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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 671 fasta sequence
[CATTCTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACC-TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT-CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG-C-G-G-GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG-CCTACG-GCG-AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT-CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT-CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG-CATCGAAGTCTGTTTGCTGAAAAAAAAAAAAAAA]
[+] EMBL CF335710 [CATTCTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG CGG G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATT ]
[+] EMBL CF339278 [ CTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCC ]
[+] EMBL CF298258 [ CTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACC TCTCCCACCACCACCCAAACAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTTGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGA ]
[+] EMBL CF340671 [ CTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACCTTCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C GNG GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATC ]
[+] EMBL CF339956 [ TCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG CATCGAAGTCTGTTTGCTGAAAA ]
[+] EMBL CF333573 [ TTCCGGTTGCCTCGCTATCCTCTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAGAC G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATTNCAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATC ]
[+] EMBL CF291432 [ CTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G GNGTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATTNCAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAA AGATTTCGAAGTCTGTTTGCTGAAAAAAAAAAAAAAA]
[+] EMBL AK120103 [ CTCCACC TCTCCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTT ]
[+] EMBL BE230533 [ CCCACCACCACCCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGGCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAA C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCT ]
[+] EMBL OSC4231 [ AAGCAGCCAAGGCGNAGGAGGGGAGCCGGCCGCC NGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGT GTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCG CAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAG NAGGAG CNGCGC GTTACG G G AGCTCATGTCCATTGGCGGCATCGG CCCGGCGTCA ]
[+] EMBL AU101363 [ AGCAGCCAAGNCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG CATCGAAGTCTGTTTGCTGAAAAAAAAAA ]
[+] EMBL AK062047 [ AGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCGACGATGCCGCAGCTGAGCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGACATCATCAAGGACTGCT CCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG CATCGAAGT ]
[-] EMBL CF291433 [ CATCAAGGACTGCTCCCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGGCCCTACG GCGAAGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTTTAGGTTTTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTTTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTTTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG CATCGAAGTCTGTTTGCTGAAAAAAAAA ]
[-] EMBL CF335711 [ CAGGATCATCGGCAAGCCCGAATCCTACGTCATGGTGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGGCCCTACGNGCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTTTAGGTTTTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTTTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTTTAAGGCTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAG CATCGAAGTCTGTTTGCTGAAAAA ]
[-] EMBL CF298259 [ TGTCGATCAG C G G GTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGG CCTACG GCG AGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATT CAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCT AGGATAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTCGACATCAT CCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATA ]
[-] EMBL CF333574 [ TT CAATTTGGGGTTCAATGGGTGGACATTTTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGGGTCGAATCAATAAAATTTTAAGGTTAAATGTTACATGTCATGTGTATCATTCCGTTGCACTTTGGACATCATCCCATGAATGTGTTTCGTTTAaaaaaaaa ]
consensusID : consensus_14524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence
[GCAACATCNCAGCTACGATGCCGCANCTGAAGCCTGACCACCAACGTGCCCNTCGACGCCGTCATCNCCGCCGACATCATCAAGGACTGCTCCAAGGCGCTCGCCAANATCATCGGCNANCCCGAATCCTACNTCATGGTGTCCATCNACGGGTCCGTGCCCATGTCGTTCGCCGCCNGCGNAGGAACCGGCNGCCTACGGCNANCTCATGTCCATCGGCGGCATCGGCCCCNGCGTCTACNGAAANCTGAACGCCNCTCT]
[+] EMBL BE228637 [GCAACATCNCAGCTACGATGCCGCANCTGAAGCCTGACCACCAACGTGCCCNTCGACGCCGTCATCNCCGCCGACATCATCAAGGACTGCTCCAAGGCGCTCGCCAANATCATCGGCNANCCCGAATCCTACNTCATGGTGTCCATCNACGGGTCCGTGCCCATGTCGTTCGCCGCCNGCGNAGGAACCGGCNGCCTACGGCNANCTCATGTCCATCGGCGGCATCGGCCCCNGCGTCTACNGAAANCTGAACGCCNCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14524#0 CATTCTCTCTCCTCCATCTTCCGGTTGCCTCGCTATCCTCTCCACCTCTCCCACCACCAC 60
consensus_14524#1 ------------------------------------------------------------
consensus_14524#0 CCAAGCAGCCAAGGCGGAGGAGGGGAGCCGGCCGGCGACGCGCGCGCCACCATCCCAGCG 120
consensus_14524#1 ----------------------------------------------GCAACATCNCAGCT 14
** **** ****
consensus_14524#0 ACGATGCCGCAGCTGA-GCCTGACCACCAACGTGCCCGTCGACGCCGTCGTCGCCGCCGA 179
consensus_14524#1 ACGATGCCGCANCTGAAGCCTGACCACCAACGTGCCCNTCGACGCCGTCATCNCCGCCGA 74
*********** **** ******************** *********** ** *******
consensus_14524#0 CATCATCAAGGACTGCTCCAAGGCGCTCGCCAGGATCATCGGCAAGCCCGAATCCTACGT 239
consensus_14524#1 CATCATCAAGGACTGCTCCAAGGCGCTCGCCAANATCATCGGCNANCCCGAATCCTACNT 134
******************************** ********* * ************ *
consensus_14524#0 CATGGTGTCGATCAGCGGGTCGGTGCCCATGTCGTTCGCCGCCAGCGA-GGAGCCGGCGG 298
consensus_14524#1 CATGGTGTCCATCNACGGGTCCGTGCCCATGTCGTTCGCCGCCNGCGNAGGAACCGGCNG 194
********* *** ****** ********************* *** *** ***** *
consensus_14524#0 CCTACGGCGAGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCG 358
consensus_14524#1 CCTACGGCNANCTCATGTCCATCGGCGGCATCGGCCCCNGCGTCTACNGAAANCTGAACG 254
******** * *********** *************** ***** ** **** **** **
consensus_14524#0 CCGCTCTCGCCGAGATCCTCGAGACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCA 418
consensus_14524#1 CCNCTCT----------------------------------------------------- 261
** ****
consensus_14524#0 AATTTGACGATGTCAAGGGATTCAATTTGGGGTTCAATGGGTCGACATTCTGAGGCCAAG 478
consensus_14524#1 ------------------------------------------------------------
consensus_14524#0 TCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATG 538
consensus_14524#1 ------------------------------------------------------------
consensus_14524#0 TCATGTGTATCATTCCGTTGCACTTTCGACATCATCCATGAATGTGTTTCGTTTATGTGA 598
consensus_14524#1 ------------------------------------------------------------
consensus_14524#0 GAGACCGAACTTTGCCTGCTTTATTTCAATCAAAAATAGCATCGAAGTCTGTTTGCTGAA 658
consensus_14524#1 ------------------------------------------------------------
consensus_14524#0 AAAAAAAAAAAAA 671
consensus_14524#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||