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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1180 fasta sequence
[GTACGCAGCAAAACACAATCC-AAAGCGTGTTCATCCAATCATTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGATCAGGAGACGAGCTGATGCTGCTCGGC-AAATGGCCAA-GCCCATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCCTCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACATCGACGAGGCC--TTCCCC-G-ACG-CCGGCGCC-GGCGCCGCCCTGC-TCCCCGCCGACCCCTACG-AGC-GCGCCGTCGCTCGC-TTC-T-GGGTCGCCTACGTCGACGACAAGTTCGTTCCGGCATGGG-TGG-CGACGTTC-AGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGATGAAGCAACTGCTCGCGGCGGTGGAGACGCTGGAGGGAGCCCTGAAGGATTGCTCCAAGGGGAAGCCCTTCTTCGGCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTGGCCTCATCTCGTGGGTGAAAGCGACCGAGGTGCTCGCTGGCTCCAAGATCTTCGACGAGGAGAAGGCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGGCGAGCTCGACGTCGCCGAGAAGGTGTTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGTCTGAATAATGCAAGGAATATTCAATGAAGTCATGAAAAAAAAAAAGTTTATTCAGTAGTTAGGGGATCTTTTTCTTCTGTTGGTGTCTATTAGTTTGTGTTTGCTTAGCTTTATTTATACTATCGTGAACTTTCTATATAAGTTTTTTTCTATGTGAGTTTTAAAATAATTGATTATAACTTTTTAAGTAAAGGCCGGAATGTTTTATTCTATTATTAAAAAAAAAAAAAAA]
[+] EMBL AY271619 [GTACGCAGCAAAACACAATCCAAAAACGTGTTCATCCAATCATTCTCTCTTCCGCTCTCTCACCCCAGCGAGATGGCCGGATCAGGAGACGAGCTGATGCTGCTCGGC AAATGGCCGA GCCCATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCCTCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCGATCATCGTGCAGTACATTGACGAGGCC TTCCCC G ACG CCGGCGCC AGCGCCGCCCTGC TCCCCGCCGACCCCTACG AGC GCGCCGTCGCTCGC TTC T GGGTCGCCTACGTCGACGACAAGTTCGTTCCGGCATGGG TGG CGACTTTC AGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGATGAAGCAACTGCTCGCGGCGGTGGAGACGCTGGAGGGAGCCCTGAAGGATTGCTCCAAGGGGAAGCCCTTCTTCGGCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTGGCCTCATCTCGTGGGTGAAAGCGACCGAGGTGCTCGCTGGCTCCAAGATCTTCGACGAGGAGAAGGCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGGCGAGCTCGACGTCGCCGAGAAGGTGTTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGTCTGAATAATGCAAGGAATATTCAATGAAGTCATGAAGATGCTTGTGTTTATTCAGTAGTTAGGGGATCTTTTTCTTCTGTTGGTGTCTATTAGTTTGTGTTTGCTTAGCTTTATTTATACTATCGTGAACTTTCTATATAAGTTTTTTTCTATGTGAGTTTTAAAATAATTGATTATAACTTTTTAAGTAAAGGCCGGAATGTTTTATTCTATTATTAAAAAAAAAAAAAAA]
[+] EMBL AK103453 [aTACGCAGCAAAACACAATCC AAAGCGTGTTCATCCAATCATTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGATCAGGAGACGAGCTGATGCTGCTCGGC AAATGGCCAA GCCCATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCCTCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACATCGACGAGGCC TTCCCC G ACG CCGGCGCC GGCGCCGCCCTGC TCCCCGCCGACCCCTACG AGC GCGCCGTCGCTCGC TTC T GGGTCGCCTACGTCGACGACAAGTTCGTTCCGGCATGGG TGG CGACGTTC AGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGATGAAGCAACTGCTCGCGGCGGTGGAGACGCTGGAGGGAGCCCTGAAGGATTGCTCCAAGGGGAAGCCCTTCTTCGGCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTGGCCTCATCTCGTGGGTGAAAGCGACCGAGGTGCTCGCTGGCTCCAAGATCTTCGACGAGGAGAAGGCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGGCGAGCTCGACGTCGCCGAGAAGGTGTTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGTCTGAATAATGCAAGGAATATTCAA ]
