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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1625 fasta sequence
[TTCCCCTTCTCCGCATCTCGCCTTTTTCCTCCTCCGGGCTGCGGCAATGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGA-TTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAACTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGGAGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCA-GAAGGAG-ACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGGTTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACA-TGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCA-GGCATTGTTTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTT-GTAGTATTTTTGCTGTATCTCCGACTTGTGTGCATGT-ATGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAA----AAAAAAAA]
[+] EMBL AK073957 [TTCCCCTTCTCCGCATCTCGCCTTTTTCCTCCTCCGGGCTGCGGCAATGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGA TTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAACTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGGAGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCA GAAGGAG ACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGATTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACA TGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCA GGCATTGTTTACTC GAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTT GTAGTATTTTTGCTGTATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAA ]
[+] EMBL CB682962 [ CTCCTCCGGGCTGCGGCAATGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGA TTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAAC ]
[+] EMBL CB663177 [ CCTCCGGGCTGCGGCAATGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGA TTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTANGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAng ]
[+] EMBL CA754865 [ TGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCANAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCANATGCTATGTACTTGCTCCTGATCCTACNACCCGCTCCTTGAAAATTATGC AGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACNAGAGATTTATTTC ]
[+] EMBL CA754815 [ TGGCCGAAACCCTAGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTTGTTGTTTCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAATCCACCGCGTCCACCCCCGCCCGCCTCTGCTCCTCGTCAGATCCGACGCTTAAGCACCTTTCCGAG ]
[-] EMBL CB632476 [ GGACATCTATGATCCAGTCACAAACTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGGAGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCA GAAGGAG ACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGGTTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACA TGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCA GGCATTGTTTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTAGGA TATTTTTGCTGTATCTCCGACTTGTGTGCATGT ATGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCGCCCCTATACATATTGAGATA ]
[+] EMBL BQ909143 [ cagGTCGTCATGGACGGAACGCTCTACATGCTGGAGCA TCGCTCGGCACAAAGCTGATGATGTGCCA GAAGGAG ACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGGTTCTTGGTGTCCTCTTCCACGGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACA TGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCA GGCATTGTTTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTT GTAGTATTTTTGCTGTATCTCCGACTTGTGTGCATGT ATGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAA AAAAAAAA]
[+] EMBL BQ905903 [ TGGCATGAAGGAGTACGAAGGAGTGGATCATGCTTGGTA GCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGGTTCTTGGTGTCCTCTTCCACGGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACA TGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCA GGCATTGTTTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTT GTAGTATTTTTGCTGTATCTCCGACTTGTGTGCATGT ATGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAAAAAAa ]
[+] EMBL BI804944 [ AGTGACCATTGACCTGGATACTGTCAGGGCAGATGGGTTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACACTGGGTTGATTGATGCACATATGAAATAAGGC ATCCTCCACGGC TTGTTTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTT GTAGTATTTTTGCTGTATCTCCGACTTGTGTGCATGT ATGTAAC AACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAATTCCAAAAAAAA]
consensusID : consensus_14535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1575 fasta sequence
[CTCGCGAAAAAACTAGGGTTTACCCTAGCGGCTCTGGCGGCGGCGAGGCCCCTCCCCTCTCCTCCGACTCCGGCTCTCCTCGGTCGTCCTCCCTCTCTTTTGCCGGTCGTGCCCCCTGCTCCACCGTCACTCTCCGTCGAGCTGAGCACAATGGATAGTTGTCCGTCGCCCATTGCAAGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGATTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAA-CTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGG--AGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGATTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGTTTACTCGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG-TATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAATTCACGAGTGTGATGCGTCCTGTGATTGTTATGTGTGATTGTTCA]
[+] EMBL AK062579 [CTCGCGAAAAAACTAGGGTTTACCCTAGCGGCTCTGGCGGCGGCGAGGCCCCTCCCCTCTCCTCCGACTCCGGCTCTCCTCGGTCGTCCTCCCTCTCTTTTGCCGGTCGTGCCCCCTGCTCCACCGTCACTCTCCGTCGAGCTGAGCACAATGGATAGTTGTCCGTCGCCCATTGCAAGGACAATTGATGACTTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGATTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAA CTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGG AGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGATTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGTTTACTCGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG TATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAATTCACGAGTGTGATGCGTCCTGTGATTGTTATGTGTGATTGTTCA]
[+] EMBL AU095193 [ AAAAACNAGGGTTTACCCNAGCGGCTCTGGCGGCGGCGAGGCCCCNCCCCTCNCCNCCGACNCCGGCTCNCCTCGGTCGTCCNCCCTCTCTTTTGCCGGTCGTNCCCCCNGCTCCACCGTCACNNNCCGTCGAGCTGAGCACAATGGATAGTTGTCCGTCGCCCATNGCAAGGACAATTGATGACNTCTGAAATAAAGCACGGTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTNCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACNGCTTTCCAGTGAAGAGTGGCACTNTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCAT ]
[+] EMBL AA750147 [ cacgagCTGATGGCCCCCATACTTCACTTATACATGGTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATGCTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAG GAAGAGNGGCAC C G NGCAAGAGGAACAAggagag ]
[+] EMBL CF323908 [ TGCTTTCCAGTGAAGAGTGGCACTCTTGCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCATCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCATCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGATTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAACCTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATT GATGGGGNNAGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAAT ]
[-] EMBL CB663178 [ TTGAGACCTTAGACAAGAGATTATTTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATGCCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTTCTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAA CTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGG AGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGATTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGC ]
[-] EMBL CB682963 [ CAAGTCGCCAAATTCATGGGACATCTATGATCCAGTCACAAA CTCTTGGTGTGTGCACAAGAATCCAATGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGG AGTTGGTAACTGTTCACAAGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGAGGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAACGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGAAGGAGTGGATCATGCTTGGTAGGCTGTCTGACAAGCTTACAAGGCCTCCTTGTGAGCTCGTAGGCATTGGGAGAAAGATTTACATTATTGGAAGAGGGCTGAGTATAGTGACAATTGACCTGGATACTGTCAGGGCAGATGGATTCTTGGTGTCCTCTTCCACAGGCCCATTGGTGGAGCATGACTTCCCACCTGAGAGATGCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGTTTACTCGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG TATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGT ]
[-] EMBL D42348 [ CCCGTTGCTAATTGGTG TTAATTGTTTGTAGT TTTTTGCTGTTATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAATTCACGAGTATGATGCGTCCTGTG ]
consensusID : consensus_14535#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[CCNCNTNAGAATTGAAANTTTCCCCNTNTGTTTGNNTTTGNATCCAACCGTTCCTTCNNNGNNCCCGGNACCCGTTTNTACANTTCCGGNGCCCTNNCGNTNCGNCNNCCAAAGTCTTTNNTTNATTTTGNCCNGAANGGAAGNCCNNAAGGNATTTGGNATCCATGCCTTGGTTAGGCCTGTCTTGACAAGGNTTTCCAAGGCCCCCCTTTGTGGNGCCCCNTTNGGNAATTGGGNAGAAANNATTTTNCCATTATTTGGAAAGAGGGGCTNAGTATAAGTGGACANTTGGACCTGGGATANTGTCCAGGGGCNAGATGGATTCCTGGGTGTNCCCTCTTCCNACAGGCCCCATTGGTGGGAGCATGACTTCCCCACCTGNANAGATGCCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGTTTACTCGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTGTATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAAAAAAAAAA]
