These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2591 fasta sequence [GTAAGACGTGAGGGGNGAGATCTGCTTTATGTTGTTGGTAATGTGTAAATTGCACAGTACAGCTATTAGACTGCAATCAGCTAGGGATTCTTCAGCCTGACCAGGGAGGAGCGTGAATCTCCAGAAGTATGGGCACACATTTGTGTTCAGAAGCTTGCTGAGCTGCCCAAAGAGAGTACAACAATGCGACGCATCCTAGATCCAATGCTTTCTTACTTCGATAAAAAGAAGCAATGGGCTCCTCGACAGGGATTAGCTTTGCTTGTTTTGTCTGATATGTCTTATCTTGAAAAAAGTTCAGGCAATGAACAATTGATTTTGACTTCTGTCATCCGGCACCTCGACCACAAAATGTTTTGTATGATCCTCAGATTAAATCTGATATGATCCAGACAGCTACTTTATTGGCACGGCAGCTACGATCACGAGGAATTGCTGCTGAGCTTGTAGTAGCAGGTGACTTGT-CAGACACTTGAGGAA-AACACTAGAG-GCCATGGAGTCAGCCAGTATTGAAGAGCTGAACTTGAATGAATCACTTC-AAATTTCTTGCAGGACTGTCTTCTAGAAGTTGTCACAGGAATTAATGATGTGCGGCCGCTCTATGACATGATGGCAATTACACTGGAGAATTTGCCTTCTATGCCTGTGGTTGCCAGAGCATCGATTGGAAGTTTGCTGATCCTTTCGCACATAATCTCCTTGACATCAATGTCTTTAAACGCTCCTATGCTGTTTCCAGAAGCACTCCTCCAGCAGATACTGAAGTCCATGGTACATCCAGATGTTGACACTCGTGTGGGGGCACACCACATGTTTTCTGCTGTTATTGTTCAAGGACCAAGCCGTCAGAGGAGTGAATCAGACTTTCTATATGAAACAAAAAAATGGCAGTCTCGGACTACATCAGTATTTGCTTCAGCTACTGCTCTACTTGAGAAGTTAAGGAGAGAAAAAGAAAGTTTAGGTTCTGATAAGACAGGAAACATGGATGATGAGAAGGAAAAAAGCATAAGTGAAGAGGAAAATAAACATGTTTGGGCACGTAAAAACTCGGCTTATTTTTCAAAGCTGGTTTTCTCTTTCACTGATCGATATGCAGCACTAACTAGTTCTGCAGAGGAGGCTAATATTGTCATGCTAACTGAAGATCAAAAAAATCAATTGCTCTCCGCGTTTTGGGTACAGGCAATTCAGACAGATAACACTCCTTTTAATTATGAGGCGATTGGTCACTCGTACAGCCTCACGGTTATTTCTTCTCGCCTTAAGGATTCAAGGAACAGTAATAACATTCAGTTTTTTCAGTTGCCGCTGTCCCTTCGTAGTGTTTCCTTAACCTCAAATGGAGTCCTTTCCCCTTCTTGCCAGCGGTCTATTTTTACCTTGGCAACAAGCATGCTAGCTTTTGCTGGGAAAGTCTGTCACATTACTGAATTGTTTGATGTGCTGAGGTGCTTTACATCTTGCAATATGGATCCTTATCTAAGAATTGGTGAAGACTTGCAACTCTATGTAAGGTTGCAATCTGATCTAGGTAACTATGGTTCTGATAGCGATCAAGAAATCGCTAGATCTGTACTTTCTGACTGCAGGACAAAAGTGGGGATTAATGATCAGCGAGTACTTGATGTAGTTGCTTGTGCACTGTGTAATTTAACTGAGATGGACAAGGATGTACTGGTGAAGGAGCTCACAGAAATGTTTACACCTGAAGAGGTGCCCTTGTTTGGGTCAAATTCAGCATTTGACTGGGCCAATTTTCATGTTCAGGCATTTTCTGATGAATCCCTTTCTTTTGATGAGGAGTGTTCAAGAACCTCTTCAGTAGATGGTGGGTTGCATGAGTCACCAATTACAAACACCGGTAGCTCGATATCAAAGACTACGATGCCACAATCTGTTCCTCGTGTCTTAGGTGTTGGCCAGTTGCTTGAATCGGCGTTACATGTAGCCGGCCAAGTTGCGGGAGCATCTGTTTCGACCTCCCCGCTCCCATACGGCACAATGACCAGTCAATGCGAAGCCTTGGGATCAGGCACTAGGAAGAAGCTCTCAAGCTGGCTTGTCAATGGCCATGACTCTACGCCAGACAATCCTGCTCCAAGCCTTCCATCTGCGCAGCATTTCATCATTCCTAAAGTAAATTCATGCGGTTTCGAGAGCAGCATCCGGACGACTTTGGAGCCTTGCTCGGCAGTGAA-GCTCCCACCCGCCAGCCCCTTCGACAACTTCCTGAAGGCTGCATATCGTGCCCAGTAGCAGCCATGACAAGCCTTCGAGATTATGCCTAACCATGTTTAGTAGTGCTAGGATGTAGTACCTGAGCATCAGAACTAGATTATCTTTTGAAAGACTTGGCCGATCTGGCTTATCCTTTATTATCTGTAGCACTGTTAGTTGTAGTAGCTTGTGTATCAATGTATGGCTATGTCTGTGTCCCTCCAGTAAATGACAATCGTATATGTACTATGTAGTATGACCATGTAGCCCACTAGTAAATGTTTGTAGGGTATGTATGACAATGTATGACCATATTGTTTTTTTGAGATGTAGGATTCTATTTCAGACTCGAGTAATCTGTGGGGGACATG] [+] EMBL BI807217 [GTAAGACGTGAGGGGNGAGATCTGCTTTATGTTGTTGGTAATGTGTAAATTGCACAGTACAGCTATTAGACTGCAATCAGCTAGGGATTCTTCAGCCTGACCAGGGAGGAGCGTGAATCTCCAGAAGTATGGGCACACATTTGTGTTCAGAAGCTTGCTGAGCTGCCCAAAGAGAGTACAACAATGCGACGCATCCTAGATCCAATGCTTTCTTACTTCGATAAAAAGAAGCAATGGGCTCCTCGACAGGGATTAGCTTTGCTTGTTTTGTCTGATATGTCTTATCTTGAAAAAAGTTCAGGCAATGAACAATTGATTTTGACTTCTGTCATCCGGCACCTCGACCACAAAATGTTTTGTATGATCCTCAGATTAAATCTGATATGATCCAGACAGCTACTTTATT GCCCGGCAGCTACGATCACGAGGAATTGCTGCTGAGCTTGTAGTAGCAGGTGACTTGT CAGACACTTGAGGAA AACACTAGAG GCCATGGAGTCAGCCAGTATTGAAGAGCTGAACTTGAATGAATCACTTC AAATTTCTTGCAGGACTGTCTTCTAGAAGTTGTCACAGGAATT ] [+] EMBL AK072741 [ ATGATCCTCAGATTAAATCTGATATGATCCAGACAGCTACTTTATTGGCACGGCAGCTACGATCACGAGGAATTGCTGCTGAGCTTGTAGTAGCAGGTGACTTGTGCAGACACTTGAGGAA AACACTAGAG GCCATGGAGTCAGCCAGTATTGAAGAGCTGAACTTGAATGAATCACTTCAAAATTTCTTGCAGGACTGTCTTCTAGAAGTTGTCACAGGAATTAATGATGTGCGGCCGCTCTATGACATGATGGCAATTACACTGGAGAATTTGCCTTCTATGCCTGTGGTTGCCAGAGCATCGATTGGAAGTTTGCTGATCCTTTCGCACATAATCTCCTTGACATCAATGTCTTTAAACGCTCCTATGCTGTTTCCAGAAGCACTCCTCCAGCAGATACTGAAGTCCATGGTACATCCAGATGTTGACACTCGTGTGGGGGCACACCACATGTTTTCTGCTGTTATTGTTCAAGGACCAAGCCGTCAGAGGAGTGAATCAGACTTTCTATATGAAACAAAAAAATGGCAGTCTCGGACTACATCAGTATTTGCTTCAGCTACTGCTCTACTTGAGAAGTTAAGGAGAGAAAAAGAAAGTTTAGGTTCTGATAAGACAGGAAACATGGATGATGAGAAGGAAAAAAGCATAAGTGAAGAGGAAAATAAACATGTTTGGGCACGTAAAAACTCGGCTTATTTTTCAAAGCTGGTTTTCTCTTTCACTGATCGATATGCAGCACTAACTAGTTCTGCAGAGGAGGCTAATATTGTCATGCTAACTGAAGATCAAAAAAATCAATTGCTCTCCGCGTTTTGGGTACAGGCAATTCAGACAGATAACACTCCTTTTAATTATGAGGCGATTGGTCACTCGTACAGCCTCACGGTTATTTCTTCTCGCCTTAAGGATTCAAGGAACAGTAATAACATTCAGTTTTTTCAGTTGCCGCTGTCCCTTCGTAGTGTTTCCTTAACCTCAAATGGAGTCCTTTCCCCTTCTTGCCAGCGGTCTATTTTTACCTTGGCAACAAGCATGCTAGCTTTTGCTGGGAAAGTCTGTCACATTACTGAATTGTTTGATGTGCTGAGGTGCTTTACATCTTGCAATATGGATCCTTATCTAAGAATTGGTGAAGACTTGCAACTCTATGTAAGGTTGCAATCTGATCTAGGTAACTATGGTTCTGATAGCGATCAAGAAATCGCTAGATCTGTACTTTCTGACTGCAGGACAAAAGTGGGGATTAATGATCAGCGAGTACTTGATGTAGTTGCTTGTGCACTGTGTAATTTAACTGAGATGGACAAGGATGTACTGGTGAAGGAGCTCACAGAAATGTTTACACCTGAAGAGGTGCCCTTGTTTGGGTCAAATTCAGCATTTGACTGGGCCAATTTTCATGTTCAGGCATTTTCTGATGAATCCCTTTCTTTTGATGAGGAGTGTTCAAGAACCTCTTCAGTAGATGGTGGGTTGCATGAGTCACCAATTACAAACACCGGTAGCTCGATATCAAAGACTACGATGCCACAATCTGTTCCTCGTGTCTTAGGTGTTGGCCAGTTGCTTGAATCGGCGTTACATGTAGCCGGCCAAGTTGCGGGAGCATCTGTTTCGACCTCCCCGCTCCCATACGGCACAATGACCAGTCAATGCGAAGCCTTGGGATCAGGCACTAGGAAGAAGCTCTCAAGCTGGCTTGTCAATGGCCATGACTCTACGCCAGACAATCCTGCTCCAAGCCTTCCATCTGCGCAGCATTTCATCATTCCTAAAGTAAATTCATGCGGTTTCGAGAGCAGCATCCGGACGACTTTGGAGCCTTGCTCGGCAGTGAA GCTCCCACCCGCCAGCCCCTTCGACAACTTCCTGAAGGCTGCATATCGTGCCCAGTAGCAGCCATGACAAGCCTTCGAGATTATGCCTAACCATGTTTAGTAGTGCTAGGATGTAGTACCTGAGCATCAGAACTAGATTATCTTTTGAAAGACTTGGCCGATCTGGCTTATCCTTTATTATCTGTAGCACTGTTAGTTGTAGTAGCTTGTGTATCAATGTATGGCTATGTCTGTGTCCCTCCAGTAAATGACAATCGTATATGTACTATGTAGTATGACCATGTAGCCCACTAGTAAATGTTTGTAGGGTATGTATGACCATGTATGACCATAT ] [+] EMBL AU164112 [ ATGATCCTCAGATTAAATCTGATATGATCCAGACAGCTACTTTATTGGCACGGCAGCTACGATCACGAGGAATTGCTGCTGAGCTTGTAGTAGCAGGTGACTTGTGCAGACACTTGAGGAA AACACTAGAG GCCATGGAGTCAGCCAGTATTGAAGAGCTGAACTTGAATGAATCACTTCAAAATTTCTTGCAGGACTGTCTTCTAGAAGTTGTCACAGGAATTAATG ] [+] EMBL BI805822 [ CTGCTGAGCTTGTAGTACCAGGTGACTTGT