[+] EMBL AF309378 [ cgACACAATCC AAAGCGTGTTCATCCAATCATTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGATCAGGAGACGAGCTGATGCTGCTCGGC AAATGGCCAA GCCCATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCCTCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACATCGACGAGGCC TTCCCC G ACG CCGGCGCC GGCGCCGCCCTGC TCCCCGCCGACCCCTACG AGC GCGCCGTCGCTCGC TTC T GGGTCGCCTACGTCGACGACAAGTTCGTTCCGGCATGGG TGG CGACGTTC AGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGATGAAGCAACTGCTCGCGGCGGTGGAGACGCTGGAGGGAGCCCTGAAGGATTGCTCCAAGGGGAAGCCCTTCTTCGGCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTGGCCTCATCTCGTGGGTGAAAGCGACCGAGGTGCTCGCTGGCTCCAAGATCTTCGACGAGGAGAAGGCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGGCGAGCTCGACGTCGCCGAGAAGGTGTTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGTCTGAATAATGCAAGGAATATTCAATGAAGTCATGAAAAAAAAAAA ]
[+] EMBL C26141 [ CACAATCC AAAGCGTGTTCATCCAATCATTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGNTCAGGAGACGAGCTGATGCTTGTTGGCAAAATGGCCAN GCCCATTCGTNACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCCTCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACATCGAGGAGGCC TTNCCC G An ]
[+] EMBL OSC104281 [ AATCC AAAGCGTGTTCATCCAATCATTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGATCAGGAGACGAGCTGATGCTGCTCGGC AAATGGCCAA GCCCATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCCTCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACATCGACGAGGCC ]
[+] EMBL AU063089 [ AAAGCGTGTTCATCCAATCATTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGATCAGGAGACGAGCTGATGCTGCTCGGC AAATGGCCAA GCCCATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCCTCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACATCGACGAGGCC TTCCCC G ACG CCGGCGCC GGCGCCGCCCTGC TCCCCGCCGACCCCTACG AGC GCGCCGTCGCTCGC TTC T GGGTCGCCTACGTCGACGACAA ]
[+] EMBL C26329 [ AAAGCGTGTTCATCCAATCATTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGATCAGGAGACGAGCTGATGCTGCTCGGC AAATGGCCAA GCCCATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGG CTCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACATCGACGAGGCC TTCCCC G ACG GCGGCGCCGGGCGCC CCTTGCTTCCCCGCCGACCCCTACG AGC GCGNCGTCG TTGCTTTCTT GGGTCG CTACGTCGACGACAAGTTCGTTTCGGCATGGGTTGG CGACGTTCAAGAGGCAAGACGGAAGAagg ]
[+] EMBL OSS4519A [ AAGCGTGTTCATCCAATCATTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGNTCAGGAGACGAGCTGATGCTGCTCGGC AAATGGCCAA GCCCATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCCTCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTNGTCAATCATCGTGCAGTACATCGACGAGGGC TTCCCC G ANG CCGGCGCC GG GCCGCCCTGC TCCCCGCNGACCCCTACG AGC GCGCCGTCGTTNGT TTC T GGGTCGCCT ]
[+] EMBL C26655 [ CGTGTTCATCCAATCATTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGATCAGGAGACGAGCTGATGCTGCTCGGCAAAATGGCCAAGGCCCATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCCTCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATNATCGTGCAGTACATCGACGAGGCC TTCCCC G ACG CCGGCGCC GGGGNCGCCCTGC TTCCCGCCGACCCCTACG AGC GCGCCGTCGGTCGN TTC T GGG ]
[+] EMBL AU092712 [ GTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACATCGACGAGGCC TTCCCC G ACG CCGGCGCC GGCGCCGCCCTGC TCCCCGCCGACCCCTACG AGC GCGCCGTCGCTCGC TTC T GGGTCGCCTACGTCGACGACAAGTTCGTTCCGGCATGGG TGG CGACGTTC AGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGATGAAGCAACTGCTCGCGGCGGTGGAGACGCTGGAGGGAGCCCTGAAGGATTGCTCCAAGGGGAAGCCCTTCTTCGGCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTGGCCTCATCTCGTGGGTGAAAGCGACCGAGGTGCTCGCTGGCTCCAAGATCTTCGACGAGGAGAAGGCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGGCGAGCTCGACGTCGCCGAGAAGGTGTTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAAAAna ]
