cluster # 14541

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Oryza sativa
cluster # 14541 cluster # 14541 Sequences # 17 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14541#0 length = 2351 sequences # 16

consensus_14541#1 length = 244 sequences # 1

consensusID : consensus_14541#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 2351
fasta sequence

                              [CCGCAAAATCTCACCGAATCTTTCGCCGTCTCCGAGGCTTGCACAACTCTTCTTCCTCATCTTCCGCCGCGGGCGGCG-A-CGGCGGCGGCGGCGGCCATGGCGGCGGCGGAGCAGAGCGCGGAGCAGTTCAGGGGCCAGGCGAGGCTCCCGGGGTTCGCGGCGCCCCGGCGGTACGACCTGCGGCTCGTCCCCGACCTCGACGGGTGCGCCTTCACGGGATCTGTGGACGTCTCCGTCGACGTCACGGCGCCCACCAGGTTCCTCGTGCTCAACGCCGCCGAGCTCGAGGTCTCCCCCGGGGGCGTCCAGTTCAAGCCCCATGGCGCCGAGCAGGAGCTGCACCCAGCGGAGGTTACCAATGTGCCAGAGGATGAGATCCTGATTATCCGCTTCAATGAGGTTCTTCCTGTAGGGGAGGGAACTTTAGTAATTGCATTCAAGGGAA-CTCTGAACGACAAGATGCATGGCTTCTACAGAAGTGTGTATGAACTCAATGGGGAGAAGAAGAACATGGCGGTAACCCAGTTTGAACCTGCTGACGCAAGGCGTTGTTTTCCTTGTTGGGATGAGCCCTCTTTTAAGGCTATATTCAAAATTACTCTAGAAGTTCCGTCTGAGACCGTTGCATTGTCAAACATGCCAGTGGTTGAAGAGAAGGTCAATGGCCTTATCAAAGCTGTCTATTTTCAAGAAACACCAATAATGTCAACATACCTAGTGGCTGTTATTGTTGGCATGTTCGACTATGTGGAAGCTTTCACCACTGATGGCACTAGGGTTCGTGTTTACACTCAAGTTGGCAAGAGTGCCCAGGGAAAGTTTGCACTAGAGGTTGCTGTGAAGACACTGGTCCTCTTCAAGGAGTATTTTGCTGTGCCATACCCACTCCCAAAAATGGACATGATTGCCATTCCTGATTTTGCCTCTGGAGCAATGGAGAACTATGGCTTGGTTACATATCGTGAAACAGCTTTGTTATTTGATGAGAAACACTCTGCAGCTGCGAATAAGCAAAGGGTTGCAGTTGTGGTAGCCCATGAATTAGCTCACCAGTGGTTTGGAAATCTTGTGACAATGGAGTGGTGGACACACCTATGGCTTAACGAGGGTTTTGCGACATGGGTCTCCTACTTAGCTGCAGACAATTTCTTTCCTGAATGGAATGTTTGGACCCAATTTCTTGAGGAATCTACAACAGGTTTCAAGTTAGATGCCCTTGCAGGGTCACATCCAATTGAGGTCGACGTAAATCACGTTGATGAAATAGATGAAATATTTGATGCTATAAGCTACAGGAAAGGAGCTGCTGTTATTCGGATGCTGCAAAGCTATCTTGGGGCTGAAACTTTTCAGAAATCTCTGGCCGCATACATCGAAAAGTTCGCATATTCAAATGCCAAGACTGAGGACTTGTGGGCTGCCCTTGAAGAGGGGTCTGGTGAACCAGTGAAAACATTAATGCATTCATGGACAAAGCAGCAAGGGTACCCTGTTGTTAATGTGAAGCTCAAGGATGGAAAGCTAGAGATGGAGCAGACACAGTTCCTATCAAGCGGGGCTGAAGGAGTTGGGCAATGGGTGGTTCCCATCACACTGTGTTGCTGTTCGTACTCACGTCAAGAGAAGTTCCTTTTTAATGGAAAGCAAGAGGATTTTAATTTGTCAGGGCTTGTAGAATGTCAAAAGAAAGAAGACTTCTGGATTAAACTTAATGTCAATCAGACTGGCTTCTATAGAGTGAGCTATGATGAGGAACTTGCATCTCGACTTAGATATGCAATTGAAGCCAACAAACTGAGTGCAGCAGACAGATATGGTGTACTTGATGACACATATGCCCTCTGTATGGCTGGCAAACAGAAGCTAGTCTCCTTATTGCATTTGATTGCTGCGTACAAGGATGAAACCGAGTATACTGTGCTCGCCCGTGTCATAGATACAAGTCTGAGCATTGTCGAG-ATGGTGGCTGTTGCTGCTCCTGAGGGGTTGGGCAAGCTGAAAAAGTTCCTGATTGACTTTCTTGAGCCATTTGCACAGAGAATTGGTTGGGATGCTAAAAGCGGTGAGGGTCACTTGGATGCATTATTGAGAGGTACACTTTTAACTGCTCTGGCAGAACTTGGCCATGAAGCTACAATAAATGAAGCTGTACGCCGATTTAACATCTTTGTGGAAGATAGAGAAACACCACTACTCCCTCCAGATGTTCGAAAGGCGGCATATGTTGCTTTGATGCAGACAGTGAACAAATCAAACAGAGCCGGCTATGAAT-CACTATTGAAGATCTATAAAGAAACTGATCTGAGCCAGGAAAAAGTCAG-AATTTTAGGTTCTCTAGCATCTTGCCCTGA]

