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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1375 fasta sequence
[CGCTCGCATTTTTTTTTCAGCTCCGCGGAAGGAACGAAACCCAACCCAAGCGAGGCAAAAGCGGCGGCGGCGGAGGAGTAGAGGAGCAATGGAGAGGGCGGTGCCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCGCCGCCGCCGCGGCCTCGCCGGTCGCCTCCTCCCGCCCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGC-TGAGAATAGTGAAAATGATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTGGAATAAGCCAAATCTCATTCAGTGCTGATGGAAGTGTTTCTCCAAAGAAGCCATCGTCATTACCTGAGGTGGCTAAGCAGCGAGAGCTTAGTGGTACA-CTGGAGACTGA-TGCTG-AGGCTAAAATGAATAAGCAGCATTCTGAAGCCAAGAGCAAGG-AGCTCAGTGGG-AGTGATATTTTTGGTCCTCCTCCAGAGATCCCTGCAAGGCCATTGGCTGCTCGCAATATGGAGCTGCAAGGAAATCTAGATTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACATCACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC-TTCAAAGAGGACGCTACCCCTGCA-TCAGCTGAGAAATCTCTGAGCTCAGC-AAAGCTGAAGGAGA-TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAGCTCATGGTATCATCAGGAAATAATGTCTGTCTTGTATCAAATTAACTTATTTGTGAGTTATGCAAAAGATAACGAAGGTATCTACAATACCATTTCCTCTTAAAAAAAAAAA]
[+] EMBL AK103788 [CGCTCGCATTTTTTTTTCAGCTCCGCGGAAGGAACGAAACCCAACCCAAGCGAGGCAAAAGCGGCGGCGGCGGAGGAGTAGAGGAGCAATGGAGAGGGCGGTGCCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCGCCGCCGCCGCGGCCTCGCCGGTCGCCTCCTCCCGCCCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGC TGAGAATAGTGAAAATGATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTGGAATAAGCCAAATCTCATTCAGTGCTGATGGAAGTGTTTCTCCAAAGAAGCCATCGTCATTACCTGAGGTGGCTAAGCAGCGAGAGCTTAGTGGTACA CTGGAGACTGA TGCTG AGGCTAAAATGAATAAGCAGCATTCTGAAGCCAAGAGCAAGG AGCTCAGTGGG AGTGATATTTTTGGTCCTCCTCCAGAGATCCCTGCAAGGCCATTGGCTGCTCGCAATATGGAGCTGCAAGGAAATCTAGATTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACATCACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAGCTCATGGTATCATCAGGAAATAATGTCTGTCTTGTATCAAATTAACTTATTTGTGAGTTATGCAAAAGATAACGAAGGTATCTACAATACC ]
[+] EMBL AK101129 [ TGGAAAGGGGGGGGCGGGTGAGGAAGCCGCACACCTCGACGGGGGACCTGCTCACGTGGTCGGCGAGGGGGCCCGACGCCGCCGCCGCCGCGGCCTCGCCGGTCGCCTCCTCCCGCCCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGC TGAGAATAGTGAAAATGATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTGGAATAAGCCAAATCTCATTCAGTGCTGATGGAAGTGTTTCTCCAAAGAAGCCATCGTCATTACCTGAGGTGGCTAAGCAGCGAGAGCTTAGTGGTACA CTGGAGACTGA TGCTG AGGCTAAAATGAATAAGCAGCATTCTGAAGCCAAGAGCAAGG AGCTCAGTGGG AGTGATATTTTTGGTCCTCCTCCAGAGATCCCTGCAAGGCCATTGGCTGCTCGCAATATGGAGCTGCAAGGAAATCTAGATTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACATCACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTT ]
[+] EMBL AU085978 [ TGGAGAGGGCGGTGCCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCGCCGCCGCCGCGGACTCGCCGGTCGCCTCCTCCCGCCCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGC TGAGAATAGTGAAAATGATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTGGAATAAGCC AATCTCATTCAGTGCTGATGGAANTGTTTCTCCAAAGAAGCCATCGT ]
