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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14538#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1224 fasta sequence
[CTCCTATCGTCATCCGCTCTTCTTCCCCTCTTCCCCACTCGCACCAACCCCAACCCCCCCAACCGCCGCCGCCGCCGCCGACGACCCACCGGTCGCCGCGTCGCCGGAGTCGCGTACTGGAGAGGGGGGCGGAGAGGCACCAGCCGCCCCATGGCGTTCCACTACCCGGACCACGGCCTCGCCATGGACCCGTCCTCCGCCGCGGCGTCGTCGCCCAACCCTAGCTTCTCCCCCGGAGGCGGGGGC-GGGGGCG-----G---CAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCTTGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCA-CCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTTAGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCA-CCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCTGCTTAAGCTCGTTCTTCAGCTCATGCCGTACACGCTCAACCAAGGATCTTTCACCCTCGGTCAGCATTAAGGGACCAAAGCCCATGCCGTCTGACCCATCATTTCCATCAAACATGTTGGCTTCACTGTCCACTTGGTTATCTTCATCATCAGACATAGTCGCTCCAGTCCCTTCACCAGGAGATGCCCCTGTTAGACTTTGTAAAGACTGTTCAAGTTCCCAGCACCCCATCACTGCTTCCATTGCATGAACACGCACATGCTGCTGAAGTTGTTCCTTGAATGAGCAAAGAAGCAACACATAATGTGTCATGAAGAGGTCGAGCTCCTCGCCACCGGAGGGGCCACCGGCGGCGGCGGCGGCGGAGGCGGCTGCGAGGGGAGGCGGGCGCGCGGCGATCTGCGCGTCGATGCGGGGGAGCTGGTCCACGGGGGTGGCGACGCGGAGGCAGGCGACGTGCGCCTCGAGCAGGCGCTCGTAGAGCGGGTGCGCCGCGACGGC]
[+] EMBL CB659998 [CTCCTATCGTCATCCGCTCTTCTTCCCCTCTTCCCCACTCGCACCAACCCCAACCCCCCCAACCGCCGCCGCCGCCGCCGACGACCCACCGGTCGCCGCGTCGCCGGAGTCGCGTACTGGAGAGGGGGGCGGAGAGGCACCAGCCGCCCCATGGCGTTCCACTACCCGGACCACGGCCTCGCCATGGACCCGTCCTCCGCCGCGGCGTCGTCGCCCAACCCTAGCTTCTCCCCCGGAGGCGGGGGC GGGGGCG G CAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCTTGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCA CCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTTAGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCA CCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCTGCTTAAG ]
[+] EMBL CB667101 [ AACCCCCCCAACCGCCGCCGCCGCCGCCGACGACCCACCGGTCGCCGCGTCGCCGGAGTCGCGTACTGGAGAGGGGGGCGGAGAGGCACCAGCCGCCCCATGGCGTTCCACTACCCGGACCACGGCCTCGCCATGGACCCGTCCTCCGCCGCGGCGTCGTCGCCCAACCCTAGCTTCTCCCCCGGAGGCGGGGGCGGGGGGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCTTGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCA CCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTTAGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCA CCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCTGCTTAAGCTCGTTCTTCAGCTCATGCCGTACACGCTCAACCAAGGATCTTTCACCCTCGGTCAGCATTAAGGGACC ]
[-] EMBL CB657719 [ ATCACCTGTAACGTTTC TTTCTTCTTGGTC TTTCACCCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTTAGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCA CCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCTGCTTAAGCTCGTTCTTCAGCTCATGCCGTACACGCTCAACCAAGGATCTTTCACCCTCGGTCAGCATTAAGGGACCAAAGCCCATGCCGTCTGACCCATCATTTCCATCAAACATGTTGGCTTCACTGTCCACTTGGTTATCTTCATCATCAGACATAGTCGCTCCAGTCCCTTCACCAGGAGATGCCCCTGTTAGACTTTGTAAAGACTGTTCAAGTTCCCAGCACCCCATCACTGCTTCCATTGCATGAACACGCACATGCTGCTGAAGTTGTTCCTTGAATGAGCAAAGAAGCAACACATAATGTGTCATGAAGAGGTCGAGCTCCTCGCCACCGGAGGGGCCACCGGCGGCGGCGGCGGCGGAGGCGGCTGCGAGGGGAGGCGGGCGCGCGGCGATCTGCGCGTCGATGCGGGGGAGCTGGTCCACGGGGGTGGCGACGCGGAGGCAGGCGACGTGCGCCTCGAGCAGGCGCTCGTAGAGCGGGTGCGCCGCGACGGC]