[+] EMBL AK066996             [CCGCAAAATCTCACCGAATCTTTCGCCGTCTCCGAGGCTTGCACAACTCTTCTTCCTCATCTTCCGCCGCGGGCGGCG A CGGCGGCGGCGGCGGCCATGGCGGCGGCGGAGCAGAGCGCGGAGCAGTTCAGGGGCCAGGCGAGGCTCCCGGGGTTCGCGGCGCCCCGGCGGTACGACCTGCGGCTCGTCCCCGACCTCGACGGGTGCGCCTTCACGGGATCTGTGGACGTCTCCGTCGACGTCACGGCGCCCACCAGGTTCCTCGTGCTCAACGCCGCCGAGCTCGAGGTCTCCCCCGGGGGCGTCCAGTTCAAGCCCCATGGCGCCGAGCAGGAGCTGCACCCAGCGGAGGTTACCAATGTGCCAGAGGATGAGATCCTGATTATCCGCTTCAATGAGGTTCTTCCTGTAGGGGAGGGAACTTTAGTAATTGCATTCAAGGGAA CTCTGAACGACAAGATGCATGGCTTCTACAGAAGTGTGTATGAACTCAATGGGGAGAAGAAGAACATGGCGGTAACCCAGTTTGAACCTGCTGACGCAAGGCGTTGTTTTCCTTGTTGGGATGAGCCCTCTTTTAAGGCTATATTCAAAATTACTCTAGAAGTTCCGTCTGAGACCGTTGCATTGTCAAACATGCCAGTGGTTGAAGAGAAGGTCAATGGCCTTATCAAAGCTGTCTATTTTCAAGAAACACCAATAATGTCAACATACCTAGTGGCTGTTATTGTTGGCATGTTCGACTATGTGGAAGCTTTCACCACTGATGGCACTAGGGTTCGTGTTTACACTCAAGTTGGCAAGAGTGCCCAGGGAAAGTTTGCACTAGAGGTTGCTGTGAAGACACTGGTCCTCTTCAAGGAGTATTTTGCTGTGCCATACCCACTCCCAAAAATGGACATGATTGCCATTCCTGATTTTGCCTCTGGAGCAATGGAGAACTATGGCTTGGTTACATATCGTGAAACAGCTTTGTTATTTGATGAGAAACACTCTGCAGCTGCGAATAAGCAAAGGGTTGCAGTTGTGGTAGCCCATGAATTAGCTCACCAGTGGTTTGGAAATCTTGTGACGATGGAGTGGTGGACACACCTATGGCTTAACGAGGGTTTTGCGACATGGGTCTCCTACTTAGCTGCAGACAATTTCTTTCCTGAATGGAATGTTTGGACCCAATTTCTTGAGGAATCTACAACAGGTTTCAAGTTAGATGCCCTTGTAGGGTCACATCCAATTGAGGTCGACGTAAATCACGTTGATGAAATAGATGAAATATTTGATGCTATAAGCTACAGGAAAGGAGCTGCTGTTATTCGGATGCTGCAAAGCTATCTTGGGGCTGAAACTTTTCAGAAATCTCTGGCCGCATACATCGAAAAGTTCGCATATTCAAATGCCAAGACTGAGGACTTGTGGGCTGCCCTTGAAGAGGGGTCTGGTGAACCAGTGAAAACATTAATGCATTCATGGACAAAGCAGCAAGGGTACCCTGTTGTTAATGTGAAGCTCAAGGATGGAAAGCTAGAGATGGAGCAGACACAGTTCCTATCAAGCGGGGCTGAAGGAGTTGGGCAATGGGTGGTTCCCGTCACACTGTGTTGCTGTTCGTACTCACGTCAAGAGAAGTTCCTTTTTAATGGAAAGCAAGAGGATTTTAATTTGTCAGGGCTTGTAGAATGTCAAAAGAAAGAAGACTTCTGGATTAAACTTAATGTCAATCAGACTGGCTTCTATAGAGTGAGCTATGATGAGGAACTTGCATCTCGACTTAGATATGCAATTGAAGCCAACAAACTGAGTGCAGCAGACAGATATGGTGTACTTGATGACACATATGCCCTCTGTATGGCTGGCAAACAGAAGCTAGTCTCCTTATTGCATTTGATTGCTGCGTACAAGGATGAAACCGAGTATACTGTGCTCGCCCGTGTCATAGATACAAGTCTGAGCATTGTCGAG ATGGTGGCTGTTGCTGCTCCTGAGGGGTTGGGCAAGCTGAAAAAGTTCCTGATTGACTTTCTTGAGCCATTTGCACAGAGAATTGGTTGGGATGCTAAAAGCGGTGAGGGTCACTTGGATGCATTATTGAGAGGTACACTTTTAACTGCTCTGGCAGAACTTGGCCATGAAGCTACAATAAATGAAGCTGTACGCCGATTTAACATCTTTGTGGAAGATAGAGAAACACCACTACTCCCTCCAGATGTTCGATAGGCGGCATATGTTGCTTTGATGCAGACAGTGAACAAATCAAACAGAGCCGGCTATGAAT CACTATTGAAGATCTATAAAGAAACTGATCTGAGCCAGGAAAAAGTCAG AATTTTAGGTTCTCTAGCATCTTGCCCTG ]
[+] EMBL AU163555             [            ACCGAATCTTTCGCCGTCTCCGAGGCTTGCACAACTCTTCTTCCTCATCTTCCGCCGCGGGC GCG ACCGGCGGCGGCGGCGGCCATGGCGGCGGCGGA NAGAGCGCGGA NAGTTCAGGGGCCAGGCGAGGCTCCCGGGGTTCGCGGCGCCCCGGCGGTACGACCTGCGGCTCGTCCCCGACCTCGACGGGTGCGCCTTCACGGGATCTGTGGACGTCTCCGTCGACGTCACGGCGCCCACCAGGTTCCTCGTGCTCAACGCCGCCGAGCTCGAGGTCTCCCCCGGGGGCGTCCAGTTCAAGCCCCATGGCGCCGAGCAGGAGCTGCAACCAGCGGAGGTTANCAATGTGCCAGAGGATGAGATCCTGATTATCCGCTTCAATGAGGTTCTTCCTGTAAGGGAAGG