[+] EMBL AU092711 [ CCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACATCGACGAGGCC TTCCCC G ACG CCGGCGCC GGCGCCGCCCTGC TCCCCGCCGACCCCTACG AGC GCGCCGTCGCTCGC TTC T GGGTCGCCTACGTCGACGACAAGTTCGTTCCGGCATGGG TGG CGACGTTC AGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGATGAAGCAACTGCTCGCGGCGGTGGAGACGCTGGAGGGAGCCCTGAAGGATTGCTCCAAGGGGAAGCCCTTCTTCGGCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTGGCCTCATCTCGTGGGTGAAAGCGACCGAGGTGCTCGCTGGCTCCAAGATCTTCGACGAGGAGAAGGCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGGCGAGCTCGACGTCGCCGAGAAGGTGTTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAAAAaa ]
[+] EMBL AU092078 [ AGTACATCGACGAGGCN TTCNCC GAACG CCGGCGCCGGGCGCCGCCTTGC TCCCCGCCGACCCCTACG AGCGGCGCCGTCGCTCGC TTC T GGGTCGCCTACGTCGACGACAAGTTCGTTCCGGCATGGG TGG CGACGTTCAAGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGATGAAGCAACTGCTCGCGGCGGTGGAGACGCTGGAGGGAGCCCTGAAGGATTGCTCCAAGGGGAAGCCCTTCTTCGGCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTGGCCTCATCTCGTGGGTGAAAGCGACCGAGGTGCTCGCTGGCTCCAAGATCTTCGACGAGGAGAAGGCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGGCGAGCTCGACGTCGCCGAGAAGGTGTTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGTCTGAATAATGCAAGGAATATTCAATGAAGTCA AAAAAA ]
[+] EMBL AU100755 [ TACATCGACGA GCC TTCCCCNA ACG CCGGCGCC GGCGCCGCCCTGC TCCCCGCCGACCCCTACG AGC GCGCCGTCGCTCGC TTC TGGGGTCGCCTACGTCGACGACAAGTTCGTTCCGGCATGGG TGG CGACGTTC AGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGATGAAGCAACTGCTCGCGGCGGTGGAGACGCTGGAGGGAGCCCTGAAGGATTGCTCCAAGGGGAAGCCCTTCTTCGGCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTGGCCTCATCTCGTGGGTGAAAGCGACCGAGGTGCTCGCTGGCTCCAAGATCTTCGACGAGGAGAAGGCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGGCGAGCTCGACGTCGCCGAGAAGGTGTTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGTCTGAATAATGCAAGGAATATTCAATGAAGTCATGAAAAAAAAAAAa ]
[+] EMBL AU108266 [ CGAAGCCTTTTCCCC GAACGCCCGGCGCC GGCGCCGCCTTCT TCCCCGCCGACCCCTACGAACC GCGCCGTCGCTCGC TTC T GGGTCGCCTACGTCGACGACAAGTTCGTTCCGGCATGGG TGGCCGACGTTC AGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGATGAAGCAACTGCTCGCGGCGGTGGAGACGCTGGAGGGAGCCCTGAAGGATTGCTCCAAGGGGAAGCCCTTCTTCGGCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTGGCCTCATCTCGTGGGTGAAAGCGACCGAGGTGCTCGCTGGCTCCAAGATCTTCGACGAGGAGAAGGCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGGCGAGCTCGACGTCGCCGAGAAGGTGTTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGTCTGAATAATGCAAGGAATATTCAATGAAGTCATGAAAAAAAAAAA ]
consensusID : consensus_14550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[CCCTGAAGGATTGCNCCAAGGGGAANCCCTTCTTCCGCCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTNCCCTCATCTCGTGGTTGAAAGCGACCGAGGTGCTCGCTGGCTCCCAAGATCTTCGACGAGGAGAAGCCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGNCGAGCTCGACGTCNCCGAGAAGGTGTTNCCGGATGTCGACGGGGTGGTCGAGTTCNCTAAGATGAGGCTGGCAGAAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGNAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGTCTGAATAATGCAAGGAATATTCAATGAAGTCATGAAGATGCTTGTCCTCTGTTTATTCAGTAAAAAAAAAAA]
[+] EMBL AU097382 [CCCTGAAGGATTGCNCCAAGGGGAANCCCTTCTTCCGCCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTNCCCTCATCTCGTGGTTGAAAGCGACCGAGGTGCTCGCTGGCTCCCAAGATCTTCGACGAGGAGAAGCCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGNCGAGCTCGACGTCNCCGAGAAGGTGTTNCCGGATGTCGACGGGGTGGTCGAGTTCNCTAAGATGAGGCTGGCAGAAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGNAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGTCTGAATAATGCAAGGAATATTCAATGAAGTCATGAAGATGCTTGTCCTCTGTTTATTCAGTAAAAAAAAAAA]
consensusID : consensus_14550#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[TCGACGTCGCCGAGAAGGTGTTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGTCTGAATAATGCAAGGAATATTCAATGAAGTCATGAAGATGCTTGTCCTCTGTTTATTCAGTAGTTAGGGGATCTTTTTCTTCTGTTGGTGTCTATTAGTTTGTGTTTGCTTAGCTTTGTTTATACTATCGTGAACTTTCTATATAAGTTTTTTTCTGTGTGAGTTCTAAAAA]