[-] EMBL C28225 [ GGCCACTTAGAATGAGCTTGCCACCAAGCTTTNAGTATAGATGCAGTATCACCCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCTGCTTAAGCTCGTTCTTCAGCTCATGCCGTACACGCTCAACCAAGGATCTTTCACCCTCGGTCAGCATTAAGGGACCAAAGCCCATGCCGTCTGACCCATTATTTCCATCAAACATGTTGGCTTCACTGTCCACTTGGTTATCTTCATCATCAGACATAGTCGCTCCAGTCCCTTCACCAGGAGATGCCCCTGTTAGACTTTGTAAAGACTGTTCAAGTTCCCAGCACCCCATNACTGCTTCCATTGCATGAACACGCACATGCTGCTGAAGTTGTTCCTTGAATGAGCAAAGAAGCAACA ]
consensusID : consensus_14538#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1148 fasta sequence
[TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAACCCCTTACGCACATATACTCCGTTTTTTTATACACA-GTGAATTACCAAAACATGTTACACCTCAACACTGCATCGTGCATCAAAACAGAGAACATATCCAATCC-GAATCTTAAA-GCTCCTAATATCATATATATATTACATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCC-GTTCATC-G-GTTATACA-GAACATTCCTTCACAA-AATCACATTAGCAGACAGTC-GATGCTATACTGCGAAA-GTCAAATACCACCCACCTCAGTTTTGTGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCT-TGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCACCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTT-AGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCACCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCT-GCTT-AAGCTCGTTCTTCAGCTCATGCCGTACACGCTCAACCAAGGATCTTTCACCCTC-GGTCAGCATTAAGGGACCAAAGCCCATGCCGTCTGACCCATCATTTCCATCAAACATGTTGGCTTCACTGTCCACTTGGTTATCTTCATCATCAGACATAGTCGCTCCAGTCCCTTCACCAGGAGATGCCCCTGTTAGACTTTGTAAAGACTGTTCAAGTTCCCAGCACCCCATCACTGCTTCCATTGCATGAACACGCACATGCTGCTGAAGTTGTTCCTTGAATGAGCAAAGAAGCAACACATAATGTGTCTGCAATTAAGAGAAGTATGTTAGAGTCCACAAG]
[+] EMBL CB653718 [TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAACCCCTTACGCACATATACTCCGATATTTTATACACA GGGAATTACCAAAACATGTTACACCTCAACACTGCATCGGGCATCAAAACAGAAAACATATCCAATCC GAATCTTAAA GCTCCTAATATCATATATATATTACATGATAAATAAAATACACAATTACATACACAATACAATTCTTCCTTCC GTTCATC G GTTATACA AAACATTCCTTCACAA AATCACATTAACAAACAGTC GATGCTATACTGCGAAA GTCAAATACCACCCACCTCAGTTTTGGGCGCTTATGCTACAATTTCAAATGACTTCTTTGCCCAGTGATTACCCCTATGATCGCAATTCCCT TGGGAATGGGCCGGTCTCCAAATTTTGTCCCACCAGAGCACGAAAGAATGTACTACCCTCTTCACAATAAAAGGGACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCACCAAAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTT AGAATGAGCTTGCCACCAAG ]
[+] EMBL CB660001 [ TACTCCGATATTTTATACACA GTGAATTACCCCAACATGTTACACCTCAACACTGCATCGTGCATCAAAACAGAGAACATATCCAATCC GAATCTTAAA GCTCCTAATATCATATATATATTACATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCC GTTCATC G GTTATACA GAACATTCCTTCACAA AATCACATTAGCAGACAGTC GATGCTATACTGCGAAA GTCAAATACCACCCACCTCAGTTTTGTGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCT TGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCACCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTT AGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCACCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCT GCTT AAGCTCGTTCTTCAGCTCATGCCGTACACGCTCAACCAAGGATCTTTCACCCTC GGTCAGCATTAAGGGACCAAAGCCCATGCCGTC ]
[-] EMBL AB007627 [ tTTTTTTTATACACA GTGAATTACCAAAACATGTTACACCTCAACACTGCATCGTGCATCAAAACAGAGAACATATCCAATCC GAATCTTAAA GCTCCTAATATCATATATATATTACATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCC GTTCATC G GTTATACA GAACATTCCTTCACAA AATCACATTAGCAGACAGTC GATGCTATACTGCGAAA GTCAAATACCACCCACCTCAGTTTTGTGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCT TGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCACCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTT AGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCACCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCT GCTT AAGCTCGTTCTTCAGCTCATGCCGTACACGCTCAACCAAGGATCTTTCACCCTC GGTCAGCATTAAGGGACCAAAGCCCATGCCGTCTGACCCATCATTTCCATCAAACATGTTGGCTTCACTGTCCACTTGGTTATCTTCATCATCAGACATAGTCGCTCCAGTCCCTTCACCAGGAGATGCCCCTGTTAGACTTTGTAAAGACTGTTCAAGTTCCCAGCACCCCATCACTGCTTCCATTGCATGAACACGCACATGCTGCTGAAGTTGTTCCTTGAATGAGCAAAGAAGCAACACATAATGTGTCTGCAATTAAGAGAAGTATGTTAGAGTCCACAAG]