ANTTTAGTAATTGCATTCAAAGGAATCT TGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSC107511            [              CGAATCTTTCGCCGTCTCCGAGGCTTGCACAACTCTTCTTCCTCATCTTNCGCCGCGGGC GCGAA CGGCGGCGGCGGCGGCCATGGCGGCGGCGGA NAGAGCGCGGAG AGTTCAGGGGCCAGGCGAGGCTCCCGGGGTTCGCGGCGCCCCGGCGGTACGACCTGCGGCTCGTCCCCGACCTCGACGGGTGCGCCTTCACGGGATCTGTGGACGTCTCCGTCGACGTCACGGCGCCCACCAGGTTCCTCGTGCTCAACGCCGCCGAGCTCGAGGTCTCCCCCGGGGGCGTCCAGTTCAAGCCCCATGGCGCCGAGCAGGAGCTGCACCCAGCGGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB656050             [                        GCCGTCTCCGAGGCTTGCACAACTCTTCTTCCTCATCTTCCGCCGCGGGCGGCG A CGGCGGCGGCGGCGGCCATGGCGGCGGCGGAGCAGAGCGCGGAGCAGTTCAGGGGCCAGGCGAGGCTCCCGGGGTTCGCGGCGCCCCGGCGGTACGACCTGCGGCTCGTCCCCGACCTCGACGGGTGCGCCTTCACGGGATCTGTGGACGTCTCCGTCGACGTCACGGCGCCCACCAGGTTCCTCGTGCTCAACGCCGCCGAGCTCGAGGTCTCCCCCGGGGGCGTCCAGTTCAAGCCCCATGGCGCCGAGCAGGAGCTGCACCCAGCGGAGGTTACCAATGTGCCAGAGGATGAGATCCTGATTATCCGCTTCAATGAGGTTCTTCCTGTAGGGGAGGGAACTTTAGTAATTGCATTCAAGGGAA CTCTGAACGACAAGATGCATGGCTTCTACAGAAGTGTGTATGAACTCAATGGGGAGAAGAAGAACATGGCGGTAACCCAGTTTGAACCTGCTGACGCAAGGCGTTGTTTTCCTTGTTGGGATGAGCCCTCTTTTAAGGCTATATTCAAAATTACTCTAGAAGTTCCGTCTGAGACCGGTGCATTGTCAAACATGCCAGTGGTTGAAGAGAAGGTCAATGGCCTTATCAAAGCTGTCTATTTTCAAGAAACACCAATAATGTCAACATACCTAGTGGCTGTTATTGTTGGCATGTTCGACTATGTGGAAGCTTTCACCACTGATGGCACTACGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB626849             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCTAGTGGCTGTTATTGTTGGCATGTTCGACTATGTGGAAGCTTTCACCACTGATGGCACTAGGGTTCGTGTTTACACTCAAGTTGGCAAGAGTGCCCAGGGAAAGTTTGCACTAGAGGTTGCTGTGAAGACACTGGTCCTCTTCAAGGAGTATTTTGCTGTGCCATACCCACTCCCAAAAATGGACATGATTGCCATTCCTGATTTTGCCTCTGGAGCAATGGAGAACTATGGCTTGGTTACATATCGTGAAACAGCTTTGTTATTTGATGAGAAACACTCTGCAGCTGCGAATAAGCAAAGGGTTGCAGTTGTGGTAGCCCATGAATTAGCTCACCAGTGGTTTGGAAATCTTGTGACAATGGAGTGGTGGACACACCTATGGCTTAACGAGGGTTTTGCGACATGGGTCTCCTACTTAGCTGCAGACAATTTCTTTCCTGAATGGAATGTTTGGACCCAATTTCTTGAGGAATCTACAACAGGTTTCAAGTTAGATGCCCTTGCAGGGTCACATCCAATTGAGGTCGACGTAAATCACGTTGATGAAATAGATGAAATATTTGATGCTATAAGCTACAGGAAAGGAGCTGCTGTTATTCGGATGCTGCAAAGCTATCTTGGGGCTGAAACTTTTCAGAAATCTCTGGCCGCATACATTGAAAAGTTCGCATATTCAAATGCCAAGACTGAGGACTTGTGGGCTGCCCTTGAAGAGGGGTCTGGTGAACCAGTGAAAACATTAATGCATTCATGGACAAAGCAGCAAGGGTACCCTGTTGTTAATGTGAAGCTCAAGGATGGAAAGCTAGAGATGGAGCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB633656             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATATCCTTAAACAGCTTTGTTATTTGATGAGAAACACTCTGCAGCTGCGAATAAGCAAAGGGTTGCAGTTGTGGTAGCCCATGAATTAGCTCACCAGTGGTTTGGAAATCTTGTGACAATGGAGTGGTGGACACACCTATGGCTTAACGAGGGTTTTGCGACATGGGTCTCCTACTTAGCTGCAGACAATTTCTTTCCTGAATGGAATGTTTGGACCCAATTTCTTGAGGAATCTACAACAGGTTTCAAGTTAGATGCCCTTGCAGGGTCACATCCAATTGAGGTCGACGTAAATCACGTTGATGAAATAGATGAAATATTTGATGCTATAAGCTACAGGAAAGGAGCTGCTGTTATTCGGATGCTGCAAAGCTATCTTGGGGCTGAAACTTTTCAGAAATCTCTGGCCGCATACATTGAAAAGTTCGCATATTCAAATGCCAAGACTGAGGACTTGTGGGCTGCCCTTGAAGAGGGGTCTGGTGAACCAGTGAAAACATTAATGCATTCATGGACAAAGCAGCAAGGGTACCCTGTTGTTAATGTGAAGCTCAAGGATGGAAAGCTAGAGATGGAGCAGACACAGTTCCTATCAAGCGGGGCTGAAGGAGTTGGGCAATGGGTGGTTCCCATCACACTGTGTTGCTGTTCGTACTCACGTCAAGAGAAGTTCCTTTTTAATGGAAAGCAAGAGGATTTTAATTTGTCAGGGCTTGTAGAATGTCAAAAGAAAGAAGACTTCTGGATTAAACTTAATGTCAATCAGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA753472             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTGATGAAATAGATGAAATATTTGATGCTATAAGCTACAGGAAAGGAGCTGCTGTTATTCGGATGCTGCAAAGCTATCTTGGGGCTGAAACTTTTCAGAAATCTCTGGCCGCATACATCGAAAAGTTCGCATATTCAAATGCCAAGACTGAGGACTTGTGGGCTGCCCTTGAAGAGGGGTCTGGTGAACCAGTGAAAACATTAATGCATTCATGGACAAAGCAGCAAGGGTACCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB649236             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AATAACTCAAATATTTGATGCTATAAGCTACAGGAAAGGAGCTGCTGTTATTCGGATGCTGCAAAGCTATCTTGGGGCTGAAACTTTTCAGAAATCTCTGGCCGCATACATCGAAAAGTTCGCATATTCAAATGCCAAGACTGAGGACTTGTGGGCTGCCCTTGAAGAGGGGTCTGGTGAACCAGTGAAAACATTAATGCATTCATGGACAAAGCAGCAAGGGTACCCTGTTGTTAATGTGAAGCTCAAGGATGGAAAGCTAGAGATGGAGCATACACAGTTCCTATCAAGCGGGGCTGAAGGAGTTGGGCAATGGGTGGTTCCCATCACACTGTGTTGCTGTTCGTACTCACGTCAAGAGAAGTTCCTTTTTAATGGAAAGCAAGAGGATTTTAATTTGACAGGGCTTGTAGAATGTCAAAAGAAAGAAGACTTCTGGATTAAACTTAATGTCAATCAGACTGGCTTCTATAGAGTGAGCTATGATGAGGAACTTGCATCTCGACTTATATATGCAATTGAAGCCAACAAACTGAGTGCAGCAGACAGATATGGTGTACTTGATGACACATATGCCCTCTGTATGGCTGGCAAACAGAAGCTAGTCTCCTTATTGCATTTGATTGCTGCGTACAAGGATGAAACCGAGTATACTGTGCTCGCCCGTGTCATAGATACAAGTCTGAGCATTGTCGAG ATGGTGGCTGTTGCTGCTCCTGAGGGGTTGGGCAAGCTGAAAAAGTTCCTGATTGACTTTCTTGAGCCATTTGCACATAGAATTGGTTG                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB674241             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCTGTTGTTAATGTGAAGCTCAAGGATGGAAAGCTAGAGATGGAGCAGACACAGTTCCTATCAAGCGGGGCTGAAGGAGTTGGGCAATGGGTGGTTCCCATCACACTGTGTTGCTGTTCGTACTCACGTCAAGAGAAGTTCCTTTTTAATGGAAAGCAAGAGGATTTTAATTTGTCAGGGCTTGTAGAATGTCAAAAGAAAGAAGACTTCTGGATTAAACTTAATGTCAATCAGACTGGCTTCTATAGAGTGAGCTATGATGAGGAACTTGCATCTCGACTTAGATATGCAATTGAAGCCAACAAACTGAGTGCAGCAGACAGATATGGTGTACTTGATGACACATATGCCCTCTGTATGGCTGGCAAACAGAAGCTAGTCTCCTTATTGCATTTGATTGCTGCGTACAAGGATGAAACCGAGTATACTGTGCTCGCCCGTGTCATAGATACAAGTCTGAGCATTGTCGAG ATGGTGGCTGTTGCTGCTCCTGAGGGGTTGGGCAAGCTGAAAAAGTTCCTGATTGACTTTCTTGAGCCATTTGCACAGAGAATTGGTTGGGATGCTAAAAGCGGTGAGGGTCACTTGGATGCATTATTGAGAGGTACACTTTTAACTGCTCTGGCAGAACTTGGCCATGAAGCTACAATAAATGAAGCTGTACGCCGATTTAACATCTTTGTGGAAGATAGAGAAACACCACTACTCCCTCCAGATGTTCGAAAGGCGGCATATGTTGCTTTGATGCAGACAGTGAACAAATTAAACAGAGCCGGCTATGAAT CACTATTGAAGATCTATAAAGAAACTGATCT                                                 ]
