These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1375 fasta sequence [CGCTCGCATTTTTTTTTCAGCTCCGCGGAAGGAACGAAACCCAACCCAAGCGAGGCAAAAGCGGCGGCGGCGGAGGAGTAGAGGAGCAATGGAGAGGGCGGTGCCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCGCCGCCGCCGCGGCCTCGCCGGTCGCCTCCTCCCGCCCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGC-TGAGAATAGTGAAAATGATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTGGAATAAGCCAAATCTCATTCAGTGCTGATGGAAGTGTTTCTCCAAAGAAGCCATCGTCATTACCTGAGGTGGCTAAGCAGCGAGAGCTTAGTGGTACA-CTGGAGACTGA-TGCTG-AGGCTAAAATGAATAAGCAGCATTCTGAAGCCAAGAGCAAGG-AGCTCAGTGGG-AGTGATATTTTTGGTCCTCCTCCAGAGATCCCTGCAAGGCCATTGGCTGCTCGCAATATGGAGCTGCAAGGAAATCTAGATTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACATCACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC-TTCAAAGAGGACGCTACCCCTGCA-TCAGCTGAGAAATCTCTGAGCTCAGC-AAAGCTGAAGGAGA-TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAGCTCATGGTATCATCAGGAAATAATGTCTGTCTTGTATCAAATTAACTTATTTGTGAGTTATGCAAAAGATAACGAAGGTATCTACAATACCATTTCCTCTTAAAAAAAAAAA] [+] EMBL AK103788 [CGCTCGCATTTTTTTTTCAGCTCCGCGGAAGGAACGAAACCCAACCCAAGCGAGGCAAAAGCGGCGGCGGCGGAGGAGTAGAGGAGCAATGGAGAGGGCGGTGCCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCGCCGCCGCCGCGGCCTCGCCGGTCGCCTCCTCCCGCCCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGC TGAGAATAGTGAAAATGATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTGGAATAAGCCAAATCTCATTCAGTGCTGATGGAAGTGTTTCTCCAAAGAAGCCATCGTCATTACCTGAGGTGGCTAAGCAGCGAGAGCTTAGTGGTACA CTGGAGACTGA TGCTG AGGCTAAAATGAATAAGCAGCATTCTGAAGCCAAGAGCAAGG AGCTCAGTGGG AGTGATATTTTTGGTCCTCCTCCAGAGATCCCTGCAAGGCCATTGGCTGCTCGCAATATGGAGCTGCAAGGAAATCTAGATTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACATCACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAGCTCATGGTATCATCAGGAAATAATGTCTGTCTTGTATCAAATTAACTTATTTGTGAGTTATGCAAAAGATAACGAAGGTATCTACAATACC ] [+] EMBL AK101129 [ TGGAAAGGGGGGGGCGGGTGAGGAAGCCGCACACCTCGACGGGGGACCTGCTCACGTGGTCGGCGAGGGGGCCCGACGCCGCCGCCGCCGCGGCCTCGCCGGTCGCCTCCTCCCGCCCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGC TGAGAATAGTGAAAATGATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTGGAATAAGCCAAATCTCATTCAGTGCTGATGGAAGTGTTTCTCCAAAGAAGCCATCGTCATTACCTGAGGTGGCTAAGCAGCGAGAGCTTAGTGGTACA CTGGAGACTGA TGCTG AGGCTAAAATGAATAAGCAGCATTCTGAAGCCAAGAGCAAGG AGCTCAGTGGG AGTGATATTTTTGGTCCTCCTCCAGAGATCCCTGCAAGGCCATTGGCTGCTCGCAATATGGAGCTGCAAGGAAATCTAGATTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACATCACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTT ] [+] EMBL AU085978 [ TGGAGAGGGCGGTGCCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCGCCGCCGCCGCGGACTCGCCGGTCGCCTCCTCCCGCCCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGC TGAGAATAGTGAAAATGATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTGGAATAAGCC AATCTCATTCAGTGCTGATGGAANTGTTTCTCCAAAGAAGCCATCGT ] [+] EMBL AU090588 [ TGGAGAGGGCGGTGCCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCGNCGCCGCCGCGGCCTCGCCGGTCGCCTCCTCCCG CCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGCTTGAGAATAGTGAAAATGATGATTCAGAGGCTTCAAAT CTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTG ] [+] EMBL AU062687 [ GGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTNCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGC TGAGAATAGTGAAAATNATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTGGAATAAGCCAAATCTCATTCAGTGCTGATGGAAGTGTTTCTCCAAAGAAGCCATCGTCATTACCTGAGGTGGCTAAGCAGCGAGAG