|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1609 fasta sequence
[CCCGGCCGACGCCGCGTCTACCCCATCCCCCCCCCCCCCCGCCCCCTCCTCGTCGGCGCCACCGCCGCCGCAGGCTCGCCGCCTAGGGTTCCTTCCACTCTCGGCGCAAGGGGCGTAGGGAGGTTGAGAGGGAGCGAGCGAGCGATGGAGGGGTGGGTGGCGACGGTCGCGTACACGGGCACGGCGCTGGCGTGCGCCGCGGCGGCGACGGTGGTGGCGCTGCGCCTCGTCTACCGCCACCTCCTCCACTACGCCGAGCCCACCCACCAGCGCTTCATCGTCCGCATCATCCTCATGGTCCCGGTATATGCTGTGATGTCATTTCTTTCCCTTGTACTACCTGGTAGCGCCATCTACTTCAACTCTATTCGCGAAATCTATGACGCATGGGTCATCTACAATTTCTTTTCACTCTGCTTGGCATGGGTAGGAGGTCCTGGTGCCGTGGTAGTAAGTTTGACTGGCCGATCTCTGAAACCGTCGTGGTTCATGATGACTTGCTGTTTTTCAGCTGTTCCTCTAGATGGGCGTTTTATACGGAGATGCAAACAGGGTTGTCTGCAGTTTGTGATCCTCAAGCCAATATTGGTTGTTATAACCTTCATTCTTTATGCCAAAGGAAAATATGAAGATGGAAATTTTAGTGTCAATCAATCCTATCTATACATAACTATCATCTACACAATTTCGTATTCGATGGCACTGTTTGCTCTAGCACTGTTCTACGTAGCATGCAGAGATCTTCTTCAGCCATATAATCCTGTTCCAAAATTTATCATTATCAAATCAGTGGTGTTCCTCACCTACTGGCAGGGCGTCCTGGTTTTCCTTGCTGCGAAA-TCTAGATTCATAAAAAATGCTGAAGAAGCTGCTTATCTCCAAAATTTTGTGCTTTGTGTTGAGATGCTCATAGCAGCTATTGGGCACCAATTTGCCTTCTCGTACAAGGAGTATGCTGGTTCCAATGCCCGTCCTTTCGGTGGATTCAGGGGAAGCCTTTTTCATGCTCTGAAATTCAATGACTTCTATCATGATACTGTGCACCAGTTTGCACCAACATATCATGAATATGTGCTCTACAGTAACGAGGAAGAGGATGAACCGACAAAATATAGCTCTGCCAGTGTTGTGTCAACAGTACAGGACATACAGCTGGTAGAAGTCTCTGTCGTGGACTCGAAAGCTCCGTTGGCATCAGTCATCCTAACACATGAGGCAGATAAAACAATGCCCTCCCATGGCATGGAAGAAACTGTTGCCCCTTCAGAGCCATACGACCTCTCAAACTTGGTTGATGTAGAACTGTCCAATTACTCTGCTGAGGTCCCTGCAATTCCTGATGTGGGGAAACAATGATATTGTGTGATATATATCCGTCAGATGTAAATGGGTAGCGCTCACGAGTTGTTCATAGATTACACTGTAAAGGTATCCTTGTAATCCTTTGTTTCTGCCAATTTTTCCCCGTTGCTAGGGACGTGCTGATATCTTTGGTTCAAATTGAGCTAAACTGACAGATTAGCTGATGGTGTCAAGTAAATTTGTAATGTAGGGAGAAGAGAATGTAACATGTTTCCCATTTTGTGTTNCTGATAAACCATGTCTGCAA]
[+] EMBL AK068368 [CCCGGCCGACGCCGCGTCTACCCCATCCCCCCCCCCCCCCGCCCCCTCCTCGTCGGCGCCACCGCCGCCGCAGGCTCGCCGCCTAGGGTTCCTTCCACTCTCGGCGCAAGGGGCGTAGGGAGGTTGAGAGGGAGCGAGCGAGCGATGGAGGGGTGGGTGGCGACGGTCGCGTACACGGGCACGGCGCTGGCGTGCGCCGCGGCGGCGACGGTGGTGGCGCTGCGCCTCGTCTACCGCCACCTCCTCCACTACGCCGAGCCCACCCACCAGCGCTTCATCGTCCGCATCATCCTCATGGTCCCGGTATATGCTGTGATGTCATTTCTTTCCCTTGTACTACCTGGTAGCGCCATCTACTTCAACTCTATTCGCGAAATCTATGACGCATGGGTCATCTACAATTTCTTTTCACTCTGCTTGGCATGGGTAGGAGGTCCTGGTGCCGTGGTAGTAAGTTTGACTGGCCGATCTCTGAAACCGTCGTGGTTCATGATGACTTGCTGTTTTTCAGCTGTTCCTCTAGATGGGCGTTTTATACGGAGATGCAAACAGGGTTGTCTGCAGTTTGTGATCCTCAAGCCAATATTGGTTGTTATAACCTTCATTCTTTATGCCAAAGGAAAATATGAAGATGGAAATTTTAGTGTCAATCAATCCTATCTATACATAACTATCATCTACACAATTTCGTATTCGATGGCACTGTTTGCTCTAGCACTGTTCTACGTAGCATGCAGAGATCTTCTTCAGCCATATAATCCTGTTCCAAAATTTATCATTATCAAATCAGTGGTGTTCCTCACCTACTGGCAGGGCGTCCTGGTTTTCCTTGCTGCGAAA TCTAGATTCATAAAAAATGCTGAAGAAGCTGCTTATCTCCAAAATTTTGTGCTTTGTGTTGAGATGCTCATAGCAGCTATTGGGCACCAATTTGCCTTCTCGTACAAGGAGTATGCTGGTTCCAATGCCCGTCCTTTCGGTGGATTCAGGGGAAGCCTTTTTCATGCTCTGAAATTCAATGACTTCTATCATGATACTGTGCACCAGTTTGCACCAACATATCATGAATATGTGCTCTACAGTAACGAGGAAGAGGATGAACCGACAAAATATAGCTCTGCCAGTGTTGTGTCAACAGTACAGGACATACAGCTGGTAGAAGTCTCTGTCGTGGACTCGAAAGCTCCGTTGGCATCAGTCATCCTAACACATGAGGCAGATAAAACAATGCCCTCCCATGGCATGGAAGAAACTGTTGCCCCTTCAGAGCCATACGACCTCTCAAACTTGGTTGATGTAGAACTGTCCAATTACTCTGCTGAGGTCCCTGCAATTCCTGATGTGGGGAAACAATGATATTGTGTGATATATATCCGTCAGATGTAAATGGGTAGCGCTCACGAGTTGTTCATAGATTACACTGTAAAGGTATCCTTGTAATCCTTTGTTTCTGCCAATTTTTCCCCGTTGCTAGGGACGTGCTGATATCTTTGGTTCAAATTGAGCTAAACTGACAGATTAGCTGATGGTGTCAAGTAAATTTGTAATGTAGGGAGAAGAGAATGTAA ]