[+] EMBL CB652914             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAAGCTAGAGATGGAGCAGACACAGTTCCTATCAAGCGGGGCTGAAGGAGTTGGGCAATGGGTGGTTCCCATCACACTGTGTTGCTGTTCGTACTCACGTCAAGAGAAGTTCCTTTTTAATGGAAAGCAAGAGGATTTTAATTTGTCAGGGCTTGTAGAATGTCAAAAGAAAGAAGACTTCTGGATTAAACTTAATGTCAATCAGACTGGCTTCTATAGAGTGAGCTATGATGAGGAACTTGCATCTCGACTTAGATATGCAATTGAAGCCAACAAACTGAGTGCAGCAGACAGATATGGTGTACTTGATGACACATATGCCCTCTGTATGGCTGGCAAACAGAAGCTAGTCTCCTTATTGCATTTGATTGCTGCGTACAAGGATGAAACCGAGTATACTGTGCTCGCCCGTGTCATAGATACAAGTCTGAGCATTGTCGAG ATGGTGGCTGTTGCTGCTCCTGAGGGGTTGGGCAAGCTGAAAAAGTTCCTGATTGACTTTCTTGAGCCATTTGCACAGAGAATTGGTTGGGATGCTAAAAGCGGTGAGGGTCACTTGGATGCATTATTGAGAGGTACACTTTTAACTGCTCTGGCAGAACTTGGCCATGAAGCTACAATAAATGAAGCTGTACGCCGATTTAACATCTTTGTGGAAGATAGAGAAACACCACTACTCCCTCCAGATGTTCGAAAGGCGGCATATGTTGCTTTGATGCAGACAGTGAACAAATCAAACAGAGCCGGCTATGAAT CACTATTGAAGATCTATAAAGAAACTGATCTGAGCCA                                           ]
[+] EMBL CF280445             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAGAAGTTCCTTTTTAATGGAAAGCAAGAGGATTTTAATTTGTCAGGGCTTGTAGAATGTCAAAAGAAAGAAGACTTCTGGATTAAACTTAATGTCAATCAGACTGGCTTCTATAGAGTGAGCTATGATGAGGAACTTGCATCTCGACTTAGATATGCAATTGAAGCCAACAAACTGAGTGCAGCAGACAGATATGGTGTACTTGATGACACATATGCCCTCTGTATGGCTGGCAAACAGAAGCTAGTCTCCTTATTGCATTTGATTGCTGCGTACAAGGATGAAACCGAGTATACTGTGCTCGCCCGTGTCATAGATACAAGTCTGAGCATTGTCGAGAATGGTGG                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF311132             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACTTGATGACACATATGCCCTCTGTATGGCTGGCAAACAGAAGCTAGTCTCCTTATTGCATTTGATTGCTGCGTACAAGGATGAAACCGAGTATACTGTGCTCGCCCGTGTCATAGATACAAGTCTGAGCATTGTCGAG ATGGTGGCTGTTGCTGCTCCTGAGGGGTTGGGCAAGCTGAAAAAGTTCCTGATTGACTTTCTTGAGCCATTTGCACAGAGAATTGGTTGGGATGCTAAAAGCGGTGAGGGTCACTTGGATGCATTATTGAGAGGTACACTTTTAACTGCTCTGGCAGAACTTGGCCATGAAGCTACAATAAATGAAGCTGTACGCCGATTTAACATCTTTGTGGAAGATAGAGAAACACCACTACTCCCTCCAGATGTTCGAAAGGCGGCATATGTTGCTTTGATGCAGACAGTGAACAAATCAAACAGAGCCGGCTATGAATNCACTATTGAAGATCTATAAAGAAACTGATCTGAGCCAGGAAAAAGTCAGAAATTTTAGGTT                   ]
[+] EMBL CF306857             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTCTTGAGCCATTTGCACAGAGAATTGGTTGGGATGCTAAAAGCGGTGAGGGTCACTTGGATGCATTATTGAGAGGTACACTTTTAACTGCTCTGGCAGAACTTGGCCATGAAGCTACAATAAATGAAGCTGTACGCCGATTTAACATCTTTGTGGAAGATAGAGAAACACCACTACTCCCTCCAGATGTTCGAAAGGCGGCATATGTTGCTTTGATGCAGACAGTGAACAAATCAAACAGAGCCGGCTATGAAT CACTATTGAAGATCTATAAAGAAACTGATCTGAGCCAGGAAAAAGTCAG AATTTTAGGTTCTCTAGCATCTTGCCCTG ]
[-] EMBL CB674242             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTTTGATGCAGACAGTGAACAAATTAAACAGAGCCGGCTATGAAT CACTATTGAAGATCTATAAAGAAACTGATCTGAGCCAGGAAAAAGTCAG AATTTTAGGTTCTCTAGCATCTTGCCCTGA]
[-] EMBL CB652915             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAGTGAACAAATCAAACAGAGCCGGCTATGAAT CACTATTGAAGATCTATAAAGAAACTGATCTGAGCCAGGAAAAAGTCAG AATTTTAGGTTCTCTAGCATCTTGCCCTGA]
[-] EMBL CB656051             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GATCTGAGCCAGGAAAAAGTCAG AATTTTAGGTTCTCTAGCATCTTGCCCTGA]