TTAGTGGTACANTTNGAGACTGATTGCTGNAGGCTAAAATGANTA ] [+] EMBL AU090589 [ CAAGAGCAAGGAAGCCCAGTGGGAAGTGATATTTTTGGTCCTCNTCCAGAGATCCCTGCAAGGCCATTGGCTGCTCGCAATATGNAGCTGCAAGGAAATCTAGATTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACATCACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCAaaaaaaa ] [+] EMBL AU030614 [ CAATATGGAGCTGCAAGGAAATCTAGATTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACATCACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAaaaaaa ] [+] EMBL AU029951 [ CACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCANTCCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAG AGCATTGCACTGATCTAATCGCCGCAG TGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGGCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGT AACTTGACTTAATCTCATCTGTCTAAGGGac ] [+] EMBL AU100699 [ CACGTTCAGTGAGGAGCCTGTAGTCAAGACGTNAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAGCTCATGGTATCATCAGGAAATAATGTCTGTCTTGTATCAAATTAACTTATTTGTGAGTTATGCAAAAGATAACGAAGGTATCTACAATACCATTTCCTCTTAAAAAAAAAAA] [+] EMBL AU091382 [ GCAACAACATCTTTCAAAGAGGACGCTACCCCTGCATTCAGCTGAGAAATCTCTGAGCTCAGCAAAAGCTGAAGGAGATTGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAaaaaa ] [+] EMBL AU166560 [ GTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGNACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAGCTCATGGTATCATCAGGAAATAATGTCTGTCTTGTATCAAATTAACTTATTTGTGAGTTATGCAAAAGATAACGAAGGTAaaaaaaaa ] consensusID : consensus_14529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1152 fasta sequence [CAACCGCATTTCAAAACTTGAAACGAGGGAGACGAAGTGAGAGAGAGATGGAGAGGGCGGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCCGGGCCCCGACAATGCCGCGGCGGCGGCGGGCGCCGCCGCGCCGCC-TTCCTCGCGGCCCAGCCTCAAGCCGGCCGGTGGGATCACGCCGGCGATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAGGAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACCGGGAGTGGAATATTTTCTGCACAGGGTGCAAATGGAGATTCTGAAAC-TGGCTCCGGTGACTCTAATCC-TCCCAGCAAGACATCATTAAGGATGTATCAGCAAACTGTAACTGGCACAAGTCAGATATCATTTAGTGCTGAGGGGAGCGTGTCTCCGAAGAAGCCTTCCTCATTGCCTGAGGTGGCGAAGCAGCGAGAGTTGAGTGGTACACTGGAGAGTGAAGCTGATGCTAAATTGAAGAAGCAGAACTCGGAAGCAAAAAGCAAGGAGCTCAGCGGGAGTGATATATTTGGCCCACCTCCTGAGATTCCTTCTAGACCCTTAGCTGCTCGTAACCTGGAGCTGCAGGGAAATTTAGATTTTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATCCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAGACCG-CCAAGAAAATCCATAACCAGAAGTTCCATGAGTTGACGGGCAACAACATCTTCAAGGAAGAAGCTCCCCCAGGCTCGGCCGAGAAGTCCCTGAGCACGGCGAAGCTCAAGGAGATGAGTGGCAGCAACATCTTCGCCGATGGGAAGGTGGCCTCCCGGGACTACTTCGGAGGCGTCAGGAAGCCTCCTGGCGGCGGGAGCAGCATCGCGCTGGTCTGACGACTCGCCGGAAGAGTTCTGAATATGTAGTTTGTGGCCAGTCTGTGTTTGTTGGCTGTTGTTTATCCATCATTCGAGCGAGATTTGTTAGTTGTTGCATACTCACCTAAAGGGCTGGTCATTGTTCATCTCCGAACTTCAAATACCATTCACTTCTCATCAAAAAAAAAAA] [+] EMBL AK059246 [CAACCGCATTTCAAAACTTGAAACGAGGGAGACGAAGTGAGAGAGAGATGGAGAGGGCGGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCCGGGCCCCGACAATGCCGCGGCGGCGGCGGGCGCCGCCGCGCCGCC TTCCTCGCGGCCCAGCCTCAAGCCGGCCGGTGGGATCACGCCGGCGATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAGGAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACCGGGAGTGGAATATTTTCTGCACAGGGTGCAAATGGAGATTCTGAAAC TGGCTCCGGTGACTCTAATCC TCCCAGCAAGACATCATTAAGGATGTATCAGCAAACTGTAACTGGCACAAGTCAGATATCATTTAGTGCTGAGGGGAGCGTGTCTCCGAAGAAGCCTTCCTCATTGCCTGAGGTGGCGAAGCAGCGAGAGTTGAGTGGTACACTGGAGAGTGAAGCTGATGCTAAATTGAAGAAGCAGAACTCGGAAGCAAAAAGCAAGGAGCTCAGCGGGAGTGATATATTTGGCCCACCTCCTGAGATTCCTTCTAGACCCTTAGCTGCTCGTAACCTGGAGCTGCAGGGAAATTTAGATTTTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATCCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAGACCG CCAAGAAAATCCATAACCAGAAGTTCCATGAGTTGACGGGCAACAACATCTTCAAGGAAGAAGCTCCCCCAGGCTCGGCCGAGAAGTCCCTGAGCACGGCGAAGCTCAAGGAGATGAGTGGCAGCAACATCTTCGCCGATGGGAAGGTGGCCTCCCGGGACTACTTCGGAGGCGTCAGGAAGCCTCCTGGCGGCGGGAGCAGCATCGCGCTGGTCTGACGACTCGCCGGAAGAGTTCTGAATATGTAGTTTGTGGCCAGTCTGTGTTTGTTGGCTGTTGTTTATCCATCATTCGAGCGAGATTTGTTAGTTGTTGCATACTCACCTAAAGGGCTGGTCATTGTTCATCTCCGAACTTCAAATACCATTC ] [+] EMBL C91748 [ CAAAACTTGAAACGAGGGAGACGAAGTGAGAGAGAGATGGAGAGGGCGGTGCCGGTGCGGAAGACGCACGNCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCCGGGCCCCGACAATGCCGCGGCGGC GCGGGCG CG CGC NCGCCTTTCCTCGCGGCCCAGCCTCAAGCCGGCCGGTGGGATCACGCCGGCGATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAGGAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACCCGGAGTGGAATATTTTCTNCACAAGGT CAAATGGAGATTCTGAAACTTGGCTCCGGTGACTCTAATCCTTCCCAGAAAG CATCATTAAGGATGTATCAG AAACTGTAACTTGCATAAGTCAG TATCATTTAGTTCTTAGGGGAGCGTGTTTCCGAAG ] [+] EMBL AU172842 [ CATGTTTGGGGAGGAGCCGGCGGTCAAGACCGCCCAAAAAAATCCATAACCAGAAGTTCCATGAGTTGACGGGCAACAACATCTTCAAGGAAGAAGCTCCCCCAGGCTCGGCCGAGAAGTCCCTGAGCACGGCGAAGCTCAAGGAGATGAGTGGCAGCAACATCTTCGCCGATGGGAAGGTGGCCTCCCGGGACTACTTCGGAGGCGTCAGGAAGCCTCCTGGCGGCGGGAGCAGCATCGCGCTGGTCTGACGACTCGCCGGAAGAGTTCTGAATATGTAGTTTGTGGCCAGTCTGTGTTTGTTGGCTGTTGTTTATCCATCATTCGAGCGAGATTTGTTAGTTGTTGCATACTCACCTAAAGGGCTGGTCATTGTTCATCTCCGAACTTCAAATACCATTCACTTCTCATCAAAAAAAAAAA] consensusID : consensus_14529#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 846 fasta sequence [TTCCAACCCTGTAATCCAGGGTAAGCCGAGGTATTGTGACCTGGGGACTATTGGCTTAATTGAAACCACTTTGTACCCAACCAGGACTCATGGGAAATATTTTGCCTCCTCCAGGAGATCCGCAAGCCCATGCTGCTCGCAATATGGAGCTGGCAAGGAAATCTAGATTTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACAATCACGTTCAGTGAGGAGCACATGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATCTTCAAAAGAGGACGCTACACCTGCATCAGCTGAGAAATCTCTGAGCTCAGCAAAGCTGAAGGAGATGACGGCAGTGACATCTTTGCTGATTGGACGGCAGCTCCCCCGAGACTTATTCTCGGCCCGGGTTGTTCCCGCAAAGCCCACCACTTGGGTGGCCGAAGGAACCAGCATTTGCACCGTGATTCTAATTCGCCCGCCAGGCCTTCACCTAAATTCTTGGAACTGGGCCTTAACTTTTTTAACCCCTCAATTCGCCTTGAAAAGGTTCCCGTGGCCAATTGTTGCCTTCTTTCCCTGGGAACCCTGGGTTTCTTTGGAATTCCACTGGCCTGAAGGAAGGCCTTGAATAATTCTTTGGCCCTGGAATTAATCCAACCCTAAGGAAGGTCACAGAATCTGACTCAGCTTATGTTTGTAACTTGACTTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCCTTGGACCGAGACTGAAATAAGTTTTATTTGGTTCACTTTTTGTGAAAAA] [+] EMBL BI805391 [TTCCAACCCTGTAATCCAGGGTAAGCCGAGGTATTGTGACCTGGGGACTATTGGCTTAATTGAAACCACTTTGTACCCAACCAGGACTCATGGGAAATATTTTGCCTCCTCCAGGAGATCCGCAAGCCCATGCTGCTCGCAATATGGAGCTGGCAAGGAAATCTAGATTTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACAATCACGTTCAGTGAGGAGCACATGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATCTTCAAAAGAGGACGCTACACCTGCATCAGCTGAGAAATCTCTGAGCTCAGCAAAGCTGAAGGAGATGACGGCAGTGACATCTTTGCTGATTGGACGGCAGCTCCCCCGAGACTTATTCTCGGCCCGGGTTGTTCCCGCAAAGCCCACCACTTGGGTGGCCGAAGGAACCAGCATTTGCACCGTGATTCTAATTCGCCCGCCAGGCCTTCACCTAAATTCTTGGAACTGGGCCTTAACTTTTTTAACCCCTCAATTCGCCTTGAAAAGGTTCCCGTGGCCAATTGTTGCCTTCTTTCCCTGGGAACCCTGGGTTTCTTTGGAATTCCACTGGCCTGAAGGAAGGCCTTGAATAATTCTTTGGCCCTGGAATTAATCCAACCCTAAGGAAGGTCACAGAATCTGACTCAGCTTATGTTTGTAACTTGACTTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCCTTGGACCGAGACTGAAATAAGTTTTATTTGGTTCACTTTTTGTGAAAAA] consensusID : consensus_14529#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [GCGGAGGAGGAGAGGAGCAATGGAGAGGGCGGTGCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCCGCCTGCCNCCTTCGCCGTCGGCTTCTTCCANCCCAGNCTCAAGGTAAGCTATGACTAAGCCNTACTCGAATNCTGCTCTGCTTCCCCGTGCNTTCGAGTGCGACACGCGAGGCTTACTTTTTTGAGGGTGCGTNTTGGTTGTTTGTNCTGGTGTTGTGGTGTNATGTCTTGG] [+] EMBL C26326 [GCGGAGGAGGAGAGGAGCAATGGAGAGGGCGGTGCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCCGCCTGCCNCCTTCGCCGTCGGCTTCTTCCANCCCAGNCTCAAGGTAAGCTATGACTAAGCCNTACTCGAATNCTGCTCTGCTTCCCCGTGCNTTCGAGTGCGACACGCGAGGCTTACTTTTTTGAGGGTGCGTNTTGGTTGTTTGTNCTGGTGTTGTGGTGTNATGTCTTGG] consensusID : consensus_14529#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence [CGAGGCCGCAAGGGCGCAACCGCATTTNAAAACTTGAAACGAGGGAGACGAAGTNAGAGANAGATGGAGAGGGNGGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCCGGGCCCCGACAATNCTGCGGCGGCGCGGTGCGCCCTTACNTACTGTTCCTCGN] [+] EMBL OSR19531A [CGAGGCCGCAAGGGCGCAACCGCATTTNAAAACTTGAAACGAGGGAGACGAAGTNAGAGANAGATGGAGAGGGNGGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCCGGGCCCCGACAATNCTGCGGCGGCGCGGTGCGCCCTTACNTACTGTTCCTCGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14529#1 ------------------------------------------------------------ consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 CGCTCGCATTTTTTTTTCAGCTCCGCGGAAGGAACGAAACCCAACCCAAGCGAGGCAAAA 60 consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 ------------------------------------------------------------ consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 GCGGCGGCGGCGGAGGAGTAGAGGAGCAATGGAGAGGGCGGTGCCGGTGAGGAAGCCGCA 120 consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 ------------------------------------------------------------ consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 CACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCGCCGCCGCCGC 180 consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 ------------------------------------------------------------ consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 GGCCTCGCCGGTCGCCTCCTCCCGCCCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGC 240 consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 ------------------------------------------------------------ consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 GATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAA 300 consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 ------------------------------------------------------------ consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 ATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGCTGAGAATAG 360 consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 ------------------------------------------------------------ consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 TGAAAATGATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCA 420 consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 ------------------------------------------------------------ consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 GCAAACTGTAACTGGAATAAGCCAAATCTCATTCAGTGCTGATGGAAGTGTTTCTCCAAA 480 consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 ------------------------------------------------------------ consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 GAAGCCATCGTCATTACCTGAGGTGGCTAAGCAGCGAGAGCTTAGTGGTACACTGGAGAC 540 consensus_14529#2 --TTCCAACCCTGTAATCCAGGGTA-------AGCCGAGGTATTGTGAC---CTGGGGAC 48 