[+] EMBL AU031010 [CCNCNTNAGAATTGAAANTTTCCCCNTNTGTTTGNNTTTGNATCCAACCGTTCCTTCNNNGNNCCCGGNACCCGTTTNTACANTTCCGGNGCCCTNNCGNTNCGNCNNCCAAAGTCTTTNNTTNATTTTGNCCNGAANGGAAGNCCNNAAGGNATTTGGNATCCATGCCTTGGTTAGGCCTGTCTTGACAAGGNTTTCCAAGGCCCCCCTTTGTGGNGCCCCNTTNGGNAATTGGGNAGAAANNATTTTNCCATTATTTGGAAAGAGGGGCTNAGTATAAGTGGACANTTGGACCTGGGATANTGTCCAGGGGCNAGATGGATTCCTGGGTGTNCCCTCTTCCNACAGGCCCCATTGGTGGGAGCATGACTTCCCCACCTGNANAGATGCCCGGGTTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCCGGAGAAAATGTCACACATGTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGTTTACTCGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTGTATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTTCACACCTATACATATTGAGATAATAACTTGTTCATAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14535#0 TTCCCCTTCTCCGCATCTCGCCTTTTTCCTCCTCCGGGCTGCGGCAATGGCCGAAACCCT 60
consensus_14535#1 ------------------------------------------------------------
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 AGTCCCGCCGCCGCCGCCACCCTCTGATCCCCACCAGATCTAGGATTTGTTT--GTTGTT 118
consensus_14535#1 ---------------------------CTCGCGAAAAAACTAGGGTTTACCCTAGCGGCT 33
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 TCACGGTGCTCCATGCCCTTCTCCTTCCTTTCCACCACAACTCCGCCCACCGCTCTCAAA 178
consensus_14535#1 CTGGCGGCGGCGAGGCCCCTCCCCTCTCCTCCGACTCCGGCTCTCCTCGGTCGTCC---- 89
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 TCCACCGCGTCCACCCCCGCCCGCCTCTGCTCC-TCGTCAGA-TCCGACGC-TTAAGCAC 235
consensus_14535#1 TCCCTCTCTTTTGCCGGTCGTGCCCCCTGCTCCACCGTCACTCTCCGTCGAGCTGAGCAC 149
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 CTTTCCGAGGTGTGATTTTTCCCCCCGATGGACAATTGATGACTTCTGAAATAAAGCACG 295
consensus_14535#1 AATGGATAGTTGTCCGTCGCCCATTGCAAGGACAATTGATGACTTCTGAAATAAAGCACG 209
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 GTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATG 355
consensus_14535#1 GTGGAAAGCTATCCTGTAGCGGCATGGATTCTGATGGCCCCCATACTTCACTTATACATG 269
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 GTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATG 415
consensus_14535#1 GTCTTCCTGATGAGATTGCTATTCTTTGCTTAGCGAGAGTTCCACGGCGATATCATAATG 329
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 CTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTT 475
consensus_14535#1 CTCTCAGGTGTGTCTCAAAGAGATGGAGGGCACTGCTTTCCAGTGAAGAGTGGCACTCTT 389
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 GCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCA 535
consensus_14535#1 GCCGCAAGAGGAACAATTTGGATGAGCCTTGGGTATATGTGATTTGTAGGAGTACGGGCA 449
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 TCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCA 595
consensus_14535#1 TCAAATGCTATGTACTTGCTCCTGATCCTACAACCCGCTCCTTGAAAATTATGCAAGTCA 509
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 TCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGATTAT 655
consensus_14535#1 TCGAACCCCCATGCTCGTCTAGGGAAGGCATTTCCATTGAGACCTTAGACAAGAGATTAT 569
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 TTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATG 715
consensus_14535#1 TTCTTTTGGGTGGTTGTAGCTGGCTAAAAGATGCTAATGATGAAGTATTTTGTTATGATG 629
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 CCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTT 775
consensus_14535#1 CCTCATCAAATTGCTGGAGCAGTGTAGCTCCAATGCCTACTGCTAGGTGCTATTTTGTTT 689
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 CTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGC 835
consensus_14535#1 CTGCAGCTCTGGACAAGAAACTATACATTACTGGTGGACTAGGTTTGACAGACAAGTCGC 749
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 CAAATTCATGGGACATCTATGATCCAGTCACAAACTCTTGGTGTGTGCACAAGAATCCAA 895
consensus_14535#1 CAAATTCATGGGACATCTATGATCCAGTCACAAACTCTTGGTGTGTGCACAAGAATCCAA 809