>consensus_14541#0
CCGCAAAATCTCACCGAATCTTTCGCCGTCTCCGAGGCTTGCACAACTCTTCTTCCTCAT
CTTCCGCCGCGGGCGGCGACGGCGGCGGCGGCGGCCATGGCGGCGGCGGAGCAGAGCGCG
GAGCAGTTCAGGGGCCAGGCGAGGCTCCCGGGGTTCGCGGCGCCCCGGCGGTACGACCTG
CGGCTCGTCCCCGACCTCGACGGGTGCGCCTTCACGGGATCTGTGGACGTCTCCGTCGAC
GTCACGGCGCCCACCAGGTTCCTCGTGCTCAACGCCGCCGAGCTCGAGGTCTCCCCCGGG
GGCGTCCAGTTCAAGCCCCATGGCGCCGAGCAGGAGCTGCACCCAGCGGAGGTTACCAAT
GTGCCAGAGGATGAGATCCTGATTATCCGCTTCAATGAGGTTCTTCCTGTAGGGGAGGGA
ACTTTAGTAATTGCATTCAAGGGAACTCTGAACGACAAGATGCATGGCTTCTACAGAAGT
GTGTATGAACTCAATGGGGAGAAGAAGAACATGGCGGTAACCCAGTTTGAACCTGCTGAC
GCAAGGCGTTGTTTTCCTTGTTGGGATGAGCCCTCTTTTAAGGCTATATTCAAAATTACT
CTAGAAGTTCCGTCTGAGACCGTTGCATTGTCAAACATGCCAGTGGTTGAAGAGAAGGTC
AATGGCCTTATCAAAGCTGTCTATTTTCAAGAAACACCAATAATGTCAACATACCTAGTG
GCTGTTATTGTTGGCATGTTCGACTATGTGGAAGCTTTCACCACTGATGGCACTAGGGTT
CGTGTTTACACTCAAGTTGGCAAGAGTGCCCAGGGAAAGTTTGCACTAGAGGTTGCTGTG
AAGACACTGGTCCTCTTCAAGGAGTATTTTGCTGTGCCATACCCACTCCCAAAAATGGAC
ATGATTGCCATTCCTGATTTTGCCTCTGGAGCAATGGAGAACTATGGCTTGGTTACATAT
CGTGAAACAGCTTTGTTATTTGATGAGAAACACTCTGCAGCTGCGAATAAGCAAAGGGTT
GCAGTTGTGGTAGCCCATGAATTAGCTCACCAGTGGTTTGGAAATCTTGTGACAATGGAG
TGGTGGACACACCTATGGCTTAACGAGGGTTTTGCGACATGGGTCTCCTACTTAGCTGCA
GACAATTTCTTTCCTGAATGGAATGTTTGGACCCAATTTCTTGAGGAATCTACAACAGGT
TTCAAGTTAGATGCCCTTGCAGGGTCACATCCAATTGAGGTCGACGTAAATCACGTTGAT
GAAATAGATGAAATATTTGATGCTATAAGCTACAGGAAAGGAGCTGCTGTTATTCGGATG
CTGCAAAGCTATCTTGGGGCTGAAACTTTTCAGAAATCTCTGGCCGCATACATCGAAAAG
TTCGCATATTCAAATGCCAAGACTGAGGACTTGTGGGCTGCCCTTGAAGAGGGGTCTGGT
GAACCAGTGAAAACATTAATGCATTCATGGACAAAGCAGCAAGGGTACCCTGTTGTTAAT
GTGAAGCTCAAGGATGGAAAGCTAGAGATGGAGCAGACACAGTTCCTATCAAGCGGGGCT
GAAGGAGTTGGGCAATGGGTGGTTCCCATCACACTGTGTTGCTGTTCGTACTCACGTCAA
GAGAAGTTCCTTTTTAATGGAAAGCAAGAGGATTTTAATTTGTCAGGGCTTGTAGAATGT
CAAAAGAAAGAAGACTTCTGGATTAAACTTAATGTCAATCAGACTGGCTTCTATAGAGTG
AGCTATGATGAGGAACTTGCATCTCGACTTAGATATGCAATTGAAGCCAACAAACTGAGT
GCAGCAGACAGATATGGTGTACTTGATGACACATATGCCCTCTGTATGGCTGGCAAACAG
AAGCTAGTCTCCTTATTGCATTTGATTGCTGCGTACAAGGATGAAACCGAGTATACTGTG
CTCGCCCGTGTCATAGATACAAGTCTGAGCATTGTCGAGATGGTGGCTGTTGCTGCTCCT
GAGGGGTTGGGCAAGCTGAAAAAGTTCCTGATTGACTTTCTTGAGCCATTTGCACAGAGA
ATTGGTTGGGATGCTAAAAGCGGTGAGGGTCACTTGGATGCATTATTGAGAGGTACACTT
TTAACTGCTCTGGCAGAACTTGGCCATGAAGCTACAATAAATGAAGCTGTACGCCGATTT
AACATCTTTGTGGAAGATAGAGAAACACCACTACTCCCTCCAGATGTTCGAAAGGCGGCA
TATGTTGCTTTGATGCAGACAGTGAACAAATCAAACAGAGCCGGCTATGAATCACTATTG
AAGATCTATAAAGAAACTGATCTGAGCCAGGAAAAAGTCAGAATTTTAGGTTCTCTAGCA
TCTTGCCCTGA