[+] EMBL AF074726 [ CCTGGTGCCGTGGTAGTAAGTTTGACTGGCCGATCTCTGAAACCGTCATGGTTCATGATGACTTGCTGTTTTTCAGCTGTTCCTCTAGATGGGCGTTTTATACGGAGATGCAAACAGGGTTGTCTGCAGTTTGTGATCCTCAAGCCAATATTGGTTGTTATAACCTTCATTCTTTATGCCAAAGGAAAATATGAAGATGGAAATTTTAGTGTCAATCAATCCTATCTATACATAANTATNATCTACACAATTTCGTATTCGATGGCACTGTTTGCTCTAGCACTGTTCTACGTANCATGCAGAGATCTTCTTCAGCCATATAATCCTGTTCCAAAATTTATCATTATCAAATCAGTGGTGTTCCTCACCTACTGGCANGGCGTCCTGGTTTTCCTTGCTGCGAAANTCTAGATTCATAna ]
[+] EMBL BQ908291 [ AGATTAAAC ATGCCCTCCCATGGCATGGAAGAAACTGTTGCCCCTTCAGAGCCATACGACCTCTC AACTTGGTTGATGTAGAACTGTCC ATTACTCTGCTGAGGTCCCT C ATTCCTGATGTGGGGAAAC ATGATATTGTGTGATATATATCCGTCAGATGTAAATGGGTAGCGCTCACGAGTTGTTCATAGATTACACTGTAAAGGTATCCTTGTAATCCTTTGTTTCT CC ATTTTTCCCCGTTGCTAGGGACGTGCTGATATCTTTGGTTC AATTGAGCTAAACTGACAGATTAGCTGATGGTGTCAAGTAAATTTGTAATGTAGGGAGAAGAGAATGTAACATGTTTCCCATTTTGTGTTNCTGATAAACCATGTCTGCAA]
consensusID : consensus_14532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1601 fasta sequence
[CCTCCTCCTCCTCCTTCCCCAACCACTCGCAACCAAAGGCGCACCAAACCGGAGCCAATCCGAGCGCTCCGGCGGCGGAGGCGGCGGCGGCCGGACCTACTCGCTGCCGTGGGTGGGGGCTGGGAGGGAGCGGGCTGGTGGCTCGTCCCGTCCGCGATGGACTGGGCGGCGGCGGGGTACACGGCGGCGGCGCTGGTGTGCGCCGCGGCGGCCACCGTCATCGCGCTCGTGCACATCTACCGCCACCTCCTCCACTACGCGGAGCCCATCTACCAGCGATTCATCGTCCGCCTCATCTTCATGGTCCCGGTCTATGCCGTGATGTCGTTCCTTTCCCTTATCTTACCAGATAATTCAATATATTTTAATTCTATTCGAGAGATTTATGATGCTTGGGTCATCTACAATTTCTTTTCACTTTGCTTGGCATGGGTTGGAGGTCCTGGTGCTGTGGTGGTAAGTTTGAATGGGCGAACCCTGAAGCCATCGTGGTTTCTGATGACTTGCTGTTTTCCAGCTATTCCTCTAGATGGGCGTTTTATTCGGAGATGCAAACAAGGCTGTTTGCAGTTTGTGATTCTTAAGCCTATTTTGGTGGTTATTACCTTCATACTTTATGCGAAAGGAAAATACGCAGATGGAAACTTTAGTGTCAAGCAATCCTATCTATACATTACTATCATATATACAGTCTCATACTCAATGGCACTATATGCTCTTGCGGTGTTCTATGCGGCATGCAGAGATCTGCTTCGGCCATATAATCCTGTCCCAAAATTCATCATGATCAAATCAGTAGTGTTTCTCACATATTGGCAGGGTGTCCTGGTTTTCCTTGCTGCAAAATCTCGGTTTATCAAAAATGCTGAAAAAGCTGCTGATCTCCAGAACTTCGTATTGTGTGTTGAAATGCTCATAGCAGCTATTGGCCACCTATTTGCATTTCCTTACAACGAGTATGCTGGTCCCAATGGTCGACCTTCTGGTGATTTCAAGGGAAGCCTTCTGCATGCTCTGAAGTTCAATGATTTCTACCATGATACTGTTCATCAGTTTGCACCTACCTATAACGAATATGTGCTGTACAATCACAATGAGGGAGACAGCACTCAAAGGAAGTATCCTTCAGTGAGTACCGTGCCATCCGGGCGGGATGTAGAATTGTCTGGCATCTCTGTGATGCCTGCGAACA-GTGCGGTGACATCAAGCGTATCGTCAAACCAGGCAGATCAGGAAGAAACA-ATGAGCACCCCA-ATCAAGGACAGAGTTGATAATGTAGGGC-TTTACGACCTG-ACAG-ACTTGC--TTGATGTGGATTTGTCTAACTACCCAGCCAAGGTTCCTGCAATCTCTGATGTAAGAAAACAATGACA-TTGTGATGGCCTTTGGCGGGTGGCAATCGGGGAAATCGTGTTTTCCG-TTTGATCATAGATAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGCTATTCATGTCAGCACCTGTCTTACGGCCTCTCTGACTCGCTCTTTTCGCTAACTGTAAAATGTTGTGAGCTTAAAGTGAATTGAAAGTGAGTAATACCATATCTGCATTTACTGATGGCAAAAAAAAAA]