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 TGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGGAGTTGGTAACTGTTCACA 955
consensus_14535#1 TGCTCACCCCTGACATTGTAAAATTCGTGGCATTGGATGGGGAGTTGGTAACTGTTCACA 869
consensus_14535#2 ------------------------------------------------------------
consensus_14535#0 AGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGA 1015
consensus_14535#1 AGGCTGCCTGGAACAGAATGTACTTTGCAGGTATATATGATCCATTGTGCCGCACTTGGA 929
consensus_14535#2 -------------------CCNCNTNAGAATTGAAANTTTCCCCNTNTGTTTGNNTTTGN 41
* * * * * * ** * ** ** *
consensus_14535#0 GGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAA 1075
consensus_14535#1 GGGGCACTGAGAATGAAATTGCCCTATGTTGGTCTGGATCAACAGTCGTCATGGACGGAA 989
consensus_14535#2 ATCCAACCGTTCCTTCNNNGNNCCCGGN---ACCCGTTTNTACANTT-CCGGNGCCCTNN 97
** * * ** * * * *** * * * *
consensus_14535#0 CGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGA 1135
consensus_14535#1 CGCTCTACATGCTGGAGCAGTCGCTCGGCACAAAGCTGATGATGTGGCAGAAGGAGACGA 1049
consensus_14535#2 CGNTNCGNCNNCCAAAGTCTTTNNTTNATTTTGNCCNGAANGGAAGNCCNNAAGGNATTT 157
** * * ** * * * ** * * * * *
consensus_14535#0 AGGAGTGG-ATCATGCTTGGTAGGCTGTCT-GACAAG--CTTACAAGGCCTCC--TTGTG 1189
consensus_14535#1 AGGAGTGG-ATCATGCTTGGTAGGCTGTCT-GACAAG--CTTACAAGGCCTCC--TTGTG 1103
consensus_14535#2 GGNATCCATGCCTTGGTTAG--GCCTGTCTTGACAAGGNTTTCCAAGGCCCCCCTTTGTG 215
* * * ** ** * * ****** ****** ** ******* ** *****
consensus_14535#0 AG---CTCGTAGGCATT--GGGAGAAAGA---TTTACATTATTGGAAGAG---GGCTGAG 1238
consensus_14535#1 AG---CTCGTAGGCATT--GGGAGAAAGA---TTTACATTATTGGAAGAG---GGCTGAG 1152
consensus_14535#2 GNGCCCCNTTNGGNAATTGGGNAGAAANNATTTTNCCATTATTTGGAAAGAGGGGCTNAG 275
* * ** * * ** ***** ** ******* * * ** **** **
consensus_14535#0 TATAGT--GACAATTG-ACCTGG-ATACTGTCAGGG---CAGATGGGTTCTTGG---TGT 1288
consensus_14535#1 TATAGT--GACAATTG-ACCTGG-ATACTGTCAGGG---CAGATGGATTCTTGG---TGT 1202
consensus_14535#2 TATAAGTGGACANTTGGACCTGGGATANTGTCCAGGGGCNAGATGGATTCCTGGGTGTNC 335
**** **** *** ****** *** **** ** ****** *** *** *
consensus_14535#0 CCTCTTCCA-CAGGCCC-ATTGGTGG-AGCATGACTTCCC-ACCTGA-GAGATGCC-GGG 1342
consensus_14535#1 CCTCTTCCA-CAGGCCC-ATTGGTGG-AGCATGACTTCCC-ACCTGA-GAGATGCC-GGG 1256
consensus_14535#2 CCTCTTCCNACAGGCCCCATTGGTGGGAGCATGACTTCCCCACCTGNANAGATGCCCGGG 395
******** ******* ******** ************* ***** ******* ***
consensus_14535#0 TTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCC-GGAGAAAATGTCACACAT 1401
consensus_14535#1 TTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCC-GGAGAAAATGTCACACAT 1315
consensus_14535#2 TTATCAGCATCTGAAGGCATCAGCTTAACTGTATATTGTCCCGGAGAAAATGTCACACAT 455
***************************************** ******************
consensus_14535#0 GTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGT 1461
consensus_14535#1 GTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGT 1375
consensus_14535#2 GTGAAGGTGACATGGGTTGATTGATGCACATATGAAATAAGGCAATCCTCCAGGCATTGT 515
************************************************************
consensus_14535#0 TTACTCGAGAGAGAGTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG 1521
consensus_14535#1 TTACTCGAGAGA--GTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG 1433
consensus_14535#2 TTACTCGAGAGA--GTGCCCGTTGCTAATTGGTGTTTAATTGTTTGTAGTATTTTTGCTG 573
************ **********************************************
consensus_14535#0 TATCTCCGACTTGTGTGCATGTA-TGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTT 1580
consensus_14535#1 TATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTT 1493
consensus_14535#2 TATCTCCGACTTGTGCCCGTTTGCTGTAACAAACGAAGTCTGAGGTTCAGTTGTTTATTT 633
*************** * * * ************************************
consensus_14535#0 CACACCTATACATATTGAGATAATAACTTGTTCATAAAAAAAAAA--------------- 1625
consensus_14535#1 CACACCTATACATATTGAGATAATAACTTGTTCATAATTCACGAGTGTGATGCGTCCTGT 1553
consensus_14535#2 CACACCTATACATATTGAGATAATAACTTGTTCATAAAAAAAAAA--------------- 678
************************************* * *
consensus_14535#0 ----------------------
consensus_14535#1 GATTGTTATGTGTGATTGTTCA 1575
consensus_14535#2 ----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||