[+] EMBL AU181325 [TCGACGTCGCCGAGAAGGTGTTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTATTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGTCTGAATAATGCAAGGAATATTCAATGAAGTCATGAAGATGCTTGTCCTCTGTTTATTCAGTAGTTAGGGGATCTTTTTCTTCTGTTGGTGTCTATTAGTTTGTGTTTGCTTAGCTTTGTTTATACTATCGTGAACTTTCTATATAAGTTTTTTTCTGTGTGAGTTCTAAAAA]
consensusID : consensus_14550#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[TCNATATNCCTAATAGCNGTGGTTCATCCAATCATTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGATCAGGAGACGAGCTGATGCTGCTCGGCAAATGGCCAAGCCCATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCTNCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACATCGACGAGGCC]
[+] EMBL AU063088 [TCNATATNCCTAATAGCNGTGGTTCATCCAATCATTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGATCAGGAGACGAGCTGATGCTGCTCGGCAAATGGCCAAGCCCATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCTNCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACATCGACGAGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14550#1 ------------------------------------------------------------
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 GTACGCAGCAAAACACAATCCAAAGCGTGTTCATCCAATCATTCTCTGTTCCGCTCTCTC 60
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 ------------------------------------------------------------
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 ACCCCAGCGAGATGGCCGGATCAGGAGACGAGCTGATGCTGCTCGGCAAATGGCCAAGCC 120
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 ------------------------------------------------------------
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 CATTCGTCACCAGGGTTGAGCTCGCGCTCGGCCTCAAGGGCCTCAGCTACGAGTACGTCA 180
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 ------------------------------------------------------------
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 AGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGA 240
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 ------------------------------------------------------------
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 TCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGAGTCGTCAATCATCGTGCAGTACA 300
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 ------------------------------------------------------------
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 TCGACGAGGCCTTCCCCGACGCCGGCGCCGGCGCCGCCCTGCTCCCCGCCGACCCCTACG 360
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 ------------------------------------------------------------
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 AGCGCGCCGTCGCTCGCTTCTGGGTCGCCTACGTCGACGACAAGTTCGTTCCGGCATGGG 420
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 ------------------------------------------------------------
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 TGGCGACGTTCAGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGATGAAGCAACTGCTCG 480
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 ------------------------CCCTGAAGGATTGCNCCAAGGGGAANCCCTTCTTCC 36
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 CGGCGGTGGAGACGCTGGAGGGAGCCCTGAAGGATTGCTCCAAGGGGAAGCCCTTCTTCG 540
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 GCCGGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTNCCCTCATCTCGTGGTTGAAA 96
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 GC-GGCGACACAGTCGGGATCGTGGACGTCGCGCTTGGTGGCCTCATCTCGTGGGTGAAA 599