[+] EMBL AK066888 [CCTCCTCCTCCTCCTTCCCCAACCACTCGCAACCAAAGGCGCACCAAACCGGAGCCAATCCGAGCGCTCCGGCGGCGGAGGCGGCGGCGGCCGGACCTACTCGCTGCCGTGGGTGGGGGCTGGGAGGGAGCGGGCTGGTGGCTCGTCCCGTCCGCGATGGACTGGGCGGCGGCGGGGTACACGGCGGCGGCGCTGGTGTGCGCCGCGGCGGCCACCGTCATCGCGCTCGTGCACATCTACCGCCACCTCCTCCACTACGCGGAGCCCATCTACCAGCGATTCATCGTCCGCCTCATCTTCATGGTCCCGGTCTATGCCGTGATGTCGTTCCTTTCCCTTATCTTACCAGATAATTCAATATATTTTAATTCTATTCGAGAGATTTATGATGCTTGGGTCATCTACAATTTCTTTTCACTTTGCTTGGCATGGGTTGGAGGTCCTGGTGCTGTGGTGGTAAGTTTGAATGGGCGAACCCTGAAGCCATCGTGGTTTCTGATGACTTGCTGTTTTCCAGCTATTCCTCTAGATGGGCGTTTTATTCGGAGATGCAAACAAGGCTGTTTGCAGTTTGTGATTCTTAAGCCTATTTTGGTGGTTATTACCTTCATACTTTATGCGAAAGGAAAATACGCAGATGGAAACTTTAGTGTCAAGCAATCCTATCTATACATTACTATCATATATACAGTCTCATACTCAATGGCACTATATGCTCTTGCGGTGTTCTATGCGGCATGCAGAGATCTGCTTCGGCCATATAATCCTGTCCCAAAATTCATCATGATCAAATCAGTAGTGTTTCTCACATATTGGCAGGGTGTCCTGGTTTTCCTTGCTGCAAAATCTCGGTTTATCAAAAATGCTGAAAAAGCTGCTGATCTCCAGAACTTCGTATTGTGTGTTGAAATGCTCATAGCAGCTATTGGCCACCTATTTGCATTTCCTTACAACGAGTATGCTGGTCCCAATGGTCGACCTTCTGGTGATTTCAAGGGAAGCCTTCTGCATGCTCTGAAGTTCAATGATTTCTACCATGATACTGTTCATCAGTTTGCACCTACCTATAACGAATATGTGCTGTACAATCACAATGAGGGAGACAGCACTCAAAGGAAGTATCCTTCAGTGAGTACCGTGCCATCCGGGCGGGATGTAGAATTGTCTGGCATCTCTGTGATGCCTGCGAACA GTGCGGTGACATCAAGCGTATCGTCAAACCAGGCAGATCAGGAAGAAACA ATGAGCACCCCA ATCAAGGACAGAGTTGATAATGTAGGGC TTTACGACCTG ACAG ACTTGC TTGATGTGGATTTGTCTAACTACCCAGCCAAGGTTCCTGCAATCTCTGATGTAAGAAAACAATGACA TTGTGATGGCCTTTGGCGGGTGGCAATCGGGGAAATCGAGTTTTCCG TTTGATCATAGATAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGCTATTCATGTCAGCACCTGTCTTACGGCCTCTCTGACTCGCTCTTTTCGCTAACTGTAAAATGTTGTGAGCTTAAAGTGAATTGAAAGTGAGTAATACCATATCTGCATT ]
[+] EMBL AK104819 [ CTCCTCCTCCTCCTTCCCCAACCACTCGCAACCAAAGGCGCACCAAACCGGAGCCAATCCGAGCGCTCCGGCGGCGGAGGCGGCGGCGGCCGGACCTACTCGCTGCCGTGGGTGGGGGCTGGGAGGGAGCGGGCTGGTGGCTCGTCCCGTCCGCGATGGACTGGGCGGCGGCGGGGTACACGGCGGCGGCGCTGGTGTGCGCCGCGGCGGCCACCGTCATCGCGCTCGTGCACATCTACCGCCACCTCCTCCACTACGCGGAGCCCATCTACCAGCGATTCATCGTCCGCCTCATCTTCATGGTCCCGGTCTATGCCGTGATGTCGTTCCTTTCCCTTATCTTACCAGATAATTCAATATATTTTAATTCTATTCGAGAGATTTATGATGCTTGGGTCATCTACAATTTCTTTTCACTTTGCTTGGCATGGGTTGGAGGTCCTGGTGCTGTGGTGGTAAGTTTGAATGGGCGAACCCTGAAGCCATCGTGGTTTCTGATGACTTGCTGTTTTCCAGCTATTCCTCTAGATGGGCGTTTTATTCGGAGATGCAAACAAGGCTGTTTGCAGTTTGTGATTCTTAAGCCTATTTTGGTGGTTATTACCTTCATACTTTATGCGAAAGGAAAATACGCAGATGGAAACTTTAGTGTCAAGCAATCCTATCTATACATTACTATCATATATACAGTCTCATACTCAATGGCACTATATGCTCTTGCGGTGTTCTATGCGGCATGCAGAGATCTGCTTCGGCCATATAATCCTGTCCCAAAATTCATCATGATCAAATCAGTAGTGTTTCTCACATATTGGCAGGGTGTCCTGGTTTTCCTTGCTGCAAAATCTCGGTTTATCAAAAATGCTGAAAAAGCTGCTGATCTCCAGAACTTCGTATTGTGTGTTGAAATGCTCATAGCAGCTATTGGCCACCTATTTGCATTTCCTTACAACGAGTATGCTGGTCCCAATGGTCGACCTTCTGGTGATTTCAAGGGAAGCCTTCTGCATGCTCTGAAGTTCAATGATTTCTACCATGATACTGTTCATCAGTTTGCACCTACCTATAACGAATATGTGCTGTACAATCACAATGAGGGAGACAGCACTCAAAGGAAGTATCCTTCAGTGAGTACCGTGCCATCCGGGCGGGATGTAGAATTGTCTGGCATCTCTGTGATGCCTGCGAACA GTGCGGTGACATCAAGCGTATCGTCAAACCAGGCAGATCAGGAAGAAACA ATGAGCACCCCA ATCAAGGACAGAGTTGATAATGTAGGGC TTTACGACCTG ACAG ACTTGC TTGATGTGGATTTGTCTAACTACCCAGCCAAGGTTCCTGCAATCTCTGATGTAAGAAAACAATGACA TTGTGATGGCCTTTGGCGGGTGGCAATCGGGGAAATCGTGTTTTCCG TTTGATCATAGATAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGCTATTCATGTCAGCACCTGTCTTACGGCCTCTCTGACTCGCTCTTTTCGCTAACTGTAAAATGTTGTGAGCTTAAAGTGAATT ]