[-] EMBL AB061817 [ tTTTTTTTATACACA GTGAATTACCAAAACATGTTACACCTCAACACTGCATCGTGCATCAAAACAGAGAACATATCCAATCC GAATCTTAAA GCTCCTAATATCATATATATATTACATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCC GTTCATC G GTTATACA GAACATTCCTTCACAA AATCACATTAGCAGACAGTC GATGCTATACTGCGAAA GTCAAATACCACCCACCTCAGTTTTGTGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCT TGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCACCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTT AGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCACCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCT GCTT AAGCTCGTTCTTCAGCTCATGCCGTACACGCTCAACCAAGGATCTTTCACCCTC GGTCAGCATTAAGGGACCAAAGCCCATGCCGTCTGACCCATCATTTCCATCAAACATGTTGGCTTCACTGTCCACTTGGTTATCTTCATCATCAGACATAGTCGCTCCAGTCCCTTCACCAGGAGATGCCCCTGTTAGACTTTGTAAAGACTGTTCAAGTTCCCAGCACCCCATCACTGCTTCCATTGCATGAACACGCACATGCTGCTGAAGTTGTTCCTTGAATGAGCAAAGAAGCAACACATAATGTGTC ATGAAGAGgtcga ]
[-] EMBL BI810936 [ TTTTTTTATACACATGTGAATTACCAAAACATGTTACATCTCAACACTGCATCGTGCATCAAAACAGAGAACATATCCAATCCTGAATCTTAAATGCTCCTAATATCATATATATATTACATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCCTGTTCATCTGTGTTATACATGAACATTCCTTCACAACAATCACATTAGCAGACAGTCTGATGCTATACTGCGAAATGTCAAAT ]
[+] EMBL CB645698 [ TTTTATACACC TTTAATTACCAAAACATGTTACACCTCAACACTGCATCGTGCATCAAAACAGAGAACATATCCAATCC GAATCTTAAA GCTCCTAATATCATATATATATTACATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCC GTTCATC G GTTATACA GAACATTCCTTCACAA AATCACATTAGCAGACAGTC GATGCTATACTGCGAAA GTCAAATACCACCCACCTCAGTTTTGTGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCT TGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCACCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTT AGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCACCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCT GCTT AAGCTCGTTCTTCAGCTCATGCCGTACACGCTC ]
[+] EMBL CB657720 [ ATACACAGGTGAATTACCAAAACATGTTACACCCCCACACTGCATCGTGCATCAAAACAGAGAACATATCCAATCC GAATCTTAAA GCTCCTAATATCATATATATATTACATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCC GTTCATC G GTTATACA GAACATTCCTTCACAA AATCACATTAGCAGACAGTC GATGCTATACTGCGAAA GTCAAATACCACCCACCTCAGTTTTGTGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCT TGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCACCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTT AGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCACCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCT GCTT AAGCTCGTTCTTCAGCTCATGCCGTACACGCTCAACCAAGGATCTTTCACCCTC GGTCAGCATTAAGGGA CAAAGCCCATGCCGTCTGACC ]
[-] EMBL AU166485 [ tttttTTACCAAAACATGTTACACCTCAACACTGCATCGTGCATCAAAACAGAGAACATATCCAATCC GAATCTTAAA GCTCCTAATATCATATATATATTACATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCC GTTCATC G GTTATACA GAACATTCCTTCACAA AATCACATTAGCAGACAGTC GATGCTATACTGCGAAA GTCAAATACCACCCACCTCAGTTTTGTGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCT TGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGNTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCA ]