[+] EMBL AU090588 [ TGGAGAGGGCGGTGCCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCGNCGCCGCCGCGGCCTCGCCGGTCGCCTCCTCCCG CCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGCTTGAGAATAGTGAAAATGATGATTCAGAGGCTTCAAAT CTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTG ]
[+] EMBL AU062687 [ GGGGATCACGCCGGCGATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAAATTTTNCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGC TGAGAATAGTGAAAATNATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCAGCAAACTGTAACTGGAATAAGCCAAATCTCATTCAGTGCTGATGGAAGTGTTTCTCCAAAGAAGCCATCGTCATTACCTGAGGTGGCTAAGCAGCGAGAG TTAGTGGTACANTTNGAGACTGATTGCTGNAGGCTAAAATGANTA ]
[+] EMBL AU090589 [ CAAGAGCAAGGAAGCCCAGTGGGAAGTGATATTTTTGGTCCTCNTCCAGAGATCCCTGCAAGGCCATTGGCTGCTCGCAATATGNAGCTGCAAGGAAATCTAGATTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACATCACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCAaaaaaaa ]
[+] EMBL AU030614 [ CAATATGGAGCTGCAAGGAAATCTAGATTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACATCACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAaaaaaa ]
[+] EMBL AU029951 [ CACGTTCAGTGAGGAGCCTGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCANTCCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAG AGCATTGCACTGATCTAATCGCCGCAG TGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGGCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGT AACTTGACTTAATCTCATCTGTCTAAGGGac ]
[+] EMBL AU100699 [ CACGTTCAGTGAGGAGCCTGTAGTCAAGACGTNAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATC TTCAAAGAGGACGCTACCCCTGCA TCAGCTGAGAAATCTCTGAGCTCAGC AAAGCTGAAGGAGA TGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAGCTCATGGTATCATCAGGAAATAATGTCTGTCTTGTATCAAATTAACTTATTTGTGAGTTATGCAAAAGATAACGAAGGTATCTACAATACCATTTCCTCTTAAAAAAAAAAA]
[+] EMBL AU091382 [ GCAACAACATCTTTCAAAGAGGACGCTACCCCTGCATTCAGCTGAGAAATCTCTGAGCTCAGCAAAAGCTGAAGGAGATTGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAaaaaa ]
[+] EMBL AU166560 [ GTGACATCTTTGCTGATGGAGCGGCAGCTCCCCGAGACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGNACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTTTATTGGTTCATTTTTGTGAGCTCATGGTATCATCAGGAAATAATGTCTGTCTTGTATCAAATTAACTTATTTGTGAGTTATGCAAAAGATAACGAAGGTAaaaaaaaa ]
consensusID : consensus_14529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1152 fasta sequence
[CAACCGCATTTCAAAACTTGAAACGAGGGAGACGAAGTGAGAGAGAGATGGAGAGGGCGGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCCGGGCCCCGACAATGCCGCGGCGGCGGCGGGCGCCGCCGCGCCGCC-TTCCTCGCGGCCCAGCCTCAAGCCGGCCGGTGGGATCACGCCGGCGATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAGGAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACCGGGAGTGGAATATTTTCTGCACAGGGTGCAAATGGAGATTCTGAAAC-TGGCTCCGGTGACTCTAATCC-TCCCAGCAAGACATCATTAAGGATGTATCAGCAAACTGTAACTGGCACAAGTCAGATATCATTTAGTGCTGAGGGGAGCGTGTCTCCGAAGAAGCCTTCCTCATTGCCTGAGGTGGCGAAGCAGCGAGAGTTGAGTGGTACACTGGAGAGTGAAGCTGATGCTAAATTGAAGAAGCAGAACTCGGAAGCAAAAAGCAAGGAGCTCAGCGGGAGTGATATATTTGGCCCACCTCCTGAGATTCCTTCTAGACCCTTAGCTGCTCGTAACCTGGAGCTGCAGGGAAATTTAGATTTTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATCCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAGACCG-CCAAGAAAATCCATAACCAGAAGTTCCATGAGTTGACGGGCAACAACATCTTCAAGGAAGAAGCTCCCCCAGGCTCGGCCGAGAAGTCCCTGAGCACGGCGAAGCTCAAGGAGATGAGTGGCAGCAACATCTTCGCCGATGGGAAGGTGGCCTCCCGGGACTACTTCGGAGGCGTCAGGAAGCCTCCTGGCGGCGGGAGCAGCATCGCGCTGGTCTGACGACTCGCCGGAAGAGTTCTGAATATGTAGTTTGTGGCCAGTCTGTGTTTGTTGGCTGTTGTTTATCCATCATTCGAGCGAGATTTGTTAGTTGTTGCATACTCACCTAAAGGGCTGGTCATTGTTCATCTCCGAACTTCAAATACCATTCACTTCTCATCAAAAAAAAAAA]
[+] EMBL AK059246 [CAACCGCATTTCAAAACTTGAAACGAGGGAGACGAAGTGAGAGAGAGATGGAGAGGGCGGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCCGGGCCCCGACAATGCCGCGGCGGCGGCGGGCGCCGCCGCGCCGCC TTCCTCGCGGCCCAGCCTCAAGCCGGCCGGTGGGATCACGCCGGCGATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAGGAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACCGGGAGTGGAATATTTTCTGCACAGGGTGCAAATGGAGATTCTGAAAC TGGCTCCGGTGACTCTAATCC TCCCAGCAAGACATCATTAAGGATGTATCAGCAAACTGTAACTGGCACAAGTCAGATATCATTTAGTGCTGAGGGGAGCGTGTCTCCGAAGAAGCCTTCCTCATTGCCTGAGGTGGCGAAGCAGCGAGAGTTGAGTGGTACACTGGAGAGTGAAGCTGATGCTAAATTGAAGAAGCAGAACTCGGAAGCAAAAAGCAAGGAGCTCAGCGGGAGTGATATATTTGGCCCACCTCCTGAGATTCCTTCTAGACCCTTAGCTGCTCGTAACCTGGAGCTGCAGGGAAATTTAGATTTTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATCCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAGACCG CCAAGAAAATCCATAACCAGAAGTTCCATGAGTTGACGGGCAACAACATCTTCAAGGAAGAAGCTCCCCCAGGCTCGGCCGAGAAGTCCCTGAGCACGGCGAAGCTCAAGGAGATGAGTGGCAGCAACATCTTCGCCGATGGGAAGGTGGCCTCCCGGGACTACTTCGGAGGCGTCAGGAAGCCTCCTGGCGGCGGGAGCAGCATCGCGCTGGTCTGACGACTCGCCGGAAGAGTTCTGAATATGTAGTTTGTGGCCAGTCTGTGTTTGTTGGCTGTTGTTTATCCATCATTCGAGCGAGATTTGTTAGTTGTTGCATACTCACCTAAAGGGCTGGTCATTGTTCATCTCCGAACTTCAAATACCATTC ]
[+] EMBL C91748 [ CAAAACTTGAAACGAGGGAGACGAAGTGAGAGAGAGATGGAGAGGGCGGTGCCGGTGCGGAAGACGCACGNCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCCGGGCCCCGACAATGCCGCGGCGGC GCGGGCG CG CGC NCGCCTTTCCTCGCGGCCCAGCCTCAAGCCGGCCGGTGGGATCACGCCGGCGATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAGGAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACCCGGAGTGGAATATTTTCTNCACAAGGT CAAATGGAGATTCTGAAACTTGGCTCCGGTGACTCTAATCCTTCCCAGAAAG CATCATTAAGGATGTATCAG AAACTGTAACTTGCATAAGTCAG TATCATTTAGTTCTTAGGGGAGCGTGTTTCCGAAG ]
[+] EMBL AU172842 [ CATGTTTGGGGAGGAGCCGGCGGTCAAGACCGCCCAAAAAAATCCATAACCAGAAGTTCCATGAGTTGACGGGCAACAACATCTTCAAGGAAGAAGCTCCCCCAGGCTCGGCCGAGAAGTCCCTGAGCACGGCGAAGCTCAAGGAGATGAGTGGCAGCAACATCTTCGCCGATGGGAAGGTGGCCTCCCGGGACTACTTCGGAGGCGTCAGGAAGCCTCCTGGCGGCGGGAGCAGCATCGCGCTGGTCTGACGACTCGCCGGAAGAGTTCTGAATATGTAGTTTGTGGCCAGTCTGTGTTTGTTGGCTGTTGTTTATCCATCATTCGAGCGAGATTTGTTAGTTGTTGCATACTCACCTAAAGGGCTGGTCATTGTTCATCTCCGAACTTCAAATACCATTCACTTCTCATCAAAAAAAAAAA]
consensusID : consensus_14529#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 846 fasta sequence