consensusID : consensus_14541#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence

                              [CAGTATACTCGNCTTNATCCTTGTACGCAGCAATCAAATNCAATAAGGNGACTAGCTTNTNTTTGCCCGNNTCATAGATACAANTCTGAGCATNNTCGAGATAGGTGGCTNTTGCTGCTCCTGAGGGGTTAGGGCAAGCTGNAAAAGTTCCTGATTGNCTTTCTTGAGCCATTTNCACAGAGAATTGGTTNGGATGCTAAAAGCGNTGAGGGTCACTNGGATGCATTATTGAGAGGTACACTTT]

[+] EMBL D43262               [CAGTATACTCGNCTTNATCCTTGTACGCAGCAATCAAATNCAATAAGGNGACTAGCTTNTNTTTGCCCGNNTCATAGATACAANTCTGAGCATNNTCGAGATAGGTGGCTNTTGCTGCTCCTGAGGGGTTAGGGCAAGCTGNAAAAGTTCCTGATTGNCTTTCTTGAGCCATTTNCACAGAGAATTGGTTNGGATGCTAAAAGCGNTGAGGGTCACTNGGATGCATTATTGAGAGGTACACTTT]




>consensus_14541#1
CAGTATACTCGNCTTNATCCTTGTACGCAGCAATCAAATNCAATAAGGNGACTAGCTTNT
NTTTGCCCGNNTCATAGATACAANTCTGAGCATNNTCGAGATAGGTGGCTNTTGCTGCTC
CTGAGGGGTTAGGGCAAGCTGNAAAAGTTCCTGATTGNCTTTCTTGAGCCATTTNCACAG
AGAATTGGTTNGGATGCTAAAAGCGNTGAGGGTCACTNGGATGCATTATTGAGAGGTACA
CTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14541#0      CCGCAAAATCTCACCGAATCTTTCGCCGTCTCCGAGGCTTGCACAACTCTTCTTCCTCAT 60
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      CTTCCGCCGCGGGCGGCGACGGCGGCGGCGGCGGCCATGGCGGCGGCGGAGCAGAGCGCG 120
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GAGCAGTTCAGGGGCCAGGCGAGGCTCCCGGGGTTCGCGGCGCCCCGGCGGTACGACCTG 180
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      CGGCTCGTCCCCGACCTCGACGGGTGCGCCTTCACGGGATCTGTGGACGTCTCCGTCGAC 240
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GTCACGGCGCCCACCAGGTTCCTCGTGCTCAACGCCGCCGAGCTCGAGGTCTCCCCCGGG 300
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GGCGTCCAGTTCAAGCCCCATGGCGCCGAGCAGGAGCTGCACCCAGCGGAGGTTACCAAT 360
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GTGCCAGAGGATGAGATCCTGATTATCCGCTTCAATGAGGTTCTTCCTGTAGGGGAGGGA 420
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      ACTTTAGTAATTGCATTCAAGGGAACTCTGAACGACAAGATGCATGGCTTCTACAGAAGT 480
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GTGTATGAACTCAATGGGGAGAAGAAGAACATGGCGGTAACCCAGTTTGAACCTGCTGAC 540
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GCAAGGCGTTGTTTTCCTTGTTGGGATGAGCCCTCTTTTAAGGCTATATTCAAAATTACT 600
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      CTAGAAGTTCCGTCTGAGACCGTTGCATTGTCAAACATGCCAGTGGTTGAAGAGAAGGTC 660
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      AATGGCCTTATCAAAGCTGTCTATTTTCAAGAAACACCAATAATGTCAACATACCTAGTG 720
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GCTGTTATTGTTGGCATGTTCGACTATGTGGAAGCTTTCACCACTGATGGCACTAGGGTT 780
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      CGTGTTTACACTCAAGTTGGCAAGAGTGCCCAGGGAAAGTTTGCACTAGAGGTTGCTGTG 840
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      AAGACACTGGTCCTCTTCAAGGAGTATTTTGCTGTGCCATACCCACTCCCAAAAATGGAC 900
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      ATGATTGCCATTCCTGATTTTGCCTCTGGAGCAATGGAGAACTATGGCTTGGTTACATAT 960
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      CGTGAAACAGCTTTGTTATTTGATGAGAAACACTCTGCAGCTGCGAATAAGCAAAGGGTT 1020
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GCAGTTGTGGTAGCCCATGAATTAGCTCACCAGTGGTTTGGAAATCTTGTGACAATGGAG 1080
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      TGGTGGACACACCTATGGCTTAACGAGGGTTTTGCGACATGGGTCTCCTACTTAGCTGCA 1140
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GACAATTTCTTTCCTGAATGGAATGTTTGGACCCAATTTCTTGAGGAATCTACAACAGGT 1200
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      TTCAAGTTAGATGCCCTTGCAGGGTCACATCCAATTGAGGTCGACGTAAATCACGTTGAT 1260
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GAAATAGATGAAATATTTGATGCTATAAGCTACAGGAAAGGAGCTGCTGTTATTCGGATG 1320
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      CTGCAAAGCTATCTTGGGGCTGAAACTTTTCAGAAATCTCTGGCCGCATACATCGAAAAG 1380
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      TTCGCATATTCAAATGCCAAGACTGAGGACTTGTGGGCTGCCCTTGAAGAGGGGTCTGGT 1440
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GAACCAGTGAAAACATTAATGCATTCATGGACAAAGCAGCAAGGGTACCCTGTTGTTAAT 1500
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GTGAAGCTCAAGGATGGAAAGCTAGAGATGGAGCAGACACAGTTCCTATCAAGCGGGGCT 1560
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GAAGGAGTTGGGCAATGGGTGGTTCCCATCACACTGTGTTGCTGTTCGTACTCACGTCAA 1620
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GAGAAGTTCCTTTTTAATGGAAAGCAAGAGGATTTTAATTTGTCAGGGCTTGTAGAATGT 1680
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      CAAAAGAAAGAAGACTTCTGGATTAAACTTAATGTCAATCAGACTGGCTTCTATAGAGTG 1740
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      AGCTATGATGAGGAACTTGCATCTCGACTTAGATATGCAATTGAAGCCAACAAACTGAGT 1800
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GCAGCAGACAGATATGGTGTACTTGATGACACATATGCCCTCTGTATGGCTGGCAAACAG 1860
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      AAGCTAGTCTCCTTATTGCATTTGATTGCTGCGTACAAGGATGA--AACCGAGTATACTG 1918
consensus_14541#1      -CAGTATACTCGNCTTNATCCTTGTACGCAGCAATCAAATNCAATAAGGNGACTAGCTTN 59
                           **  ***    *     ***   ** **   ***     *  *   ** **   * 