[+] EMBL CB667102 [ CACCTCAACACTGCATCGTGCATCAAAACAGAGAACATATCCAATCC GAATCTTAAA GCTCCTAATATCATATATATATTACATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCC GTTCATC G GTTATACA GAACATTCCTTCACAA AATCACATTAGCAGACAGTC GATGCTATACTGCGAAA GTCAAATACCACCCACCTCAGTTTTGTGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCT TGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCACCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTT AGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCACCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACAAGCTTTTCTTTGTACCCCT GCTT AAGCTCGTTCTTCAGCTCATGCCGTACACGCTCAACCAAGGATCTTTCACCCTC GGTCAGCATTAAGGGACCAAAGCCCATGCCGTCTGACCCATCATTTCCATCAAACATGTTGGCTTCACTGTCCACTTGGTTA ]
[-] EMBL BI807149 [ ATCC GAATCTTAAA GCTCCTAATATCATATATATATTACATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCC GTTCATC G GTTATACA GAACATTCCTTCACAA AATCACATTAGCAGACAGTC GATGCTATACNGGGAAA GTCAAATACCACCCACCTCAGTTTGGGGCGCTTATGCTACAATTTCAGATGACTTCTTGGCCCAGTGATTACGCCTATGATCGCAATTCCCTGGGTGAATGGGCCGGTCTCCAGATTTGGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATGGNTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTGGGTCTTTTCACCAGAGGATGCTGGGTGGCTATGCCAGTTTCG TGGCG TGGTTAATGAACCAATGGTGGATTTGGTTCAGTTGTAACCCCGTTTCCTG ACCAGG GGGGCTTGTCGTCTTCAG TGGGTATGGCCACTTAAGAATGAG TTGGCA ]
[-] EMBL C97565 [ tttt tttttTTAAA GCTCCTAATATCATATATATATTACATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCC GTTCATC G GTTATACA GAACATTCCTTCACAA AATCACATTAGCAGACAGTC GATGCTATACTGCGAAA GTCAAATACCACCCACCTCAGTTTTGTGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCT TGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCACCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTT AGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCAGTATCACCAGGAAGTTTACCAGCTCTCCGCTTGCGAANGATCTCTTCCCTAATATCCACAAGCTTTTCCTTGTANCCCTGGCTTAAAGCTCGTTCTTCAGCTCATGCCGTA AAGGTCAACCAAGG TCTTTCAACCTCNGGTCAGCATTAANGGACCAAAGCCCATGCCGTCTGANCCATCAATTCCAacna ]
[+] EMBL CB645697 [ tattACCCACCTCAGTTTTGTGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCCAGTGATTACGCCTATGATCGCAATTCCCT TGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTCTTGGTCTTTTCACCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCGTCTTCAGTTGGGTATGGCCACTT AGAATGAGCTTGCCACCAAGCTTTTAGT ]
consensusID : consensus_14538#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence
[TCATCCGCTCTTCTTCCCCTCTTCCCCACTCGCACCAACCCCAACCCCCCCAACCGCCGCCGCCGCCGCCGACGACCCACCGGTCGCCGCGTCGCCGGAGTCGCGTACCGGAGAGGGGGGCGGAGAGGCACCAGCCGCCCCATGGCGTTCCACTACCCGGACCACGGCCTCGCCATGGACCCGTCCTCCGCCGCGGCGTCGTCGCCCAACCCTAGCTTCTCCCCCGGAGGCGGGGGCGGGGCCGGGGTCGGGGGAGGGGAG]
[+] EMBL CF569139 [TCATCCGCTCTTCTTCCCCTCTTCCCCACTCGCACCAACCCCAACCCCCCCAACCGCCGCCGCCGCCGCCGACGACCCACCGGTCGCCGCGTCGCCGGAGTCGCGTACCGGAGAGGGGGGCGGAGAGGCACCAGCCGCCCCATGGCGTTCCACTACCCGGACCACGGCCTCGCCATGGACCCGTCCTCCGCCGCGGCGTCGTCGCCCAACCCTAGCTTCTCCCCCGGAGGCGGGGGCGGGGCCGGGGTCGGGGGAGGGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14538#0 ------------------------------------------------------------
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAACCCCTTACGCACATATACT 60
consensus_14538#0 ------------------------------------------------------------
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 CCGTTTTTTTATACACAGTGAATTACCAAAACATGTTACACCTCAACACTGCATCGTGCA 120
consensus_14538#0 ------------------------------------------------------------
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 TCAAAACAGAGAACATATCCAATCCGAATCTTAAAGCTCCTAATATCATATATATATTAC 180
consensus_14538#0 ------------------------------------------------------------
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ATGATAAATAAGATACACAATTACATACACAATACAATTCTTCCTTCCGTTCATCGGTTA 240
consensus_14538#0 ------------------------------------------------------------
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 TACAGAACATTCCTTCACAAAATCACATTAGCAGACAGTCGATGCTATACTGCGAAAGTC 300
consensus_14538#0 ------------------------------------------------------------
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 AAATACCACCCACCTCAGTTTTGTGCGCTTATGCTACAATTTCAGATGACTTCTTTGCCC 360
consensus_14538#0 ------------------------------------------------------------
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 AGTGATTACGCCTATGATCGCAATTCCCTTGTGAATGGGCCGGTCTCCAGATTTTGTCAC 420
consensus_14538#0 ------------------------------------------------------------
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ACCAGAGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGT 480
consensus_14538#0 ------------------------------------------------------------
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 TTCATGTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTT 540
consensus_14538#0 ------------------------------------------------------------
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 TCTTCTTGGTCTTTTCACCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGT 600
consensus_14538#0 ------CTCCTATCGTCATCCGCTCTTCTT----CCCCTCTTCCCCACTCGCACCAACCC 50
consensus_14538#2 ---------------TCATCCGCTCTTCTT----CCCCTCTTCCCCACTCGCACCAACCC 41
consensus_14538#1 TAATGAACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCT 660
* ** *** ** **** **** * * **
consensus_14538#0 CAACCCCCCCAACCGCCGCCGCCGCCGCCGACGACCCACCGGTCGCCGCGTCGCCGGAGT 110
consensus_14538#2 CAACCCCCCCAACCGCCGCCGCCGCCGCCGACGACCCACCGGTCGCCGCGTCGCCGGAGT 101
consensus_14538#1 TGTCGTCTTCAGTTG--GGTATGGCCACTTAGAATGAGCTTGCCACCAAGCTTTTAGTAT 718
* * ** * * *** * * * * * * ** * * *
consensus_14538#0 CGCGTACTGGAGAGGGGGGCGGAGAGGCACCAGCCGCCCCATGGCGTTCCACTACCCGGA 170
consensus_14538#2 CGCGTACCGGAGAGGGGGGCGGAGAGGCACCAGCCGCCCCATGGCGTTCCACTACCCGGA 161
consensus_14538#1 AG-ATGCAGTATCACCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAA 777
* * * * * ** * ** * * * * * * ** *** *
consensus_14538#0 ---CCACG-GCCTCGCCATGGACCCGTCCTCCGCCGCGGCGTCGTCGCCCAACCCTAGCT 226
consensus_14538#2 ---CCACG-GCCTCGCCATGGACCCGTCCTCCGCCGCGGCGTCGTCGCCCAACCCTAGCT 217
consensus_14538#1 TATCCACAAGCTTTTCTTTGTACCCCTGCTTAAGCTCGTTCTTCAGCTCATGCCGTACAC 837
**** ** * * ** **** * ** * ** * * ** **
consensus_14538#0 TCTCCCCCGGAGGCGG---GGGCGGGGGCGGCAATTTCAGATGACTTCTTTGCCCAGTGA 283
consensus_14538#2 TCTCCCCCGGAGGCGG---GGGCGGGGCCGGGGTCGGGGGAGGGGAG------------- 261
consensus_14538#1 GCTCAACCAAGGATCTTTCACCCTCGGTCAGCATTAAGGGACCAAAGCCCATGCCGTCTG 897