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 GCGACCGAGGTGCTCGCTGGCTCCCAAGATCTTCGACGAGGAGAAGCCCCCTCTTTTGGC 156
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 GCGACCGAGGTGCTCGCTGGCTCC-AAGATCTTCGACGAGGAGAAGGCCCCTCTTTTGGC 658
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 CGCGTGGGCGCAGCGCTTCGNCGAGCTCGACGTCNCCGAGAA-GGTG--TTNCCGGATGT 213
consensus_14550#2 --------------------------TCGACGTCGCCGAGAA-GGTG--TTGCCGGATGT 31
consensus_14550#0 CGCGTGGGCGCAGCGCTTCGGCGAGCTCGACGTCGCCGAGAA-GGTG--TTGCCGGATGT 715
consensus_14550#3 --------------------------TCNATATNCCTAATAGCNGTGGTTCATCCAATCA 34
** * * * * * *** * * **
consensus_14550#1 CGACGGGGTGGTCGAGTTCNCTAAGATGAGGCTGGCAGAAGGCAGCTGCGGCTGCCGCGG 273
consensus_14550#2 CGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGA-GGCAGCTGCGGCTGCCGCGG 90
consensus_14550#0 CGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGA-GGCAGCTGCGGCTGCCGCGG 774
consensus_14550#3 TTCTCTGTTCCGCTCTCTCACCCCAGCGAGATGGCCGGA--TCAGGAGACGA-GCTGATG 91
* * * ** * *** * * ** *** * * ** * *
consensus_14550#1 CGGCTTCAAAAAA-CTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTG 332
consensus_14550#2 CGGCTTCAAAAAAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTG 150
consensus_14550#0 CGGCTTCAAAAAA-CTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTG 833
consensus_14550#3 CTGCTCGGCAAATGGCCAAGCCCATTCGTC-ACCAGGGTTGAGCTCGCGCTCGGCCTCAA 150
* *** *** * ** ** ** * * * * * * *
consensus_14550#1 GGAGNA-AATAATGTGCTTGTTGGA-AAAATTATTTGGGAGAAACTAATGTGCTTGTTGG 390
consensus_14550#2 GGAGAA-AATAATGTGCTTGTTGGA-AAAATTATTTGGGAGAAACTAATGTGCTTGTTGG 208
consensus_14550#0 GGAGAA-AATAATGTGCTTGTTGGA-AAAATTATTTGGGAGAAACTAATGTGCTTGTTGG 891
consensus_14550#3 GGGCTNCAGCTACGAGTACGTCAAGCAGGACCTCGTCAACAAGAGCGAGCTCCTCCTCGC 210
** * * * * ** * * * * * * * ** * *
consensus_14550#1 AAAAGAATAGATTTA---GTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGT 447
consensus_14550#2 AAAAGAATAGATTTA---GTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGT 265
consensus_14550#0 AAAAGAATAGATTTA---GTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTTATGT 948
consensus_14550#3 CTCCAACCCGGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCAAGCCGGTCTGCGA 270
* * * * * *** * ** * * * * * * * *
consensus_14550#1 CTGAATAATG--CAAGGAATAT-TCAATGAAGTCATGAAGATGCTTGTCCTCTGTTTATT 504
consensus_14550#2 CTGAATAATG--CAAGGAATAT-TCAATGAAGTCATGAAGATGCTTGTCCTCTGTTTATT 322
consensus_14550#0 CTGAATAATG--CAAGGAATAT-TCAATGAAGTCATGAAAAAAAAAAA-----GTTTATT 1000
consensus_14550#3 GTCGTCAATCATCGTGCAGTACATCGACGAGGCC-------------------------- 304
* *** * * * ** ** * ** * *
consensus_14550#1 CAGTAAAAAAAAAAA--------------------------------------------- 519
consensus_14550#2 CAGTAGTTAGGGGATCTTTTTCTTCTGTTGGTGTCTATTAGTTTGTGTTTGCTTAGCTTT 382
consensus_14550#0 CAGTAGTTAGGGGATCTTTTTCTTCTGTTGGTGTCTATTAGTTTGTGTTTGCTTAGCTTT 1060
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 ------------------------------------------------------------
consensus_14550#2 GTTTATACTATCGTGAACTTTCTATATAAGTTTTTTTCTGTGTGAGTTCTAAAAA----- 437
consensus_14550#0 ATTTATACTATCGTGAACTTTCTATATAAGTTTTTTTCTATGTGAGTTTTAAAATAATTG 1120
consensus_14550#3 ------------------------------------------------------------
consensus_14550#1 ------------------------------------------------------------
consensus_14550#2 ------------------------------------------------------------
consensus_14550#0 ATTATAACTTTTTAAGTAAAGGCCGGAATGTTTTATTCTATTATTAAAAAAAAAAAAAAA 1180
consensus_14550#3 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||