consensus_14529#1 ------------------------------------------------------------ consensus_14529#4 --------------------------------------------CGAGGCCGCAAGGGCG 16 consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 TGATGCTGAGGCTAAAATGAATAAGCAGCATTCTGAAGCCAAGAGCAAGGAGCTCAGTGG 600 consensus_14529#2 TATTG-----GCTTAATTGAA-----ACCACTTTGTACCCAA---CCAGGA-CTCA-TGG 93 consensus_14529#1 CAACCGCATTTCAAAACTTGAAACGAGGGAGAC--GAAGTGAGAGAGAGATGGAGAGGGC 58 consensus_14529#4 CAACCGCATTTNAAAACTTGAAACGAGGGAGAC--GAAGTNAGAGANAGATGGAGAGGGN 74 consensus_14529#3 ----------------------------GCGGA--GGAGGAGAGGAGCAATGGAGAGGGC 30 consensus_14529#0 GAGTGATATTTTTGGTCCTCCTCCAGAGATCCCTGCAAGGCCATTGGCTGCTCGCAATAT 660 consensus_14529#2 GAA--ATATTTTG---CCTCCTCCAGGAGATCC-GCAAGCCCAT--GCTGCTCGCAATAT 145 ** * consensus_14529#1 GGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCC 118 consensus_14529#4 GGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCC 134 consensus_14529#3 GGTGC-GGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGG 89 consensus_14529#0 GGAGCTG-CAAGGAAATC-TAGATTTT-GC-----ACTTCCACAACCGAGAAGCGTCCAC 712 consensus_14529#2 GGAGCTGGCAAGGAAATC-TAGATTTTTGC-----ACTTCCACAACCGAGAAGCGTCCAC 199 ** ** * **** * * * * * * * ** * * * * consensus_14529#1 GGGCCCCGACAATGCCGCGGCGGCGGCGGGCGCCGCCGCGCCG-CCTTCCTCGCGGCCCA 177 consensus_14529#4 GGGCCCCGACAATNCTGCGGCGGCGCGGTGCGCCCTTACNTAC-TGTTCCTCGN------ 187 consensus_14529#3 GCCCGACGCCCGCCTGCCNCCTTCGCCGTCGGCTTCTTCCANC-CCAGNCTCAAGGTAAG 148 consensus_14529#0 ACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACA-TCACGTTCAGTGAGGA 771 consensus_14529#2 ACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACAATCACGTTCAGTGAGGA 259 * * * * * ** consensus_14529#1 GCCTCAAGCCGGCCGGTGGGATCACGCCGGCGATGTTCGGAGCGCCGGTGACCGACCTGG 237 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 CTATGACTAAGCCNTACTCGAATNCTGCTCTGCTTCCCCGTGCNTTCGAGTGCGACACGC 208 consensus_14529#0 GCC--TGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGC 829 consensus_14529#2 GCACATGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGC 319 consensus_14529#1 AGGCCGAGGATCTGA-CCAAGAGGAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACC 296 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 GAGGCTTACTTTTTT-GAGGGTGCGTNTTGGTTGTTTGTNCTGGTGTTGTGGTGTNATGT 267 consensus_14529#0 AACAACATCTTCAAA-GAGGACGCTACCCCTGCATCAGCTGAGAAATCTCTGAGCTCAGC 888 consensus_14529#2 AACAACATCTTCAAAAGAGGACGCTACACCTGCATCAGCTGAGAAATCTCTGAGCTCAGC 379 consensus_14529#1 GGGAGTGGAATATTTTCTGCACAGGGTGCAAATGGAGATTCTGAAACTGGCTCCGGTGAC 356 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 CTTGG------------------------------------------------------- 272 consensus_14529#0 AAAGCTGAAGGAGATGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCC-GAG 947 consensus_14529#2 AAAGCTGAAGGAGATGA-CGGCAGTGACATCTTTGCTGATTGGACGGCAGCTCCCCCGAG 438 consensus_14529#1 TCTAATCCTCCCAGCAAGACATCATTAAGGATGTATCAGCAAACTGTAACTGGCACAAGT 416 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 ACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAAT 1007 consensus_14529#2 ACTTATTCT-CGGCCCGGGTTGTTCCCGCAAAGCCCACCACTTGGGTG-GCCGAAGGAAC 496 consensus_14529#1 CAGATATCATTTAGTGCTGAGGGGAGCGTGTCTCCGAAGAAGCCTTCCTCATTGCCTGAG 476 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 CGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGC 1067 consensus_14529#2 