These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 671 fasta sequence [CATTCTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACC-TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT-CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG-C-G-G-GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG-CCTACG-GCG-AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT-CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT-CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG-CATCGAAGTCTGTTTGCTGAAAAAAAAAAAAAAA] [+] EMBL CF335710 [CATTCTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG CGG G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATT ] [+] EMBL CF339278 [ CTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCC ] [+] EMBL CF298258 [ CTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACC TCTCCCACCACCACCCAAACAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTTGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGA ] [+] EMBL CF340671 [ CTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACCTTCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C GNG GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATC ] [+] EMBL CF339956 [ TCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG CATCGAAGTCTGTTTGCTGAAAA ] [+] EMBL CF333573 [ TTCCGGTTGCCTCGCTATCCTCTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAGAC G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATTNCAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATC ] [+] EMBL CF291432 [ CTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G GNGTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATTNCAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAA AGATTTCGAAGTCTGTTTGCTGAAAAAAAAAAAAAAA] [+] EMBL AK120103 [ CTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTT ] [+] EMBL BE230533 [ CCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGGCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAA C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCT ] [+] EMBL OSC4231 [ AAGCAGCCAAGGCGNAGGAGGGGAGCCGGCCGCC NGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGT GTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCG CAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAG NAGGAG CNGCGC GTTACG G G AGCTCATGTCCATTGGCGGCATCGG CCCGGCGTCA ] [+] EMBL AU101363 [ AGCAGCCAAGNCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG CATCGAAGTCTGTTTGCTGAAAAAAAAAA ] [+] EMBL AK062047 [ AGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG CATCGAAGT ] [-] EMBL CF291433 [ CATCAAGGACTGCTCCCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGGCCCTACG GCGAAGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTTTAGGTTTTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTTTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTTTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG CATCGAAGTCTGTTTGCTGAAAAAAAAA ] [-] EMBL CF335711 [ CAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGGCCCTACGNGCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTTTAGGTTTTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTTTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTTTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG CATCGAAGTCTGTTTGCTGAAAAA ] [-] EMBL CF298259 [ TGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCT AGGATAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATA ] [-] EMBL CF333574 [ TT CAATTTGGGGTTCAATGGGTGGACATTTTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGGGTCGAATCAATAAAATTTTAAGGTTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTGGACATCATCCCATGAATGTGTTTCGTTTAaaaaaaaa ] consensusID : consensus_14524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [GCAACATCNCAGCTACGATGCCGCANCTGAAGCCTGACCACCAACGTGCCCNTCGACGCCGTCATCNCCGCCGACATCATCAAGGACTGCTCCAAGGCGCTCGCCAANATCATCGGCNANCCCGAATCCTACNTCATGGTGTCCATCNACGGGTCCGTGCCCATGTCGTTCGCCGCCNGCGNAGGAACCGGCNGCCTACGGCNANCTCATGTCCATCGGCGGCATCGGCCCCNGCGTCTACNGAAANCTGAACGCCNCTCT] [+] EMBL BE228637 [GCAACATCNCAGCTACGATGCCGCANCTGAAGCCTGACCACCAACGTGCCCNTCGACGCCGTCATCNCCGCCGACATCATCAAGGACTGCTCCAAGGCGCTCGCCAANATCATCGGCNANCCCGAATCCTACNTCATGGTGTCCATCNACGGGTCCGTGCCCATGTCGTTCGCCGCCNGCGNAGGAACCGGCNGCCTACGGCNANCTCATGTCCATCGGCGGCATCGGCCCCNGCGTCTACNGAAANCTGAACGCCNCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14524#0 CATTCTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACCTCTCCCACCACCAC 60 consensus_14524#1 ------------------------------------------------------------ consensus_14524#0 CCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCG 120 consensus_14524#1 ----------------------------------------------GCAACATCNCAGCT 14 ** **** **** consensus_14524#0 ACGATGCCGCAGCTGA-GCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGA 179 consensus_14524#1 ACGATGCCGCANCTGAAGCCTGACCACCAACGTGCCCNTCGACGCCGTCATCNCCGCCGA 74 *********** **** ******************** *********** ** ******* consensus_14524#0 CATCATCAAGGACTGCTCCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGT 239 consensus_14524#1 CATCATCAAGGACTGCTCCAAGGCGCTCGCCAANATCATCGGCNANCCCGAATCCTACNT 134 ******************************** ********* * ************ * consensus_14524#0 CATGGTGTCGATCAGCGGGTCGGTGCCCATGTCGTTCGCCGCCAGCGA-GGAGCCGGCGG 298 consensus_14524#1 CATGGTGTCCATCNACGGGTCCGTGCCCATGTCGTTCGCCGCCNGCGNAGGAACCGGCNG 194 ********* *** ****** ********************* *** *** ***** * consensus_14524#0 CCTACGGCGAGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCG 358 consensus_14524#1 CCTACGGCNANCTCATGTCCATCGGCGGCATCGGCCCCNGCGTCTACNGAAANCTGAACG 254 ******** * *********** *************** ***** ** **** **** ** consensus_14524#0 CCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCA 418 consensus_14524#1 CCNCTCT----------------------------------------------------- 261 ** **** consensus_14524#0 AATTTGACGATGTCAAGGGATTCAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAG 478 consensus_14524#1 ------------------------------------------------------------ consensus_14524#0 TCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATG 538 consensus_14524#1 ------------------------------------------------------------ consensus_14524#0 TCATGTGTATCATTCCGTTGCACTTTCGACATCATCCATGAATGTGTTTCGTTTATGTGA 598 consensus_14524#1 ------------------------------------------------------------ consensus_14524#0 GAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAGCATCGAAGTCTGTTTGCTGAA 658 consensus_14524#1 ------------------------------------------------------------ consensus_14524#0 AAAAAAAAAAAAA 671 consensus_14524#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||