[TTCCAACCCTGTAATCCAGGGTAAGCCGAGGTATTGTGACCTGGGGACTATTGGCTTAATTGAAACCACTTTGTACCCAACCAGGACTCATGGGAAATATTTTGCCTCCTCCAGGAGATCCGCAAGCCCATGCTGCTCGCAATATGGAGCTGGCAAGGAAATCTAGATTTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACAATCACGTTCAGTGAGGAGCACATGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATCTTCAAAAGAGGACGCTACACCTGCATCAGCTGAGAAATCTCTGAGCTCAGCAAAGCTGAAGGAGATGACGGCAGTGACATCTTTGCTGATTGGACGGCAGCTCCCCCGAGACTTATTCTCGGCCCGGGTTGTTCCCGCAAAGCCCACCACTTGGGTGGCCGAAGGAACCAGCATTTGCACCGTGATTCTAATTCGCCCGCCAGGCCTTCACCTAAATTCTTGGAACTGGGCCTTAACTTTTTTAACCCCTCAATTCGCCTTGAAAAGGTTCCCGTGGCCAATTGTTGCCTTCTTTCCCTGGGAACCCTGGGTTTCTTTGGAATTCCACTGGCCTGAAGGAAGGCCTTGAATAATTCTTTGGCCCTGGAATTAATCCAACCCTAAGGAAGGTCACAGAATCTGACTCAGCTTATGTTTGTAACTTGACTTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCCTTGGACCGAGACTGAAATAAGTTTTATTTGGTTCACTTTTTGTGAAAAA]
[+] EMBL BI805391 [TTCCAACCCTGTAATCCAGGGTAAGCCGAGGTATTGTGACCTGGGGACTATTGGCTTAATTGAAACCACTTTGTACCCAACCAGGACTCATGGGAAATATTTTGCCTCCTCCAGGAGATCCGCAAGCCCATGCTGCTCGCAATATGGAGCTGGCAAGGAAATCTAGATTTTTGCACTTCCACAACCGAGAAGCGTCCACACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACAATCACGTTCAGTGAGGAGCACATGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGCAACAACATCTTCAAAAGAGGACGCTACACCTGCATCAGCTGAGAAATCTCTGAGCTCAGCAAAGCTGAAGGAGATGACGGCAGTGACATCTTTGCTGATTGGACGGCAGCTCCCCCGAGACTTATTCTCGGCCCGGGTTGTTCCCGCAAAGCCCACCACTTGGGTGGCCGAAGGAACCAGCATTTGCACCGTGATTCTAATTCGCCCGCCAGGCCTTCACCTAAATTCTTGGAACTGGGCCTTAACTTTTTTAACCCCTCAATTCGCCTTGAAAAGGTTCCCGTGGCCAATTGTTGCCTTCTTTCCCTGGGAACCCTGGGTTTCTTTGGAATTCCACTGGCCTGAAGGAAGGCCTTGAATAATTCTTTGGCCCTGGAATTAATCCAACCCTAAGGAAGGTCACAGAATCTGACTCAGCTTATGTTTGTAACTTGACTTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCCTTGGACCGAGACTGAAATAAGTTTTATTTGGTTCACTTTTTGTGAAAAA]
consensusID : consensus_14529#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence
[GCGGAGGAGGAGAGGAGCAATGGAGAGGGCGGTGCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCCGCCTGCCNCCTTCGCCGTCGGCTTCTTCCANCCCAGNCTCAAGGTAAGCTATGACTAAGCCNTACTCGAATNCTGCTCTGCTTCCCCGTGCNTTCGAGTGCGACACGCGAGGCTTACTTTTTTGAGGGTGCGTNTTGGTTGTTTGTNCTGGTGTTGTGGTGTNATGTCTTGG]
[+] EMBL C26326 [GCGGAGGAGGAGAGGAGCAATGGAGAGGGCGGTGCGGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCCGCCTGCCNCCTTCGCCGTCGGCTTCTTCCANCCCAGNCTCAAGGTAAGCTATGACTAAGCCNTACTCGAATNCTGCTCTGCTTCCCCGTGCNTTCGAGTGCGACACGCGAGGCTTACTTTTTTGAGGGTGCGTNTTGGTTGTTTGTNCTGGTGTTGTGGTGTNATGTCTTGG]
consensusID : consensus_14529#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence
[CGAGGCCGCAAGGGCGCAACCGCATTTNAAAACTTGAAACGAGGGAGACGAAGTNAGAGANAGATGGAGAGGGNGGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCCGGGCCCCGACAATNCTGCGGCGGCGCGGTGCGCCCTTACNTACTGTTCCTCGN]
[+] EMBL OSR19531A [CGAGGCCGCAAGGGCGCAACCGCATTTNAAAACTTGAAACGAGGGAGACGAAGTNAGAGANAGATGGAGAGGGNGGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCCGGGCCCCGACAATNCTGCGGCGGCGCGGTGCGCCCTTACNTACTGTTCCTCGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14529#1 ------------------------------------------------------------