[+] EMBL OSS2341A [ TCGCAACCAAAGGCGCACCAAACCGGAGCCAATCCGAGCGCTCCGGCGGCGGAGGCGGCGGCGGCCGGACCTACTCGCTGCCGTGGGTGGGGGCTGGGAGGGAGCGGGCTGGTGGCTCGTCCCGTCCGCNATGGACTGGGCGGCGGCGGGGTACACGGCGGCGGCGCTGGTGTGCGCCG GGCGGCCACCGTCATCGCGCTCGTGCACATCTACCGCCACCTNCTCCACTACGCGGAGCCCATCTACCAGCGATTCATCGTCCGCCTCATCTTCATGGTCCCGGTCTATGCCGTGATGTCGTTCCTTTC ]
[+] EMBL CB666870 [ AAAGGCGCACCAAACCGGAGCCAATCCGAGCGCTCCGGCGGCGGAGGCGGCGGCGGCCGGACCTACTCGCTGCCGTGGGTGGGGGCTGGGAGGGAGCGGGCTGGTGGCTCGTCCCGTCCGCGATGGACTGGGCGGCGGCGGGGTACACGGCGGCGGCGCTGGTGTGCGCCGCGGCGGCCACCGTCATCGCGCTCGTGCACATCTACCGCCACCTCCTCCACTACGCGGAGCCCATCTACCAGCGATTCATCGTCCGCCTCATCTTCATGGTCCCGGTCTATGCCGTGATGTCGTTCCTTTCCCTTATCTTACCAGATAATTCAATATATTTTAATTCTATTCGAGAGATTTATGATGCTTGGGTCATCTACAATTTCTTTTCACTTTGCTTGGCATGGGTTGGAGGTCCTGGTGCTGTGGTGGTAAGTTTGAATGGGCGAACCCTGAAGCCATCGTGGTTTCTGATGACTTGCTGTTTTCCAGCTATTCCTCTAGATGGGCGTTTTATTCGGAGATGCAAACAAGGCTGTTTGCAGTTTGTGATTCTTAAGCCTATTTTGGTGGTTATTACCTTCATACTTTATGCGAAAGGAAAATACGCAGATGGAAACTTTAGTGTCAAGCAATCCTATCTATACATTACTATCATATATACAGTCTCATACTCAATGGCACTATATGCTCTTGCGGTGTTCTATGCGGCATGCAGAGATCTGCTTCGGCCATATAATCCTGTCCCAAAATTCATCATGATCAAATCAGTAGTGTTTCTCACATATTGGCAGGGTGTCCTGGTTTTCCTTGCTGCAAAATCTCGGTTT ]
[+] EMBL CB644357 [ AAAGGCGCACCAAACCGGAGCCAATCCGAGCGCTCCGGCGGCGGAGGCGGCGGCGGCCGGACCTACTCGCTGCCGTGGGTGGGGGCTGGGAGGGAGCGGGCTGGTGGCTCGTCCCGTCCGCGATGGACTGGGCGGCGGCGGGGTACACGGCGGCGGCGCTGGTGTGCGCCGCGGCGGCCACCGTCATCGCGCTCGTGCACATCTACCGCCACCTCCTCCACTACGCGGAGCCCATCTACCAGCGATTCATCGTCCGCCTCATCTTCATGGTCCCGGTCTATGCCGTGATGTCGTTCCTTTCCCTTATCTTACCAGATAATTCAATATATTTTAATTCTATTCGAGAGATTTATGATGCTTGGGTCATCTACAATTTCTTTTCACTTTGCTTGGCATGGGTTGGAGGTCCTGGTGCTGTGGTGGTAAGTTTGAATGGGCGAACCCTGAAGCCATCGTGGTTTCTGATGACTTGCTGTTTTCCAGCTATTCCTCTAGATGGGCGTTTTATTCGGAGATGCAAACAAGGCTGTTTGCAGTTTGTGATTCTTAAGCCTATTTTGGTGGTTATTACCTTCATACTTTATGCGAAAGGAAAATACGCAGATGGAAACTTTAGTGTCAAGCAATCCTATCTATACATTACTATCATATATACAGTCTCATACTCAATGGCACTATATGCTCTTGCGGTGTTCTATGCGGCATGCAGAGATCTGCTTCGGCCATATAATCCTGTCCCAAAATTCATCATGATCAAATCAGTAGTGTTTCTCACATATTGGCAGGGTGTCCTGGTTTTCCTTGC ]
[+] EMBL CF310807 [ GTCTATGCCGTGATGTCGTTCCTTTCCCTTATCTTACCAGATAATTCAATATATTTTAATTCTATTCGAGAGATTTATGATGCTTGGGTCATCTACAATTTCTTTTCACTTTGCTTGGCATGGGTTGGAGGTCCTGGTGCTGTGGTGGTAAGTTTGAATGGGCGAACCCTGAAGCCATCGTGGTTTCTGATGACTTGCTGTTTTCCAGCTATTCCTCTAGATGGGCGTTTTATTCGGAGATGCAAACAAGGCTGTTTGCAGTTTGTGATTCTTAAGCCTATTTTGGTGGTTATTACCTTCATACTTTATGCGAAAGGAAAATACGCAGATGGAAACTTTAGTGTCAAGCAATCCTATCTATACATTACTATCATATATACAGTCTCATACTCAATGGCACTATATGCTCTTGCGGTGTTCTATGCGGCATGCAGAGATCTGCTTCGGCCATATAATCCTGTCCCAAAATTCATCATGATCAAATCAGTAGTGTTTCTCACATATTGGCAGGGTGTCCTGGTTTTCCTTGCTGCAAAATCTCGGTTTATCAAAAATGCTGAAAAAGCTGCTGATCTC ]