CAGACACTTGAGGAATAACACTAGAGCGCCATGGAGTCAGCCAGTATTGAAGAGCTGAACTTGAATGAATCACTTC AAATTTCTTGCAGGACTGTCTTCTAGAAGTTGTCACAGGAATTAATG ] [+] EMBL CB646895 [ CGGACTCCATCAGTATTTGCTTCAGCTACTGCTCTACTTGAGAAGTTAAGGAGAGAAAAAGAAAGTTTAGGTTCTGATAAGACAGGAAACATGGATGATGAGAAGGAAAAAAGCATAAGTGAAGAGGAAAATAAACATGTTTGGGCACGTAAAAACTCGGCTTATTTTTCAAAGCTGGTTTTCTCTTTCACTGATCGATATGCAGCACTAACTAGTTCTGCAGAGGAGGCTAATATTGTCATGCTAACTGAAGATCAAAAAAATCAATTGCTCTCCGCGTTTTGGGTACAGGCAATTCAGACAGATAACACTCCTTTTAATTATGAGGCGATTGGTCACTCGTACAGCCTCACGGTTATTTCTTCTCGCCTTAAGGATTCAAGGAACAGTAATAACATTCAGTTTTTTCAGTTGCCGCTGTCCCTTCGTAGTGTTTCCTTAACCTCAAATGGAGTCCTTTCCCCTTCTTGCCAGCGGTCTATTTTTACCTTGGCAACAAGCATGCTAGCTTTTGCTGGGAAAGTCTGTCACATTACTGAATTGTTTGATGTGCTGAGGTGCTTTACATCTTGCAATATGGATCCTTATCTAAGAATTGGTGAAGACTTGCAACTCTATGTAAGGTTGCAATCTGATCTAGGTAACTATGGTTCTGATAGCGATCAAGAAATCGCTAGATCTGTACTTTCTGACTGCAGGACAAAAGTGGGGATTAATGATCAGCGAGTACTTGATGTAGTTGCTTGTGCAC ] [+] EMBL AK062228 [ GGGTACAGGCAATTCAGACAGATAACACTCCTTTTAATTATGAGGCGATTGGTCACTCGTACAGCCTCACGGTTATTTCTTCTCGCCTTAAGGATTCAAGGAACAGTAATAACATTCAGTTTTTTCAGTTGCCGCTGTCCCTTCGTAGTGTTTCCTTAACCTCAAATGGAGTCCTTTCCCCTTCTTGCCAGCGGTCTATTTTTACCTTGGCAACAAGCATGCTAGCTTTTGCTGGGAAAGTCTGTCACATTACTGAATTGTTTGATGTGCTGAGGTGCTTTACATCTTGCAATATGGATCCTTATCTAAGAATTGGTGAAGACTTGCAACTCTATGTAAGGTTGCAATCTGATCTAGGTAACTATGGTTCTGATAGCGATCAAGAAATCGCTAGATCTGTACTTTCTGACTGCAGGACAAAAGTGGGGATTAATGATCAGCGAGTACTTGATGTAGTTGCTTGTGCACTGTGTAATTTAACTGAGATGGACAAGGATGTACTGGTGAAGGAGCTCACAGAAATGTTTACACCTGAAGAGGTGCCCTTGTTTGGGTCAAATTCAGCATTTGACTGGGCCAATTTTCATGTTCAGGCATTTTCTGATGAATCCCTTTCTTTTGATGAGGAGTGTTCAAGAACCTCTTCAGTAGATGGTGGGTTGCATGAGTCACCAATTACAAACACCGGTAGCTCGATATCAAAGACTACGATGCCACAATCTGTTCCTCGTGTCTTAGGTGTTGGCCAGTTGCTTGAATCGGCGTTACATGTAGCCGGCCAAGTTGCGGGAGCATCTGTTTCGACCTCCCCGCTCCCATACGGCACAATGACCAGTCAATGCGAAGCCTTGGGATCAGGCACTAGGAAGAAGCTCTCAAGCTGGCTTGTCAATGGCCATGACTCTACGCCAGACAATCCTGCTCCAAGCCTTCCATCTGCGCAGCATTTCATCATTCCTAAAGTAAATTCATGCGGTTTCGAGAGCAGCATCCGGACGACTTTGGAGCCTTGCTCGGCAGTGAA GCTCCCACCCGCCAGCCCCTTCGACAACTTCCTGAAGGCTGCATATCGTGCCCAGTAGCAGCCATGACAAGCCTTCGAGATTATGCCTAACCATGTTTAGTAGTGCTAGGATGTAGTACCTGAGCATCAGAACTAGATTATCTTTTGAAAGACTTGGCCGATCTGGCTTATCCTTTATTATCTGTAGCACTGTTAGTTGTAGTAGCTTGTGTATCAATGTATGGCTATGTCTGTGTCCCTCCAGTAAATGACAATCGTATATGTACTATGTAGTATGACCATGTAGCCCACTAGTAAATGTTTGTAGGGTATGTATGACAATGTATGACCATATTGTTTTTTTGAGATGTAGGATTCTATTTCAGACTCGAGTAATCTGTGGGGGACATG] [+] EMBL AU225716 [ gccgCTTGCAACTCTATGTAAGGTTGCAATCTGATCTAGGTAACTATGGTTCTGATAGCGATCAAGAAATCGCTAGATCTGTACTTTCTGACTGCAGGACAAAAGTGGGGATTAATGATCAGCGAGTACTTGATGTAGTTGCTTGTGCACTGTGTAATTTAACTGAGATGGACAAGGATGTACTGGTGAAGGAGCTCACAGAAATGTTTACACCTGAAGAGGTGCCCTTGTTTGGGTCAAATTCAGCATTTGACTGGGCCAATTTTCATGTTCAGGCATTTTCTGATGAATCCCTTTCTTTTGATGAGGAGTGTTCAAGAACCTCTTCAGTAGATGGTGGGTTGCATGAGTCACCAATTACAAACACCGGTAGCTCGATATCAAAGACTACGATGCCACAATCTGTTCCTCGTGTCTTAGGTGTTGGCC ] [+] EMBL OSC101661 [ GCTAGATCTGTACTTTCTGACTGCAGGACAAAAGTGGGGATTAATGATCAGCGAGTACTTGATGTAGTTGCTTGTGCACTGTGTAATTTAACTGAGATGGACAAGGATGTACTGGTGAAGGAGCTCACAGAAATGTTTACACCTGAAGAGGTGCCCTTGTTTGGGTCAAATTCAGCATTTGACTGGGCCAATTTTCATGTTCAGGCATTTTCTGATGAATCCCTTTCTTTTGATGAGGAGTGTTCAAGAACCTCTTCAGTAGATGGTGGGTTGCATGAGTCACCAATTACAAACACCGGTAGCTCGATATCAAAGACTACGATGCCACANTCTGTTCCTCGTGTCTTAGGNGTTGGCCAGTTGCTTGAATCGGCGTTACATGTAGCCGGCCAAGTTG ] [-] EMBL CB646896 [ TCAGCATTTGATTGGGCCAATTTTCATGTTCAGGCATTTTCTGATGAATCCCTTTCTTTTGATGAGGAGTGTTCAAGAACCTCTTCAGTAGATGGTGGGTTGCATGAGTCACCAATTACAAACACCGGTAGCTCGATATCAAAGACTACGATGCCACAATCTGTTCCTCGTGTCTTAGGTGTTGGCCAGTTGCTTGAATCGGCGTTACATGTAGCCGGCCAAGTTGCGGGAGCATCTGTTTCGACCTCCCCGCTCCCATACGGCACAATGACCAGTCAATGCGAAGCCTTGGGATCAGGCACTAGGAAGAAGCTCTCAAGCTGGCTTGTCAATGGCCATGACTCTACGCCAGACAATCCTGCTCCAAGCCTTCCATCTGCGCAGCATTTCATCATTCCTAAAGTAAATTCATGCGGTTTCGAGAGCAGCATCCGGACGACTTTGGAGCCTTGCTCGGCAGTGAA GCTCCCACCCGCCAGCCCCTTCGACAACTTCCTGAAGGCTGCATATCGTGCCCAGTAGCAGCCATGACAAGCCTTCGAGATTATGCCTAACCATGTTTAGTAGTGCTAGGATGTAGTACCTGAGCATCAGAACTAGATTATCTTTTGAAAGACTTGGCCGATCTGGCTTATCCTTTATTATCTGTAGCACTGTTAGTTGTAGTAGCTTGTGTATCAATGTATGGCTATGTCTGTGTCCCTCCAGTAAATGACAATCGTATATGTACTATGTAGTATGACCATGTAGCCCACTAGTAAATGTTTGTGGGGTATGTATGACAATGTATGACCATATTGTTTTTTTTAAAGGTAGGATTCTATTTCAGggggggg ] [-] EMBL CB655973 [ GTGGGTTGCATGAGTCACCAATTACAAACACCGGTAGCTCGATATCAAAGACTACGATGCCACAATCTGTTCCTCGTGTCTTAGGTGTTGGCCAGTTGCTTGAATCGGCGTTACATGTAGCCGGCCAAGTTGCGGGAGCATCTGTTTCGACCTCCCCGCTCCCATACGGCACAATGACCAGTCAATGCGAAGCCTTGGGATCAGGCACTAGGAAGAAGCTCTCAAGCTGGCTTGTCAATGGCCATGACTCTACGCCAGACAATCCTGCTCCAAGCCTTCCATCTGCGCAGCATTTCATCATTCCTAAAGTAAATTCATGCGGTTTCGAGAGCAGCATCCGGACGACTTTGGAGCCTTGCTCGGCAGTGAA GCTCCCACCCGCCAGCCCCTTCGACAACTTCCTGAAGGCTGCATATCGTGCCCAGTAGCAGCCATGACAAGCCTTCGAGATTATGCCTAACCATGTTTAGTAGTGCTAGGATGTAGTACCTGAGCATCAGAACTAGATTATCTTTTGAAAGACTTGGCCGATCTGGCTTATCCTTTATTATCTGTAGCACTGTTAGTTGTAGTAGCTTGTGTATCAATGTATGGCTATGTCTGTGTCCCTCCAGTAAATGACAATCGTATATGTACTATGTAGTATGACCATGTAGCCCACTAGTAAATGTTTGTAGGGTATGTATGACAATGTATGACCATATGGTTTTTTTGAGATGTAGGA ] [+] EMBL OSS12250A [ TACGATGCCACAATCTGTTCCTCGTGTCTTAGGTGTTGGCCAGTTGCTTGAATCGGCGTTACATGTAGCCGGCCAAGTTGCGGGAG ATCTGTTTCGACCTCCCCGCTCCCATACGGCACAATGACCAGTCAATGCGAAG CTTGGGATCAGGCACTAGGAAGAAGCTCTCAAGCTGGCTTGTCAATGGCCATGACTCTACGCCAGACAATCCTGCTCCAAGCCTTCCATCTGCGCAGATTTTCATCATTCCTAAAGTAAATTCATGCGGTTTCGAGAGCAGCATCCGGCCGNNTTTGGNGCCTTCNTCGGAAGTTAAGGTTCCAACCCGCAAG CCCTTNGGCAAATTTCTTAANGGTTCATAT ] [+] EMBL OSS11831A [ TACGATGCCACAATCTGTTCCTCGTGTCTTAGGTGTTGGCCAGTTGCTTGAATCGGCGTTACATGTAGCCGGCCAAGTTGCGGGAG ATCTGTTTCGACCTCCCCGCTCCCATACGGCACAATGACCAGTCAATGCGAAG CTTGGGATCAGGCACTAGGAAGAAGCTCTCAAGCTGGCTTGTCAATGGCCATGACTCTACGCCAGACAATCCTGCTCCAAGCCTTCCATCTGCGCAGATTTTCATCATTCCTAAAGTAAATTCATGCGGTTTCGAGAGCAGCATCCGGACGGCTTTGGAGCCTTGNTCGGCAGTTAA GGTCCCA ] [+] EMBL CB000798 [ CCCCGCTCCCATACGGCACAATGACCAGTCAATGCGAAGCCTTGGGATCAGGCACTAGGAAGAAGCTCTCAAGCTGGCTTGTCAATGGCCATGACTCTACGCCAGACAATCCTGCTCCAAGCCTTCCATCTGCGCAGCATTTCATCATTCCTAAAGTAAATTCATGCGGTTTCGAGAGCAGCATCCGGACGACTTTGGAGCCTTGCTCGGCAGTGAA