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 CGCTCGCATTTTTTTTTCAGCTCCGCGGAAGGAACGAAACCCAACCCAAGCGAGGCAAAA 60
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 ------------------------------------------------------------
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 GCGGCGGCGGCGGAGGAGTAGAGGAGCAATGGAGAGGGCGGTGCCGGTGAGGAAGCCGCA 120
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 ------------------------------------------------------------
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 CACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGGGCCCGACGCCGCCGCCGCCGC 180
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 ------------------------------------------------------------
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 GGCCTCGCCGGTCGCCTCCTCCCGCCCCAGCCTCAAGCCGGCCGGGGGGATCACGCCGGC 240
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 ------------------------------------------------------------
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 GATGTTCGGCGCGCCGGTGAGCGAGAAGGAGGCGGAGGATCTGAGCAAGAGTGAACGAAA 300
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 ------------------------------------------------------------
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 ATTTTGCTCGGGCTCAAAGTTAAAAGAAATGACTGGAAGTGGGATATTCGCTGAGAATAG 360
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 ------------------------------------------------------------
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 TGAAAATGATGATTCAGAGGCTTCAAATCCTGCAAACAAAACTTCTGTAAGGATGTATCA 420
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 ------------------------------------------------------------
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 GCAAACTGTAACTGGAATAAGCCAAATCTCATTCAGTGCTGATGGAAGTGTTTCTCCAAA 480
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 ------------------------------------------------------------
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 GAAGCCATCGTCATTACCTGAGGTGGCTAAGCAGCGAGAGCTTAGTGGTACACTGGAGAC 540
consensus_14529#2 --TTCCAACCCTGTAATCCAGGGTA-------AGCCGAGGTATTGTGAC---CTGGGGAC 48
consensus_14529#1 ------------------------------------------------------------
consensus_14529#4 --------------------------------------------CGAGGCCGCAAGGGCG 16
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 TGATGCTGAGGCTAAAATGAATAAGCAGCATTCTGAAGCCAAGAGCAAGGAGCTCAGTGG 600
consensus_14529#2 TATTG-----GCTTAATTGAA-----ACCACTTTGTACCCAA---CCAGGA-CTCA-TGG 93
consensus_14529#1 CAACCGCATTTCAAAACTTGAAACGAGGGAGAC--GAAGTGAGAGAGAGATGGAGAGGGC 58
consensus_14529#4 CAACCGCATTTNAAAACTTGAAACGAGGGAGAC--GAAGTNAGAGANAGATGGAGAGGGN 74
consensus_14529#3 ----------------------------GCGGA--GGAGGAGAGGAGCAATGGAGAGGGC 30
consensus_14529#0 GAGTGATATTTTTGGTCCTCCTCCAGAGATCCCTGCAAGGCCATTGGCTGCTCGCAATAT 660
consensus_14529#2 GAA--ATATTTTG---CCTCCTCCAGGAGATCC-GCAAGCCCAT--GCTGCTCGCAATAT 145
** *
consensus_14529#1 GGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCC 118