[+] EMBL CF316553 [ ATAATTCAATATATTTTAATTCTATTCGAGAGATTTATGATGCTTGGGTCATCTACAATTTCTTTTCACTTTGCTTGGCATGGGTTGGAGGTCCTGGTGCTGTGGTGGTAAGTTTGAATGGGCGAACCCTGAAGCCATCGTGGTTTCTGATGACTTGCTGTTTTCCAGCTATTCCTCTAGATGGGCGTTTTATTCGGAGATGCAAACAAGGCTGTTTGCAGTTTGTGATTCTTAAACCTATTTTGGTGGTTATTACCTTCATACTTTATGCGAAAGGAAAATACGCAGATGGAAACTTTAGTGTCAAGCAATCCTATCTATACATTACTATCATATATACAGTCTCATACTCAATGGCACTATATGCTCTTGCGGTGTTCTATGCGGCATGCAGAGATCTGCTTCGGCCATATAATCCTGTCCCAAAATTCATCATGATCAAATCAGTAGTGTTTCTCACATATTGGCAGGGTGTCCTGGTTTTCCTTGCTGCAAAATCTCGGTTTATCAAAAATGCTGAAAAAG ]
[-] EMBL CB666871 [ CCTGTCCCAAAATTCATCATGATCAAATCAGTAGTGTTTCTCACATATTGGCAGGGTGTCCTGGTTTTCCTTGCTGCAAAATCTCGGTTTATCAAAAATGCTGAAAAAGCTGCTGATCTCCAGAACTTCGTATTGTGTGTTGAAATGCTCATAGCAGCTATTGGCCACCTATTTGCATTTCCTTACAACGAGTATGCTGGTCCCAATGGTCGACCTTCTGGTGATTTCAAGGGAAGCCTTCTGCATGCTCTGAAGTTCAATGATTTCTACCATGATACTGTTCATCAGTTTGCACCTACCTATAACGAATATGTGCTGTACAATCACAATGAGGGAGACAGCACTCAAAGGAAGTATCCTTCAGTGAGTACCGTGCCATCCGGGCGGGATGTAGAATTGTCTGGCATCTCTGTGATGCCTGCGAACA GTGCGGTGACATCAAGCGTATCGTCAAACCAGGCAGATCAGGAAGAAACA ATGAGCACCCCA ATCAAGGACAGAGTTGATAATGTAGGGC TTTACGACCTG ACAG ACTTGC TTGATGTGGATTTGTCTAACTACCCAGCCAAGGTTCCTGCAATCTCTGATGTAAGAAAACAATGACA TTGTGATGGCCTTTGGCGGGTGGCAATCGGGGAAATCGTGTTTTCCG TTTGATCATAGATAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGCTATTCATGTCAGCACCTGTCTTACGGCCTCTCTGACTCGCTCTTTTCGCTAACTGTAAAATGTTGTGAGCTTAAAGTGAATTGAAAGTGAGTAATAC ]
[-] EMBL CB644358 [ CATCATGATCAAATCAGTAGTGTTTCTCACATATTGGCAGGGTGTCCTGGTTTTCCTTGCTGCAAAATCTCGGTTTATCAAAAATGCTGAAAAAGCTGCTGATCTCCAGAACTTCGTATTGTGTGTTGAAATGCTCATAGCAGCTATTGGCCACCTATTTGCATTTCCTTACAACGAGTATGCTGGTCCCAATGGTCGACCTTCTGGTGATTTCAAGGGAAGCCTTCTGCATGCTCTGAAGTTCAATGATTTCTACCATGATACTGTTCATCAGTTTGCACCTACCTATAACGAATATGTGCTGTACAATCACAATGAGGGAGACAGCACTCAAAGGAAGTATCCTTCAGTGAGTACCGTGCCATCCGGGCGGGATGTAGAATTGTCTGGCATCTCTGTGATGCCTGCGAACA GTGCGGTGACATCAAGCGTATCGTCAAACCAGGCAGATCAGGAAGAAACA ATGAGCACCCCA ATCAAGGACAGAGTTGATAATGTAGGGC TTTACGACCTG ACAG ACTTGC TTGATGTGGATTTGTCTAACTACCCAGCCAAGGTTCCTGCAATCTCTGATGTAAGAAAACAATGACA TTGTGATGGCCTTTGGCGGGTGGCAATCGGGGAAATCGTGTTTTCCG TTTGATCATAGATAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGCTATTCATGTCAGCACCTGTCTTACGGCCTCTCTGACTCGCTCTTTTCGCTAACTGTAAAATGTTGTGAGCTTAAAGTGAATTGAAAGTGAGTAATACCAaaaaaaaaa ]
[-] EMBL CF310808 [ GCTGTACAATCACAATGAGGGAGACAGCACTCAAAGGAAGTATCCTTCAGTGAGTACCGTGCCATCCGGGCGGGATGTAGAATTGTCTGGCATCTCTGTGATGCCTGCGAACA GTGCGGTGACATCAAGCGTATCGTCAAACCAGGCAGATCAGGAAGAAACA ATGAGCACCCCA ATCAAGGACAGAGTTGATAATGTAGGGC TTTACGACCTG ACAG ACTTGC TTGATGTGGATTTGTCTAACTACCCAGCCAAGGTTCCTGCAATCTCTGATGTAAGAAAACAATGACA TTGTGATGGCCTTTGGCGGGTGGCAATCGGGGAAATCGTGTTTTCCG TTTGATCATAGATAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGCTATTCATGTCAGCACCTGTCTTACGGCCTTTCTGACTCGCTCTTTTCGCTAACTGTAAAATGTTGTGAGCTTAAAGTGAATTGAAAGTGAGTAATACCATATCTGCATTTACTGATGGCAAAAAAAAAA]