GCTCCCACCCGCCAGCCCCTTCGACAACTTCCTGAAGGCTGCATATCGTGCCCAGTAGCAGCCATGACAAGCCTTCGAGATTATGCCTAACCATGTTTAGTAGTGCTAGGATGTAGTACCTGAGCATCAGAACTAGATTATCTTTTGAAAGACTTGGCCGATCTGGCTTATCCTTTATTATCTGTAGCACTGTTAGTTGTAGTAGCTTGTGTATCAATGTATGGCTATGTCTGTGTCCCTCCAGTAAATGACAATCGTATATGTACTATGTAGTATGACCATGTAGCCCACTAGTAAATGTTTGTAGGGTATGTATGACAATGTA ] consensusID : consensus_14549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1010 fasta sequence [CACCCAAATCTTCCTCCCCCTTCCCCTTCAAGGCCTGGGCCTGGGTGCTTCTCCGGGGCGGCACTCTGGACGGCGGCGGCTGCGAAGCGGGAGTGTGGAAGGGTTGAGGTGTGAGAACCAGGTGGTTGCTCCAACCTTTGGGGTTCAAGGAAGATGGGTTTCATGTCAGCGAAGCTCTTTCCTTCGTGTGAGAGTATGTGCGTGTGCTGTCCAGCTCTGCGCCCAAGCTCGCGGCGCCCTGTCAAGCGTTACAAGAAACTGCTTGCCGAGATATTCCCCAAGACGCCTGATGGCCTTCCAAATGAGAGGAAAATCATGAAGTTATGTGAATATGCAGCGAAGAATCCCCTGCGCATTCCTAAGATTGCCAAGTTTCTGGAACAGAGGAGTCACAAGGAGCTACGTTCTGCTCATGTGAACTTTATCAAAATTATCACTGAGGCATACAGCAAGCTACTCTTCATTTGCAAGGAGCAAATGGCATATTTTGCCATTAGCCTGGTGAATGTTCTTACTGAGCTCCTGGAAAGCAAGCAAGAGAACATTCATATTCTTGGATGCCAAACTTTGGCGAAGTTTATTTATAGCCAGGTGGATAACACGTATGCACGGAATATTGAAAGCTTGGTTCGCAAAGTATGTGTGCTCTCACGGCAACAGGGAGTGGAGCACAGTCTTCTCCGGGCAGCAAGCCTTCAGTGCTTATCAGCAATGATCTGGTTCATGAAGGAGCATTCGTACATATTTGTGGATTTTGATGAGATTGTGCAGTCAGTCTTGGAGAATTATAGAGTGGAAGAATCTGCTGCTGGTGACGAAGAAAGACATGCACCGCAGCATAATTGGGTTGATGAAATAGTAAGACGTGAGGGGAGAGCTGGCTTAGGTGGTGGTAATGATGTAAATTGCAACAGTACAGCTATTAGACTTNCGATCACCTAGGGGATTCTTCAGCCCTGACCAGGGAGGAGCGTGAATCTCCAGAAGTATNGGGCACACATTTGTGTTCA] [+] EMBL CB655972 [CACCCAAATCTTCCTCCCCCTTCCCCTTCAAGGCCTGGGCCTGGGTGCTTCTCCGGGGCGGCACTCTGGACGGCGGCGGCTGCGAAGCGGGAGTGTGGAAGGGTTGAGGTGTGAGAACCAGGTGGTTGCTCCAACCTTTGGGGTTCAAGGAAGATGGGTTTCATGTCAGCGAAGCTCTTTCCTTCGTGTGAGAGTATGTGCGTGTGCTGTCCAGCTCTGCGCCCAAGCTCGCGGCGCCCTGTCAAGCGTTACAAGAAACTGCTTGCCGAGATATTCCCCAAGACGCCTGATGGCCTTCCAAATGAGAGGAAAATCATGAAGTTATGTGAATATGCAGCGAAGAATCCCCTGCGCATTCCTAAGATTGCCAAGTTTCTGGAACAGAGGAGTCACAAGGAGCTACGTTCTGCTCATGTGAACTTTATCAAAATTATCACTGAGGCATACAGCAAGCTACTCTTCATTTGCAAGGAGCAAATGGCATATTTTGCCATTAGCCTGGTGAATGTTCTTACTGAGCTCCTGGAAAGCAAGCAAGAGAACATTCATATTCTTGGATGCCAAACTTTGGCGAAGTTTATTTATAGCCAGGTGGATAACACGTATGCACGGAATATTGAAAGCTTGGTTCGCAAAGTATGTGTGCTCTCACGGCAACAGGGAGTGGAGCACAGTCTTCTCCGGGCAGCAAGCCTTCAGTGCTTATCAGCAATGATCTGGTTCATGAAGGAGCATTCGTACATATTTGTGGATTTTGATGAGATTGTGCAGTCAGTCTTGGAGAATTATAGAGTGGAAGAATCTGCTGCTGGTGACGAAGAAAGACATGCAC ] [+] EMBL C73686 [ TATTTATAGCCAGGTGGATAACACGTATGCACGGAATATTGAAAGCTTGGTTCGCAAAGTATGTGTGCTCTCACGGCAACAGGGAGTGGAGCACAGTCTTCTCCGGGCAGCAAGCCTTCAGTGCTTATCAGCAATGATCTGGTTCATGAAGGAGCATTCGTACATATTTGTGGATTTTGATGAGATTGTGCAGTCAGTCTTGGAGAATTATAGAGTGGAAGAATCTGCTGCTGGTGACGAAGAAAGACATGCACCGCAGCATAATTGGGTTGATGAAATAGTAAGACGTGAGGGGAGAGCTGGCTTAGGTGGTGGTAATGATGTAAATTGCAACAGTACAGCTATTAGACTTNCGATCACCTAGGGGATTCTTCAGCCCTGACCAGGGAGGAGCGTGAATCTCCAGAAGTATNGGGCACACATTTGTGTTCA] consensusID : consensus_14549#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 406 fasta sequence [GACTTTGGAGCCTTGCTCGGCAGTGAAGCTCCCACCCGCCAGCCCCTTCGACAACTTCCTGAAGGCTGCATATCGTGCCCAGTAGCAGCCATGACAAGCCTTCGAGATTATGCCTAACCATGTTTAGTAGTGCTAGGATGTAGTACCTGAGCATCAGAACTAGATTATCTTTTGAAAGACTTGGCCGATCTGGCTTATCCTTTATTATCTGTAGCACTGTTAGTTGTAGTAGCTTGTGTATCAATGTATGGCTATGTCTGTGTCCCTCCAGTAAATGACAATCGTATATGTACTATGTAGTATGACCATGTAGCCCACTAGTAAATGTTTGTAGGGTATGTATGACAATGTATGACCATATTGTTTTTTTGAGATGTAGGATTCTATTTCAGACTAAAAAAAAAAA] [+] EMBL AU174638 [GACTTTGGAGCCTTGCTCGGCAGTGAAGCTCCCACCCGCCAGCCCCTTCGACAACTTCCTGAAGGCTGCATATCGTGCCCAGTAGCAGCCATGACAAGCCTTCGAGATTATGCCTAACCATGTTTAGTAGTGCTAGGATGTAGTACCTGAGCATCAGAACTAGATTATCTTTTGAAAGACTTGGCCGATCTGGCTTATCCTTTATTATCTGTAGCACTGTTAGTTGTAGTAGCTTGTGTATCAATGTATGGCTATGTCTGTGTCCCTCCAGTAAATGACAATCGTATATGTACTATGTAGTATGACCATGTAGCCCACTAGTAAATGTTTGTAGGGTATGTATGACAATGTATGACCATATTGTTTTTTTGAGATGTAGGATTCTATTTCAGACTAAAAAAAAAAA] [-] EMBL AU225229 [ CATGACAAGCCTTCGAGATTATGCCTAACCATGTTTAGTAGTGNTAGGATGTAGTACCTGAGCATCAGAACTAGATTATCTTTTGAAAGACTTGGCCGATCTGGCTTATCCTTTATTATCTGTAGCACTGTTAGTTGTAGTAGCTTGTGTATCAATGTATGGNTATGTCTGTGTCCCTCCAGTAAATGACAATCGTATATGTACTATGTAGTATGACCATGTAGCCCANTAGTAAATGTTTGTAGGGTATGTATGACAATGTATGACCATATTGTTTTTTTGAGATGTAGGATTCTATagcggc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14549#0 GTAAGACGTGAGGGGNGAGATCTGCTTTATGTTGTTGGTAATGTGTAAATTGCACAGTAC 60 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 AGCTATTAGACTGCAATCAGCTAGGGATTCTTCAGCCTGACCAGGGAGGAGCGTGAATCT 120 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 CCAGAAGTATGGGCACACATTTGTGTTCAGAAGCTTGCTGAGCTGCCCAAAGAGAGTACA 180 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 ACAATGCGACGCATCCTAGATCCAATGCTTTCTTACTTCGATAAAAAGAAGCAATGGGCT 240 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 CCTCGACAGGGATTAGCTTTGCTTGTTTTGTCTGATATGTCTTATCTTGAAAAAAGTTCA 300 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 GGCAATGAACAATTGATTTTGACTTCTGTCATCCGGCACCTCGACCACAAAATGTTTTGT 360 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 ATGATCCTCAGATTAAATCTGATATGATCCAGACAGCTACTTTATTGGCACGGCAGCTAC 420 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 GATCACGAGGAATTGCTGCTGAGCTTGTAGTAGCAGGTGACTTGTCAGACACTTGAGGAA 480 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 AACACTAGAGGCCATGGAGTCAGCCAGTATTGAAGAGCTGAACTTGAATGAATCACTTCA 540 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 AATTTCTTGCAGGACTGTCTTCTAGAAGTTGTCACAGGAATTAATGATGTGCGGCCGCTC 600 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 TATGACATGATGGCAATTACACTGGAGAATTTGCCTTCTATGCCTGTGGTTGCCAGAGCA 660 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 TCGATTGGAAGTTTGCTGATCCTTTCGCACATAATCTCCTTGACATCAATGTCTTTAAAC 720 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 GCTCCTATGCTGTTTCCAGAAGCACTCCTCCAGCAGATACTGAAGTCCATGGTACATCCA 780 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 GATGTTGACACTCGTGTGGGGGCACACCACATGTTTTCTGCTGTTATTGTTCAAGGACCA 840 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 AGCCGTCAGAGGAGTGAATCAGACTTTCTATATGAAACAAAAAAATGGCAGTCTCGGACT 