consensus_14529#4 GGTGCCGGTGCGGAAGACGCACGCCTCGACGGCCGGCCTGCTCAGCTGGTCGGAGTCGCC 134
consensus_14529#3 GGTGC-GGTGAGGAAGCCGCACACCTCGACGGCGGACCTGCTCACGTGGTCGGCGACGGG 89
consensus_14529#0 GGAGCTG-CAAGGAAATC-TAGATTTT-GC-----ACTTCCACAACCGAGAAGCGTCCAC 712
consensus_14529#2 GGAGCTGGCAAGGAAATC-TAGATTTTTGC-----ACTTCCACAACCGAGAAGCGTCCAC 199
** ** * **** * * * * * * * ** * * * *
consensus_14529#1 GGGCCCCGACAATGCCGCGGCGGCGGCGGGCGCCGCCGCGCCG-CCTTCCTCGCGGCCCA 177
consensus_14529#4 GGGCCCCGACAATNCTGCGGCGGCGCGGTGCGCCCTTACNTAC-TGTTCCTCGN------ 187
consensus_14529#3 GCCCGACGCCCGCCTGCCNCCTTCGCCGTCGGCTTCTTCCANC-CCAGNCTCAAGGTAAG 148
consensus_14529#0 ACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACA-TCACGTTCAGTGAGGA 771
consensus_14529#2 ACATCAGTGAAAGTATCCAATCCTGCTGGAGGTCCAAGCAACAATCACGTTCAGTGAGGA 259
* * * * * **
consensus_14529#1 GCCTCAAGCCGGCCGGTGGGATCACGCCGGCGATGTTCGGAGCGCCGGTGACCGACCTGG 237
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 CTATGACTAAGCCNTACTCGAATNCTGCTCTGCTTCCCCGTGCNTTCGAGTGCGACACGC 208
consensus_14529#0 GCC--TGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGC 829
consensus_14529#2 GCACATGTAGTCAAGACGTCAAAGAAAATCCATAACCAGAAGTTCCAAGAGTTGACAGGC 319
consensus_14529#1 AGGCCGAGGATCTGA-CCAAGAGGAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACC 296
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 GAGGCTTACTTTTTT-GAGGGTGCGTNTTGGTTGTTTGTNCTGGTGTTGTGGTGTNATGT 267
consensus_14529#0 AACAACATCTTCAAA-GAGGACGCTACCCCTGCATCAGCTGAGAAATCTCTGAGCTCAGC 888
consensus_14529#2 AACAACATCTTCAAAAGAGGACGCTACACCTGCATCAGCTGAGAAATCTCTGAGCTCAGC 379
consensus_14529#1 GGGAGTGGAATATTTTCTGCACAGGGTGCAAATGGAGATTCTGAAACTGGCTCCGGTGAC 356
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 CTTGG------------------------------------------------------- 272
consensus_14529#0 AAAGCTGAAGGAGATGAGCGGCAGTGACATCTTTGCTGATGGAGCGGCAGCTCCCC-GAG 947
consensus_14529#2 AAAGCTGAAGGAGATGA-CGGCAGTGACATCTTTGCTGATTGGACGGCAGCTCCCCCGAG 438
consensus_14529#1 TCTAATCCTCCCAGCAAGACATCATTAAGGATGTATCAGCAAACTGTAACTGGCACAAGT 416
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 ACTATCTCGGCGGTGTCCGCAAGCCCCCTGGTGGCGAGAGCAGCATTGCACTGATCTAAT 1007
consensus_14529#2 ACTTATTCT-CGGCCCGGGTTGTTCCCGCAAAGCCCACCACTTGGGTG-GCCGAAGGAAC 496
consensus_14529#1 CAGATATCATTTAGTGCTGAGGGGAGCGTGTCTCCGAAGAAGCCTTCCTCATTGCCTGAG 476
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 CGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGC 1067
consensus_14529#2 CAGCATTTGC-ACCGTGATTCTAATTCGCCCGCCAGGCCTTCACC--TAAATTCTTGGAA 553
consensus_14529#1 GTGGCGAAGCAGCGAGAGTTGAGTGGTACACTGGAGAGTGAAGCTGATGCTAAATTGAAG 536
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 ATGTGCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCC--CT 1125
consensus_14529#2 CTGGGCCTTAACTT--TTTTAACCCCTCAATTCGCCTTGAAAAGGTTCCCGTGGCCAATT 611
consensus_14529#1 AAGCAGAACTCGGAAGCAAAAAGCAAGGAGCTCAGCGGGAGTGATATATTTGGCCCACCT 596