[+] EMBL BI809932 [ ACAATGAGGGAGACAGCACTCAAAGGAAGTATCCTTCAGCGAGTACCGTGCCATCC GGCGGGATGTAGAATTGTCTGGCATCTCTGTGATGCCTGCGAACA GTGCGGTGACATCAAGCGTATCGTCAAACCA GCAGATCAGGAAGAAACACATGAGCACCCCACATCAAGGACAGAGTTGATAATGTAGGGC TTTACGACCTG ACAG ACTTGC TTGATGTGGATTTGTCTAACTACCCAGCCAAGGTTCCTGCAATCTCTGATGTAAGAAAACCATGACACTTGTGATGGCCTTTGGCGGGTGGC ATCGGGGAAATCGTGTTTTCCG TTTGATCATAGATAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGCTATTCATGTCAGCACCTGTCTTACGGCCTCTCTGACTCGCTCTTTTCGCTAACTGTAAAATGTTGTGAGCTTAAAGTGAATTGAAAGTGAGTAATACCATATCTGCATTTACTGATGGCCAAAAAAA ]
[+] EMBL BM038634 [ GAAGTATCCTTCAGCGAGTACCGT CCATCC GGCGGGATGTAGAATTGTCT GCATCTCTGTGATGCCTGCGAACANGTGCGGTGACATCAAGCGTATCGTCAAACCA GCAGATCAGGAAGAAAC ATGAGCACCCC ATCAAGGACAGAGTTGATAATGTAGGGC TTTACGACCTG ACAG ACTTGC TTGATGTGGATTTGTCTAACTACCCAGCCAAGGTTCCTGCAATCTCTGATGTAAGAAAAC ATGAC TTGTGATGGCCTTTGGCGGGTGGC ATCGGGGAAATCGTGTTTTCCGCTTTGATCATAGATAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGCTATTCATGTCAGCACCTGTCTTACGGCCTCTCTGACTCGCTCTTTTCGCTAACTGTAAAATGTTGTGAGCTTAAAGTGAATTGAAAGTGAGTAATACCATATCTGCATTTACTGATGGCAAAAAAA ]
[+] EMBL AU086031 [ GGGCNTTTACGACCTGNACAGAACTTGCCTTTGATGTGGATTTGTCTAACTACCCAGCCAAGGTTCCTGCAATCTCTGATGTAAGAAAACAATGACA TTGTGAT GCCTTTGGCGGGTGGCAATCGGGGAAATCGTGTTTTCCG TTTGATCATAGATAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGCTATTCATGTCAGCACCTGTCTTACGGCCTCTCTGACTCGCTCTTTTCGCTAACTGTAAAATGTTGTGAGCTTAAAGTGAATTGAAAGTGAGTAATACCAaaaaa ]
consensusID : consensus_14532#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence
[GGGAGCCAGCCCTCAAAGGAAGTATCCTTCAGTGAGTCCCGTCCCATCCGGGGGGGATGTAAAATTGTTTGGCATTTTTGTAAGGCCTGCGAACAGTGGGGTGACATCAAGGGTTTGGTCAACCCGGGCAGTTCAGGAAAAACCAATGGGCCCCCCAATCAAGGACAAAGTTGATAATGTAGGGTTTTACGCCCTGACAAACTTGCTTAATGTGGATTTGTTTAACTACCCAGCCAAGGTTCCTGCAATTTTTGATGTAAAAAACCAATGCCTTTGTGATGGCCTTTGGGGGGTGGCAATCGGGGAAATGGTGTTTTCCGTTTGATCAAAAAAAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGTTTTTCTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCA]
[-] EMBL CF316552 [GGGAGCCAGCCCTCAAAGGAAGTATCCTTCAGTGAGTCCCGTCCCATCCGGGGGGGATGTAAAATTGTTTGGCATTTTTGTAAGGCCTGCGAACAGTGGGGTGACATCAAGGGTTTGGTCAACCCGGGCAGTTCAGGAAAAACCAATGGGCCCCCCAATCAAGGACAAAGTTGATAATGTAGGGTTTTACGCCCTGACAAACTTGCTTAATGTGGATTTGTTTAACTACCCAGCCAAGGTTCCTGCAATTTTTGATGTAAAAAACCAATGCCTTTGTGATGGCCTTTGGGGGGTGGCAATCGGGGAAATGGTGTTTTCCGTTTGATCAAAAAAAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGTTTTTCTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14532#1 CCTCCTCCTCCTCCTTCCCCAACCACTCGCAACCAAAGGCGCACCAAACCGGAGCCAATC 60
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 ---------CCCGGCCGACGCCGCGTCTACCCCATCCCCCCCCCCCCCCGCCCCCTCCTC 51
consensus_14532#1 CGAGCGCTCCGGCGGCGGAGGCGGCGGCGGCCGGACCTACTCGCTGCCGTGGGTGGGGGC 120
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 GTCGGCGCCACCGCCGCCGCAGGCTCGCCGCCTAGGGTTCCTTCCACTCTCGGCGCAAGG 111
consensus_14532#1 TGGGAGGGAGCGGGCTGGTGGCTCGTCCCGTCCGCGATGGACTGGGCGGCGGCGGGGTAC 180
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 GGCGTAGGGAGGTTGAGAGGGAGCGAGCGAGCGATGGAGGGGTGGGTGGCGACGGTCGCG 171
