGAGGCTCTTATCAGGCAAGAGGAACTACTAGCCTACATCGACAGTAAGGAGGTTGCCAA 1320
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 GGCTCAGAAAAAGAAGAAGGCGATGTTTTGCTATTAGCACCAGCCAACCAGGAGAGGGTA 1380
consensus_14515#1 ------------------------------------------------------------
consensus_14515#0 CACCCCCTATCTTGGGATTATACTTTCTGACAGCCAAAGACGGCGTTTGAGAATTGAGAT 1440
consensus_14515#1 --------------------------------------GACGGCGTTTGAGAATTGAGAT 22
**********************
consensus_14515#0 GTTGTAATCGGCAGCCCCCCCTGCTCGCTTCCCTGG-TTCTCCTGTAAAATGTGAAACGA 1499
consensus_14515#1 GTTGTAATCGGCAGCCCCCCCTGCTCGCTTCCCTGGGTTCTCCTGTAAAATGTGAAACGA 82
************************************ ***********************
consensus_14515#0 CAGACGTCGGATGTAAATCGGC-AAAATTCTGACATAAATAAATGTGTTTTTTTGCAAAA 1558
consensus_14515#1 CAGACGTCGGATGTAAATCGGCCAAAATTCTGACATAAATAAATGTGTTTTTTGGCACCG 142
********************** ****************************** ***
consensus_14515#0 AAAA-------AAAAGA 1568
consensus_14515#1 AGTTCTTCCCTAAAAAA 159
* **** *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||