*** ** * * ** * * **
consensus_14538#0 TTACGCCTATGATCGCAATTCCCTTGTGAATGGGCCGGTCTCCAGATTTTGTCACACCAG 343
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ACCCATCATTTCCATCAAACATGTTGGCTTCACTGTCCACTTGGTTATCTTCATCATCAG 957
consensus_14538#0 AGCACGAGAGAATGTACTACACTCTTCACAATAAAAGGTACTGTTTACATCTAGTTTCAT 403
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ACATAGTCGCTCCAGTCCCTTCACCAGGAGATGCCCCTGTTAGACTTTGTAAAGACTGTT 1017
consensus_14538#0 GTTGAACCAATCTACCACGATTGCTCAGCACCACCATCACCTGTAACGTTTCTTTTCTTC 463
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 CAAGTTCCCAGCACCCCATCACTGCTTCCATTGCATGAACACGCACATGCTGCTGAAGTT 1077
consensus_14538#0 TTGGTCTTTTCACCAGAGGATGCTGGGTTGCTATGCCAGTTTCGTTTGCGTTGGTTAATG 523
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 GTTCCTTGAATGAGCAAAGAAGCAACACATAATGTGTCTGCAATTAAGAGAAGTATGTTA 1137
consensus_14538#0 AACCAATTGTTGATTTGCTTCAGTTGTAACCCCGTTTCCTGCACCAGGCGGGCCTTGTCG 583
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 GAGTCCACAAG------------------------------------------------- 1148
consensus_14538#0 TCTTCAGTTGGGTATGGCCACTTAGAATGAGCTTGCCACCAAGCTTTTAGTATAGATGCA 643
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ------------------------------------------------------------
consensus_14538#0 GTATCACCAGGAAGTTTACCAGCTCTCCGCTTGCGAAGGATCTCTTCCCTAATATCCACA 703
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ------------------------------------------------------------
consensus_14538#0 AGCTTTTCTTTGTACCCCTGCTTAAGCTCGTTCTTCAGCTCATGCCGTACACGCTCAACC 763
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ------------------------------------------------------------
consensus_14538#0 AAGGATCTTTCACCCTCGGTCAGCATTAAGGGACCAAAGCCCATGCCGTCTGACCCATCA 823
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ------------------------------------------------------------
consensus_14538#0 TTTCCATCAAACATGTTGGCTTCACTGTCCACTTGGTTATCTTCATCATCAGACATAGTC 883
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ------------------------------------------------------------
consensus_14538#0 GCTCCAGTCCCTTCACCAGGAGATGCCCCTGTTAGACTTTGTAAAGACTGTTCAAGTTCC 943
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ------------------------------------------------------------
consensus_14538#0 CAGCACCCCATCACTGCTTCCATTGCATGAACACGCACATGCTGCTGAAGTTGTTCCTTG 1003
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ------------------------------------------------------------
consensus_14538#0 AATGAGCAAAGAAGCAACACATAATGTGTCATGAAGAGGTCGAGCTCCTCGCCACCGGAG 1063
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ------------------------------------------------------------
consensus_14538#0 GGGCCACCGGCGGCGGCGGCGGCGGAGGCGGCTGCGAGGGGAGGCGGGCGCGCGGCGATC 1123
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ------------------------------------------------------------
consensus_14538#0 TGCGCGTCGATGCGGGGGAGCTGGTCCACGGGGGTGGCGACGCGGAGGCAGGCGACGTGC 1183
consensus_14538#2 ------------------------------------------------------------
consensus_14538#1 ------------------------------------------------------------
consensus_14538#0 GCCTCGAGCAGGCGCTCGTAGAGCGGGTGCGCCGCGACGGC 1224
consensus_14538#2 -----------------------------------------
consensus_14538#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||