consensus_14532#1 ACGGCGGCGGCGCTGGTGTGCGCCGCGGCGGCCACCGTCATCGCGCTCGTGCACATCTAC 240
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 TACACGGGCACGGCGCTGGCGTGCGCCGCGGCGGCGACGGTGGTGGCGCTGCGCCTCGTC 231
consensus_14532#1 CGCCACCTCCTCCACTACGCGGAGCCCATCTACCAGCGATTCATCGTCCGCCTCATCTTC 300
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 TACCGCCACCTCCTCCACTACGCCGAGCCCACCCACCAGCGCTTCATCGTCCGCATCATC 291
consensus_14532#1 ATGGTCCCGGTCTATGCCGTGATGTCGTTCCTTTCCCTTATCTTACCAGATAATTCAATA 360
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 CTCATGGTCCCGGTATATGCTGTGATGTCATTTCTTTCCCTTGTACTACCTGGTAGCGCC 351
consensus_14532#1 TATTTTAATTCTATTCGAGAGATTTATGATGCTTGGGTCATCTACAATTTCTTTTCACTT 420
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 ATCTACTTCAACTCTATTCGCGAAATCTATGACGCATGGGTCATCTACAATTTCTTTTCA 411
consensus_14532#1 TGCTTGGCATGGGTTGGAGGTCCTGGTGCTGTGGTGGTAAGTTTGAATGGGCGAACCCTG 480
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 CTCTGCTTGGCATGGGTAGGAGGTCCTGGTGCCGTGGTAGTAAGTTTGACTGGCCGATCT 471
consensus_14532#1 AAGCCATCGTGGTTTCTGATGACTTGCTGTTTTCCAGCTATTCCTCTAGATGGGCGTTTT 540
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 CTGAAACCGTCGTGGTTCATGATGACTTGCTGTTTTTCAGCTGTTCCTCTAGATGGGCGT 531
consensus_14532#1 ATTCGGAGATGCAAACAAGGCTGTTTGCAGTTTGTGATTCTTAAGCCTATTTTGGTGGTT 600
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 TTTATACGGAGATGCAAACAGGGTTGTCTGCAGTTTGTGATCCTCAAGCCAATATTGGTT 591
consensus_14532#1 ATTACCTTCATACTTTATGCGAAAGGAAAATACGCAGATGGAAACTTTAGTGTCAAGCAA 660
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 GTTATAACCTTCATTCTTTATGCCAAAGGAAAATATGAAGATGGAAATTTTAGTGTCAAT 651
consensus_14532#1 TCCTATCTATACATTACTATCATATATACAGTCTCATACTCAATGGCACTATATGCTCTT 720
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 CAATCCTATCTATACATAACTATCATCTACACAATTTCGTATTCGATGGCACTGTTTGCT 711
consensus_14532#1 GCGGTGTTCTATGCGGCATGCAGAGATCTGCTTCGGCCATATAATCCTGTCCCAAAATTC 780
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 CTAGCACTGTTCTACGTAGCATGCAGAGATCTTCTTCAGCCATATAATCCTGTTCCAAAA 771
consensus_14532#1 ATCATGATCAAATCAGTAGTGTTTCTCACATATTGGCAGGGTGTCCTGGTTTTCCTTGCT 840
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 TTTATCATTATCAAATCAGTGGTGTTCCTCACCTACTGGCAGGGCGTCCTGGTTTTCCTT 831
consensus_14532#1 GCAAAATCTCGGTTTATCAAAAATGCTGAAAAAGCTGCTGATCTCCAGAACTTCGTATTG 900
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 GCTGCGAAATCTAGATTCATAAAAAATGCTGAAGAAGCTGCTTATCTCCAAAATTTTGTG 891
consensus_14532#1 TGTGTTGAAATGCTCATAGCAGCTATTGGCCACCTATTTGCATTTCCTTACAACGAGTAT 960
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 CTTTGTGTTGAGATGCTCATAGCAGCTATTGGGCACCAATTTGCCTTCTCGTACAAGGAG 951
consensus_14532#1 GCTGGTCCCAATGGTCGACCTTCTGGTGATTTCAAGGGAAGCCTTCTGCATGCTCTGAAG 1020
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 TATGCTGGTTCCAATGCCCGTCCTTTCGGTGGATTCAGGGGAAGCCTTTTTCATGCTCTG 1011