900 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 ACATCAGTATTTGCTTCAGCTACTGCTCTACTTGAGAAGTTAAGGAGAGAAAAAGAAAGT 960 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 TTAGGTTCTGATAAGACAGGAAACATGGATGATGAGAAGGAAAAAAGCATAAGTGAAGAG 1020 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 GAAAATAAACATGTTTGGGCACGTAAAAACTCGGCTTATTTTTCAAAGCTGGTTTTCTCT 1080 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 TTCACTGATCGATATGCAGCACTAACTAGTTCTGCAGAGGAGGCTAATATTGTCATGCTA 1140 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 ACTGAAGATCAAAAAAATCAATTGCTCTCCGCGTTTTGGGTACAGGCAATTCAGACAGAT 1200 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 AACACTCCTTTTAATTATGAGGCGATTGGTCACTCGTACAGCCTCACGGTTATTTCTTCT 1260 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 CGCCTTAAGGATTCAAGGAACAGTAATAACATTCAGTTTTTTCAGTTGCCGCTGTCCCTT 1320 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 CGTAGTGTTTCCTTAACCTCAAATGGAGTCCTTTCCCCTTCTTGCCAGCGGTCTATTTTT 1380 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 ACCTTGGCAACAAGCATGCTAGCTTTTGCTGGGAAAGTCTGTCACATTACTGAATTGTTT 1440 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 GATGTGCTGAGGTGCTTTACATCTTGCAATATGGATCCTTATCTAAGAATTGGTGAAGAC 1500 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 TTGCAACTCTATGTAAGGTTGCAATCTGATCTAGGTAACTATGGTTCTGATAGCGATCAA 1560 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 ------------------------------------------------------------ consensus_14549#0 GAAATCGCTAGATCTGTACTTTCTGACTGCAGGACAAAAGTGGGGATTAATGATCAGCG- 1619 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 -CACCCAAATCTTCCTCCCCCTTCCCCTTCAAGGCCTGGGCCTGGGTGCTTCTCCGGGGC 59 consensus_14549#0 AGTACTTGATGTAGTTGCTTGTGCACTGTGTAATTTAACTGAGATGGACAAGGATGTACT 1679 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 GGCACTCTGGACGGCGGCGGCTGCGAAGCGGGAGTGTGGAAGGGTTGAGGTGTGAGAACC 119 consensus_14549#0 GGTGAAGGAGCTCACAGAAATGTTTACACCTGAAGAGGTGCCCTTGTTTGGGTCAAATTC 1739 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 AG-GTGGTTGCTCCAACCTTTGGGGTTCAAGGAAGATGGGTTTCATGTCAGCGAAGCTCT 178 consensus_14549#0 AGCATTTGACTGGGCCAATTTTCATGTTCAGGCATTTTCTGA---TGAATCCCTTTCTTT 1796 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 TTCCTTCGTGTGAGAGTATGTGCGTGTGCTGTCCAGCTCTGCGCCCAAGCTCGCGGCGCC 238 consensus_14549#0 TGATGAGGAGTGTTCAAGAACCTCTTCAGTAGATGGTGGGTTGCATGAGTCACCAATTAC 1856 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 CTGTCAAGCGTTACAAGAAACTGCTTGCCGAGATATTCCCCAAGACGCCTGATGGCCTTC 298 consensus_14549#0 AAAC--ACCGGTAGCTCGATATCAAAGACTACGATGCCACAATCTGTTCCTCGTGTCTTA 1914 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 CAAATGAGAGGAAAATCATGAAGTTATGTGAATATGCAGCGAAGAATCCCCTGCGCATTC 358 consensus_14549#0 --GGTGTTGGCCAGTTGCTTGAATCGGCGTTACATGTAGCCGGCCAAGTTGCGGGAGCAT 1972 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 CTAAGATTGCCAAGTTTCTGGAACAGAGGAGTCACAAGG--AGCTACGTTCTGCTCATGT 416 consensus_14549#0 