CAGCATTTGC-ACCGTGATTCTAATTCGCCCGCCAGGCCTTCACC--TAAATTCTTGGAA 553 consensus_14529#1 GTGGCGAAGCAGCGAGAGTTGAGTGGTACACTGGAGAGTGAAGCTGATGCTAAATTGAAG 536 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 ATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCC--CT 1125 consensus_14529#2 CTGGGCCTTAACTT--TTTTAACCCCTCAATTCGCCTTGAAAAGGTTCCCGTGGCCAATT 611 consensus_14529#1 AAGCAGAACTCGGAAGCAAAAAGCAAGGAGCTCAGCGGGAGTGATATATTTGGCCCACCT 596 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 GATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAA-- 1183 consensus_14529#2 GTTGCCTTCTTTCCCTGGGAACCCTGGGTTTCTTTGGAATTCCACTGGCCTGAAGGAAGG 671 consensus_14529#1 CCTGAGATTCCTTCTAGACCCTTAGCTGCTCGTAACCTGGAGCTGCAGGGAAATTTAGAT 656 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 TCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTT 1243 consensus_14529#2 CCTTGAATAATTCTTTGGCCCTG-GAATTAATCCAACCCTAAGGAAGGTCACAGAATCTG 730 consensus_14529#1 TTTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATCCTGCCGGA 716 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 TATTGGTTCATTTTTGTGAGCTCATGGTATCATCAGGAAATAATGTCTGTCTTGTATCAA 1303 consensus_14529#2 ACTCAGCTTATGTTTGTAACTTGACTTTAATCTCA----------TCTGTCTTATGGTAC 780 consensus_14529#1 GGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAGACCGCCAAGAAAATCCAT 776 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 ATTAACTTATTTGTGAGTTATGCAAAAGATAACGAAGGTATCTACAATACCATTTCCTCT 1363 consensus_14529#2 TTATGTATTAATCTCCCTTGGACCGAGACTGAAATAAGTTTTATTTGGTTCACTTTTTGT 840 consensus_14529#1 AACCAGAAGTTCCATGAGTTGACGGGCAACAACATCTTCAAGGAAGAAGCTCCCCCAGGC 836 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 TAAAAAAAAAAA------------------------------------------------ 1375 consensus_14529#2 GAAAAA------------------------------------------------------ 846 consensus_14529#1 TCGGCCGAGAAGTCCCTGAGCACGGCGAAGCTCAAGGAGATGAGTGGCAGCAACATCTTC 896 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 ------------------------------------------------------------ consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 GCCGATGGGAAGGTGGCCTCCCGGGACTACTTCGGAGGCGTCAGGAAGCCTCCTGGCGGC 956 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 ------------------------------------------------------------ consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 GGGAGCAGCATCGCGCTGGTCTGACGACTCGCCGGAAGAGTTCTGAATATGTAGTTTGTG 1016 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 ------------------------------------------------------------ consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 GCCAGTCTGTGTTTGTTGGCTGTTGTTTATCCATCATTCGAGCGAGATTTGTTAGTTGTT 1076 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 ------------------------------------------------------------ consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 GCATACTCACCTAAAGGGCTGGTCATTGTTCATCTCCGAACTTCAAATACCATTCACTTC 1136 consensus_14529#4 ------------------------------------------------------------ consensus_14529#3 ------------------------------------------------------------ consensus_14529#0 ------------------------------------------------------------ consensus_14529#2 ------------------------------------------------------------ consensus_14529#1 TCATCAAAAAAAAAAA 1152 consensus_14529#4 ---------------- consensus_14529#3 ---------------- consensus_14529#0 ---------------- consensus_14529#2 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||