consensus_14532#1 TTCAATGATTTCTACCATGATACTGTTCATCAGTTTGCACCTACCTATAACGAATATGTG 1080
consensus_14532#2 ------------------------------------------------------------
consensus_14532#0 AAATTCAATGACTTCTATCATGATACTGTGCACCAGTTTGCACCAACATATCATGAATAT 1071
consensus_14532#1 CTGTACAATCACAATGAGGGAGACAGCACTCAAAGGAAGTATCCTTCAGTGAGTACCGTG 1140
consensus_14532#2 -----------------GGGAGCCAGCCCTCAAAGGAAGTATCCTTCAGTGAGTCCCGTC 43
consensus_14532#0 GTGCTCTACAGTAACGAGGAAGAGGATGAACCGACAAAATATAGCTCTGCCAGTGTTGTG 1131
** ** * * ** *** ** * *** **
consensus_14532#1 CCATCCGGGCGGGATGTAGAATTGTCTGGCATCTCTGTGATGCCTGCGAACAGTGCGGTG 1200
consensus_14532#2 CCATCCGGGGGGGATGTAAAATTGTTTGGCATTTTTGTAAGGCCTGCGAACAGTGGGGTG 103
consensus_14532#0 TCAACAGTACAGGACATACAGCTGGTAGAAGTCTCTGTCGTGGACTCGAAAGCTCCGTTG 1191
** * * *** ** * ** * * * *** * **** * * **
consensus_14532#1 ACATCAAGCGTATCGTCAAACCAGGCAGATCAGGAAGAAACAATGAGCACCCCAATCAAG 1260
consensus_14532#2 ACATCAAGGGTTTGGTCAACCCGGGCAGTTCAGGAAAAACCAATGGGCCCCCCAATCAAG 163
consensus_14532#0 GCATCAGTCATCCTAACACATGAGGCAGAT------AAAACAATGCCCTCCCATGGCATG 1245
***** * ** ***** * ** ***** * *** ** *
consensus_14532#1 GACAGAGTTGATAA---TGTAGGGCTTTACGACCTGACAGACTTGCTTGATGTGGATTTG 1317
consensus_14532#2 GACAAAGTTGATAA---TGTAGGGTTTTACGCCCTGACAAACTTGCTTAATGTGGATTTG 220
consensus_14532#0 GAAGAAACTGTTGCCCCTTCAGAGCCATACGACCTCTCAAACTTGGTTGATGTAGAACTG 1305
** * ** * * ** * **** *** ** ***** ** **** ** **
consensus_14532#1 TCTAACTACCCAGCCAAGGTTCCTGCAATCTCTGATGTAAGAAAACAATGACATTGTGAT 1377
consensus_14532#2 TTTAACTACCCAGCCAAGGTTCCTGCAATTTTTGATGTAAAAAACCAATGCCTTTGTGAT 280
consensus_14532#0 TCCAATTACTCTGCTGAGGTCCCTGCAATTCCTGATGTGGGGAAACAATGATATTGTG-T 1364
* ** *** * ** **** ******** ****** ** ***** ***** *
consensus_14532#1 GGCCTTTGGCGGGTGGCAATCGGGGAAATCGTGTTTTCCGTTTGATCATAGATAACGCTG 1437
consensus_14532#2 GGCCTTTGGGGGGTGGCAATCGGGGAAATGGTGTTTTCCGTTTGATCAAAAAAAACGCTG 340
consensus_14532#0 GATATATATCCGTCAG-ATGTAAATGGGTAGCGCTCACGAGTTGTTCATAGATTACACTG 1423
* * * * * * * * * * * *** *** * * ** ***
consensus_14532#1 TAAAAATGTGTGTATTACTTCCCATTGAAGGGAGCTATTC----ATGTCAGCACCTGTCT 1493
consensus_14532#2 TAAAAATGTGTGTATTACTTCCCATTGAAGGGAGTTTTTC----TTGTCAAAAAAAAAAA 396
consensus_14532#0 TAAAGGTATCCTTGTAATCCTTTGTTTCTGCCAATTTTTCCCCGTTGCTAGGGACGTGCT 1483
**** * * * * * ** * * * *** ** *
consensus_14532#1 TACGGCCTCTCTGACTCGCTCTTTTCGCTAACTGTAAAATGTT-------GTGAGCTTAA 1546
consensus_14532#2 AAAA-------------------------AAAAAAAAAAAAAA-------AAAAAAAAAA 424
consensus_14532#0 GATATCTTTGGTTCAAATTGAGCTAAACTGACAGATTAGCTGATGGTGTCAAGTAAATTT 1543
* * *
consensus_14532#1 AGTGAATTGAAAGTGAGTAATACCATATCTGCATTTACTGATGGCAAAAAAAAAA----- 1601
consensus_14532#2 AAAAAAAAAAAAAAAAACACTGTCA----------------------------------- 449
consensus_14532#0 GTAATGTAGGGAGAAGAGAATGTAACATGTTTCCCATTTTGTGTTNCTGATAAACCATGT 1603
* * * *
consensus_14532#1 ------
consensus_14532#2 ------
consensus_14532#0 CTGCAA 1609
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||