CTGTTTCGACCTCCCCGCTCCCATACGGCACAATGACCAGTCAATGCGAAGCCTTGGGAT 2032 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 GAACTTTATCAAAATTATCACTGAGGCATACAGCAAGC------TACTCTTCATTTGCAA 470 consensus_14549#0 CAGGCACTAGGAAGAAGCTCTCAAGCTGGCTTGTCAATGGCCATGACTCTACGCCAGACA 2092 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 GGAGCAAATGGCATATTTTGCCA--TTAGCCTGGTGAATGTTCTTACTGAGCTCCTGGAA 528 consensus_14549#0 ATCCTGCTCCAAGCCTTCCATCTGCGCAGCATTTCATCATTCCTAAAGTAAATTCAT-GC 2151 consensus_14549#2 ------------------------------------------------------------ consensus_14549#1 AGCAAGCAAGAGAACATTCATATTCTTGGATGCCAAACTTTGGCGAAGTTTATTTATAGC 588 consensus_14549#0 GGTTTCGAGAGCA-GCATCCGGACGACTTTGGAGCCTTGCTCGGCAGTGAA-----GCTC 2205 consensus_14549#2 ------------------------GACTTTGGAGCCTTGCTCGGCAGTGAA-----GCTC 31 consensus_14549#1 CAGGTGGATAACACGTATGCACGGAATATTGAAAGCTTGGTTCGCAAAGTATGTGTGCTC 648 * *** * **** * *** * * **** consensus_14549#0 CCACC-CGCCAGCCCCTTCG--ACAACTTCCTGAAGGCTGCATATC----GTGCCCAGTA 2258 consensus_14549#2 CCACC-CGCCAGCCCCTTCG--ACAACTTCCTGAAGGCTGCATATC----GTGCCCAGTA 84 consensus_14549#1 TCACGGCAACAGGGAGTGGAGCACAGTCTTCTCCGGGCAGCAAGCCTTCAGTGCTTATCA 708 *** * *** * *** * ** *** *** * **** * * consensus_14549#0 GCAGCCATGACAAGCCTTCGAGATTATGCCTAACCATGTTTAGTAGTGCTAGGATGTAGT 2318 consensus_14549#2 GCAGCCATGACAAGCCTTCGAGATTATGCCTAACCATGTTTAGTAGTGCTAGGATGTAGT 144 consensus_14549#1 GCAATGATCTGGTTCATGAAGGAGCATTCGTACATATTTGTGG-ATTTTGATGAGATTGT 767 *** ** * * ** ** * ** ** * * * * * * ** * ** consensus_14549#0 ACC-TGAGCATCAGAACTAGATTATCTTTTGAAAGACTTGGCCGATCTGGCTTATCCTTT 2377 consensus_14549#2 ACC-TGAGCATCAGAACTAGATTATCTTTTGAAAGACTTGGCCGATCTGGCTTATCCTTT 203 consensus_14549#1 GCAGTCAGTCTTGGAG---AATTATAGAGTGGAAGAATCTGCTG--CTGG-TGACGAAGA 821 * * ** * ** ***** ** **** * ** * **** * * consensus_14549#0 ATTATCTGTAGCACTGT-TAGTTGTAGTAGCTTGTGTATCAATGTATGGCTATGTCTGTG 2436 consensus_14549#2 ATTATCTGTAGCACTGT-TAGTTGTAGTAGCTTGTGTATCAATGTATGGCTATGTCTGTG 262 consensus_14549#1 AAGACATGCACCGCAGCATAATTG----GGTTGATGAAATAGTAAGACGTGAGGGGAGAG 877 * * ** * * * * ** *** * * ** * * * * * * * * consensus_14549#0 TCCCTCCAGTAAATGACAATCGTATATGTACTATGTAGTATGACCATGTAGCCCACTAGT 2496 consensus_14549#2 TCCCTCCAGTAAATGACAATCGTATATGTACTATGTAGTATGACCATGTAGCCCACTAGT 322 consensus_14549#1 CTGGCTTAGGTGGTGGTAATGATGTAAATTGCA-ACAGTACAGCTATTAGACTTNCGATC 936 ** ** *** * ** * * **** * ** * * * consensus_14549#0 AAATGTTTG-TAGGGTATGTATGACAATGTATGACCATATTGTTTTTTTGAGATGTAGGA 2555 consensus_14549#2 AAATGTTTG-TAGGGTATGTATGACAATGTATGACCATATTGTTTTTTTGAGATGTAGGA 381 consensus_14549#1 ACCTAGGGGATTCTTCAGCCCTGACCAGGGAGGAGCGTG--AATCTCCAGAAGTATNGGG 994 * * * * * **** * * * ** * * * * ** * * ** consensus_14549#0 TTCTATTTCAGACTCGAGTAATCTGTGGGGGACATG 2591 consensus_14549#2 TTCTATTTCAGACTAAAAAAAAAAA----------- 406 consensus_14549#1 CACACATTTGTGTTCA-------------------- 1010 * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||