consensus_14541#0      TGCTCGCCCGTGTCATAGATACAAGTCTGAGCATTGTCGAGAT-GGTGGCTGTTGCTGCT 1977
consensus_14541#1      TNTTTGCCCGNNTCATAGATACAANTCTGAGCATNNTCGAGATAGGTGGCTNTTGCTGCT 119
                       *  * *****  ************ *********  ******* ******* ********

consensus_14541#0      CCTGAGGGGTT-GGGCAAGCTGAAAAAGTTCCTGATTGACTTTCTTGAGCCATTTGCACA 2036
consensus_14541#1      CCTGAGGGGTTAGGGCAAGCTGNAAAAGTTCCTGATTGNCTTTCTTGAGCCATTTNCACA 179
                       *********** ********** *************** **************** ****

consensus_14541#0      GAGAATTGGTTGGGATGCTAAAAGCGGTGAGGGTCACTTGGATGCATTATTGAGAGGTAC 2096
consensus_14541#1      GAGAATTGGTTNGGATGCTAAAAGCGNTGAGGGTCACTNGGATGCATTATTGAGAGGTAC 239
                       *********** ************** *********** *********************

consensus_14541#0      ACTTTTAACTGCTCTGGCAGAACTTGGCCATGAAGCTACAATAAATGAAGCTGTACGCCG 2156
consensus_14541#1      ACTTT------------------------------------------------------- 244
                       *****                                                       

consensus_14541#0      ATTTAACATCTTTGTGGAAGATAGAGAAACACCACTACTCCCTCCAGATGTTCGAAAGGC 2216
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      GGCATATGTTGCTTTGATGCAGACAGTGAACAAATCAAACAGAGCCGGCTATGAATCACT 2276
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      ATTGAAGATCTATAAAGAAACTGATCTGAGCCAGGAAAAAGTCAGAATTTTAGGTTCTCT 2336
consensus_14541#1      ------------------------------------------------------------
                                                                                   

consensus_14541#0      AGCATCTTGCCCTGA 2351
consensus_14541#1      ---------------