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 GATATCATCTAGAGTCAGCAGAATCTGACTCAGCTTATGTGTTGTAAACTTGACTTAA-- 1183
consensus_14529#2 GTTGCCTTCTTTCCCTGGGAACCCTGGGTTTCTTTGGAATTCCACTGGCCTGAAGGAAGG 671
consensus_14529#1 CCTGAGATTCCTTCTAGACCCTTAGCTGCTCGTAACCTGGAGCTGCAGGGAAATTTAGAT 656
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 TCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGACTGAAATAAGTTT 1243
consensus_14529#2 CCTTGAATAATTCTTTGGCCCTG-GAATTAATCCAACCCTAAGGAAGGTCACAGAATCTG 730
consensus_14529#1 TTTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATCCTGCCGGA 716
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 TATTGGTTCATTTTTGTGAGCTCATGGTATCATCAGGAAATAATGTCTGTCTTGTATCAA 1303
consensus_14529#2 ACTCAGCTTATGTTTGTAACTTGACTTTAATCTCA----------TCTGTCTTATGGTAC 780
consensus_14529#1 GGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAGACCGCCAAGAAAATCCAT 776
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 ATTAACTTATTTGTGAGTTATGCAAAAGATAACGAAGGTATCTACAATACCATTTCCTCT 1363
consensus_14529#2 TTATGTATTAATCTCCCTTGGACCGAGACTGAAATAAGTTTTATTTGGTTCACTTTTTGT 840
consensus_14529#1 AACCAGAAGTTCCATGAGTTGACGGGCAACAACATCTTCAAGGAAGAAGCTCCCCCAGGC 836
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 TAAAAAAAAAAA------------------------------------------------ 1375
consensus_14529#2 GAAAAA------------------------------------------------------ 846
consensus_14529#1 TCGGCCGAGAAGTCCCTGAGCACGGCGAAGCTCAAGGAGATGAGTGGCAGCAACATCTTC 896
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 ------------------------------------------------------------
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 GCCGATGGGAAGGTGGCCTCCCGGGACTACTTCGGAGGCGTCAGGAAGCCTCCTGGCGGC 956
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 ------------------------------------------------------------
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 GGGAGCAGCATCGCGCTGGTCTGACGACTCGCCGGAAGAGTTCTGAATATGTAGTTTGTG 1016
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 ------------------------------------------------------------
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 GCCAGTCTGTGTTTGTTGGCTGTTGTTTATCCATCATTCGAGCGAGATTTGTTAGTTGTT 1076
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 ------------------------------------------------------------
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 GCATACTCACCTAAAGGGCTGGTCATTGTTCATCTCCGAACTTCAAATACCATTCACTTC 1136
consensus_14529#4 ------------------------------------------------------------
consensus_14529#3 ------------------------------------------------------------
consensus_14529#0 ------------------------------------------------------------
consensus_14529#2 ------------------------------------------------------------
consensus_14529#1 TCATCAAAAAAAAAAA 1152
consensus_14529#4 ----------------
consensus_14529#3 ----------------
consensus_14529#0 ----------------
consensus_14529#2 ----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||