These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1625 fasta sequence [TTCCCCTTCTCCGCATCTCGCCTTTTTCCTCCTCCGGGCTGCGGCAATGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGA-TTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAACTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGGAGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCA-GAAGGAG-ACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGGTTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACA-TGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCA-GGCATTGTTTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTT-GTAGTATTTTTGCTGTATCTCCGACTTGTGTGCATGT-ATGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAA----AAAAAAAA] [+] EMBL AK073957 [TTCCCCTTCTCCGCATCTCGCCTTTTTCCTCCTCCGGGCTGCGGCAATGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGA TTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAACTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGGAGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCA GAAGGAG ACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGATTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACA TGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCA GGCATTGTTTACTC GAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTT GTAGTATTTTTGCTGTATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAA ] [+] EMBL CB682962 [ CTCCTCCGGGCTGCGGCAATGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGA TTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAAC ] [+] EMBL CB663177 [ CCTCCGGGCTGCGGCAATGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGA TTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTANGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAng ] [+] EMBL CA754865 [ TGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCANAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCANATGCTATGTACTTGCTCCTGATCCTACNACCCGCTCCTTGAAAATTATGC AGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACNAGAGATTTATTTC ] [+] EMBL CA754815 [ TGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAG ] [-] EMBL CB632476 [ GGACATCTATGATCCAGTCACAAACTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGGAGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCA GAAGGAG ACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGGTTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACA TGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCA GGCATTGTTTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTAGGA TATTTTTGCTGTATCTCCGACTTGTGTGCATGT ATGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCGCCCCTATACATATTGAGATA ] [+] EMBL BQ909143 [ cagGTCGTCATGGACGGAACGCTCTACATGCTGGAGCA TCGCTCGGCACAAAGCTGATGATGTGCCA GAAGGAG ACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGGTTCTTGGTGTCCTCTTCCACGGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACA TGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCA GGCATTGTTTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTT GTAGTATTTTTGCTGTATCTCCGACTTGTGTGCATGT ATGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAA AAAAAAAA] [+] EMBL BQ905903 [ TGGCATGAAGGAGTACGAAGGAGTGGATCATGCTTGGTA GCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGGTTCTTGGTGTCCTCTTCCACGGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACA TGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCA GGCATTGTTTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTT GTAGTATTTTTGCTGTATCTCCGACTTGTGTGCATGT ATGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAAAAAAa ] [+] EMBL BI804944 [ AGTGACCATTGACCTGGATACTGTCAGGGCAGATGGGTTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACACTGGGTTGATTGATGCACATATGAAATAAGGC ATCCTCCACGGC TTGTTTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTT GTAGTATTTTTGCTGTATCTCCGACTTGTGTGCATGT ATGTAAC AACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAATTCCAAAAAAAA] consensusID : consensus_14535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1575 fasta sequence [CTCGCGAAAAAACTAGGGTTTACCCTAGCGGCTCTGGCGGCGGCGAGGCCCCTCCCCTCTCCTCCGACTCCGGCTCTCCTCGGTCGTCCTCCCTCTCTTTTGCCGGTCGTGCCCCCTGCTCCACCGTCACTCTCCGTCGAGCTGAGCACAATGGATAGTTGTCCGTCGCCCATTGCAAGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGATTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAA-CTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGG--AGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGATTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGTTTACTCGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG-TATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAATTCACGAGTGTGATGCGTCCTGTGATTGTTATGTGTGATTGTTCA] [+] EMBL AK062579 [CTCGCGAAAAAACTAGGGTTTACCCTAGCGGCTCTGGCGGCGGCGAGGCCCCTCCCCTCTCCTCCGACTCCGGCTCTCCTCGGTCGTCCTCCCTCTCTTTTGCCGGTCGTGCCCCCTGCTCCACCGTCACTCTCCGTCGAGCTGAGCACAATGGATAGTTGTCCGTCGCCCATTGCAAGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGATTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAA CTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGG AGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGATTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGTTTACTCGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG TATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAATTCACGAGTGTGATGCGTCCTGTGATTGTTATGTGTGATTGTTCA] [+] EMBL AU095193 [ AAAAACNAGGGTTTACCCNAGCGGCTCTGGCGGCGGCGAGGCCCCNCCCCTCNCCNCCGACNCCGGCTCNCCTCGGTCGTCCNCCCTCTCTTTTGCCGGTCGTNCCCCCNGCTCCACCGTCACNNNCCGTCGAGCTGAGCACAATGGATAGTTGTCCGTCGCCCATNGCAAGGACAATTGATGACNTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTNCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACNGCTTTCCAGTGAAGAGTGGCACTNTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCAT ] [+] EMBL AA750147 [ cacgagCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAG GAAGAGNGGCAC C G NGCAAGAGGAACAAggagag ] [+] EMBL CF323908 [ TGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGATTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAACCTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATT GATGGGGNNAGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAAT ] [-] EMBL CB663178 [ TTGAGACCTTAGACAAGAGATTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAA CTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGG AGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGATTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGC ] [-] EMBL CB682963 [ CAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAA CTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGG AGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGATTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGTTTACTCGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG TATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGT ] [-] EMBL D42348 [ CCCGTTGCTAATTGGTG TTAATTGTTTGTAGT TTTTTGCTGTTATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAATTCACGAGTATGATGCGTCCTGTG ] consensusID : consensus_14535#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [CCNCNTNAGAATTGAAANTTTCCCCNTNTGTTTGNNTTTGNATCCAACCGTTCCTTCNNNGNNCCCGGNACCCGTTTNTACANTTCCGGNGCCCTNNCGNTNCGNCNNCCAAAGTCTTTNNTTNATTTTGNCCNGAANGGAAGNCCNNAAGGNATTTGGNATCCATGCCTTGGTTAGGCCTGTCTTGACAAGGNTTTCCAAGGCCCCCCTTTGTGGNGCCCCNTTNGGNAATTGGGNAGAAANNATTTTNCCATTATTTGGAAAGAGGGGCTNAGTATAAGTGGACANTTGGACCTGGGATANTGTCCAGGGGCNAGATGGATTCCTGGGTGTNCCCTCTTCCNACAGGCCCCATTGGTGGGAGCATGACTTCCCCACCTGNANAGATGCCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGTTTACTCGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTGTATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAAAAAAAAAA] [+] EMBL AU031010 [CCNCNTNAGAATTGAAANTTTCCCCNTNTGTTTGNNTTTGNATCCAACCGTTCCTTCNNNGNNCCCGGNACCCGTTTNTACANTTCCGGNGCCCTNNCGNTNCGNCNNCCAAAGTCTTTNNTTNATTTTGNCCNGAANGGAAGNCCNNAAGGNATTTGGNATCCATGCCTTGGTTAGGCCTGTCTTGACAAGGNTTTCCAAGGCCCCCCTTTGTGGNGCCCCNTTNGGNAATTGGGNAGAAANNATTTTNCCATTATTTGGAAAGAGGGGCTNAGTATAAGTGGACANTTGGACCTGGGATANTGTCCAGGGGCNAGATGGATTCCTGGGTGTNCCCTCTTCCNACAGGCCCCATTGGTGGGAGCATGACTTCCCCACCTGNANAGATGCCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGTTTACTCGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTGTATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14535#0 TTCCCCTTCTCCGCATCTCGCCTTTTTCCTCCTCCGGGCTGCGGCAATGGCCGAAACCCT 60 consensus_14535#1 ------------------------------------------------------------ consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 AGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTT--GTTGTT 118 consensus_14535#1 ---------------------------CTCGCGAAAAAACTAGGGTTTACCCTAGCGGCT 33 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 TCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAA 178 consensus_14535#1 CTGGCGGCGGCGAGGCCCCTCCCCTCTCCTCCGACTCCGGCTCTCCTCGGTCGTCC---- 89 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 TCCACCGCGTCCACCCCCGCCCGCCTCTGCTCC-TCGTCAGA-TCCGACGC-TTAAGCAC 235 consensus_14535#1 TCCCTCTCTTTTGCCGGTCGTGCCCCCTGCTCCACCGTCACTCTCCGTCGAGCTGAGCAC 149 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 CTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACG 295 consensus_14535#1 AATGGATAGTTGTCCGTCGCCCATTGCAAGGACAATTGATGACTTCTGAAATAAAGCACG 209 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 GTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATG 355 consensus_14535#1 GTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATG 269 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 GTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATG 415 consensus_14535#1 GTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATG 329 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 CTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTT 475 consensus_14535#1 CTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTT 389 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 GCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCA 535 consensus_14535#1 GCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCA 449 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 TCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCA 595 consensus_14535#1 TCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCA 509 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 TCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGATTAT 655 consensus_14535#1 TCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGATTAT 569 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 TTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATG 715 consensus_14535#1 TTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATG 629 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 CCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTT 775 consensus_14535#1 CCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTT 689 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 CTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGC 835 consensus_14535#1 CTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGC 749 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 CAAATTCATGGGACATCTATGATCCAGTCACAAACTCTTGGTGTGTGCACAAGAATCCAA 895 consensus_14535#1 CAAATTCATGGGACATCTATGATCCAGTCACAAACTCTTGGTGTGTGCACAAGAATCCAA 809 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 TGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGGAGTTGGTAACTGTTCACA 955 consensus_14535#1 TGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGGAGTTGGTAACTGTTCACA 869 consensus_14535#2 ------------------------------------------------------------ consensus_14535#0 AGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGA 1015 consensus_14535#1 AGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGA 929 consensus_14535#2 -------------------CCNCNTNAGAATTGAAANTTTCCCCNTNTGTTTGNNTTTGN 41 * * * * * * ** * ** ** * consensus_14535#0 GGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAA 1075 consensus_14535#1 GGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAA 989 consensus_14535#2 ATCCAACCGTTCCTTCNNNGNNCCCGGN---ACCCGTTTNTACANTT-CCGGNGCCCTNN 97 ** * * ** * * * *** * * * * consensus_14535#0 CGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGA 1135 consensus_14535#1 CGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGA 1049 consensus_14535#2 CGNTNCGNCNNCCAAAGTCTTTNNTTNATTTTGNCCNGAANGGAAGNCCNNAAGGNATTT 157 ** * * ** * * * ** * * * * * consensus_14535#0 AGGAGTGG-ATCATGCTTGGTAGGCTGTCT-GACAAG--CTTACAAGGCCTCC--TTGTG 1189 consensus_14535#1 AGGAGTGG-ATCATGCTTGGTAGGCTGTCT-GACAAG--CTTACAAGGCCTCC--TTGTG 1103 consensus_14535#2 GGNATCCATGCCTTGGTTAG--GCCTGTCTTGACAAGGNTTTCCAAGGCCCCCCTTTGTG 215 * * * ** ** * * ****** ****** ** ******* ** ***** consensus_14535#0 AG---CTCGTAGGCATT--GGGAGAAAGA---TTTACATTATTGGAAGAG---GGCTGAG 1238 consensus_14535#1 AG---CTCGTAGGCATT--GGGAGAAAGA---TTTACATTATTGGAAGAG---GGCTGAG 1152 consensus_14535#2 GNGCCCCNTTNGGNAATTGGGNAGAAANNATTTTNCCATTATTTGGAAAGAGGGGCTNAG 275 * * ** * * ** ***** ** ******* * * ** **** ** consensus_14535#0 TATAGT--GACAATTG-ACCTGG-ATACTGTCAGGG---CAGATGGGTTCTTGG---TGT 1288 consensus_14535#1 TATAGT--GACAATTG-ACCTGG-ATACTGTCAGGG---CAGATGGATTCTTGG---TGT 1202 consensus_14535#2 TATAAGTGGACANTTGGACCTGGGATANTGTCCAGGGGCNAGATGGATTCCTGGGTGTNC 335 **** **** *** ****** *** **** ** ****** *** *** * consensus_14535#0 CCTCTTCCA-CAGGCCC-ATTGGTGG-AGCATGACTTCCC-ACCTGA-GAGATGCC-GGG 1342 consensus_14535#1 CCTCTTCCA-CAGGCCC-ATTGGTGG-AGCATGACTTCCC-ACCTGA-GAGATGCC-GGG 1256 consensus_14535#2 CCTCTTCCNACAGGCCCCATTGGTGGGAGCATGACTTCCCCACCTGNANAGATGCCCGGG 395 ******** ******* ******** ************* ***** ******* *** consensus_14535#0 TTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCC-GGAGAAAATGTCACACAT 1401 consensus_14535#1 TTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCC-GGAGAAAATGTCACACAT 1315 consensus_14535#2 TTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCCGGAGAAAATGTCACACAT 455 ***************************************** ****************** consensus_14535#0 GTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGT 1461 consensus_14535#1 GTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGT 1375 consensus_14535#2 GTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGT 515 ************************************************************ consensus_14535#0 TTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG 1521 consensus_14535#1 TTACTCGAGAGA--GTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG 1433 consensus_14535#2 TTACTCGAGAGA--GTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG 573 ************ ********************************************** consensus_14535#0 TATCTCCGACTTGTGTGCATGTA-TGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTT 1580 consensus_14535#1 TATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTT 1493 consensus_14535#2 TATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTT 633 *************** * * * ************************************ consensus_14535#0 CACACCTATACATATTGAGATAATAACTTGTTCATAAAAAAAAAA--------------- 1625 consensus_14535#1 CACACCTATACATATTGAGATAATAACTTGTTCATAATTCACGAGTGTGATGCGTCCTGT 1553 consensus_14535#2 CACACCTATACATATTGAGATAATAACTTGTTCATAAAAAAAAAA--------------- 678 ************************************* * * consensus_14535#0 ---------------------- consensus_14535#1 GATTGTTATGTGTGATTGTTCA 1575 consensus_14535#2 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||