These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1230 fasta sequence [TCTCTCCTCCCCCACCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT-AAGGCCAAAGGAGCAGACATT-GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG-AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA-AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA-ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA-AATCCAAGCTCTGC-TGCTTCAATGCACTATA-CTATACTACATCACTGCTGTA-TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT-GCAAAAT-GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAAAACATTGAGACCATCTTCATTGTTTGCTCTACGATTGGTAAACTGTGAAAAAAAAAACCCGAAGAAGCAATAAACATAGTTTACGTGTAAAAAA] [+] EMBL AK066172 [TCTCTCCTCCCCCACCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAG ] [+] EMBL CF313515 [ CCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATTGGGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGC ] [+] EMBL AF458088 [ CGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCGCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACGAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAGAGCATTGAGACCATCTTCATTGTTTGCTCTACGATTGGTAAACTGTGAAAAAAAAAACCCGAAGAAGCAATAAACATAGTTTACGTGTAAAAAA] [+] EMBL AK104481 [ CGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGGCGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTA ] [+] EMBL AK104797 [ CGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACT ] [+] EMBL AU184019 [ GCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATG ] [+] EMBL CA753532 [ GCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATN GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATNGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATNTGAAGGTGGGG AAGCTCTCAACTGGCGATNCTCTAGATATGTCT CCCATGACGAGTCAGCAATATTGACCAATGATGCTACAGTCANGGGATATGANGGGAG CGCGGTGGCATATGTNGCTGACATTGTTTC ACAC ] [+] EMBL AB110165 [ CCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAGAGCATT ] [+] EMBL BP184380 [ CCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTTAAAGGCCAAgg ] [+] EMBL C28489 [ CTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGGAAAGCTCTCAACTGGCGATTCTCTAGATATGTCTTCCCAT ] [+] EMBL AU031688 [ canCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTNAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAAATTTGTAGAATATTCTGGCAAAATGGTGCca ] [+] EMBL AU082334 [ AGNTGNGACTNATATTGTTGANGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGACACCTGNNTNCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCCGTGGGNAATGCATATCGGATCTTTGAATNATGAAGCTTANNCACCTGTTCATCA AATCNAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA T ] [+] EMBL AU184048 [ ACAAGGCAGTTACANAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATNAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGN TGCTTCAATGCACTATA CTATACTACATCNCTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTNT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAAAAAAA ] [+] EMBL AU031689 [ ATGCATATCGGATCTTTGANTGATGAAGCTTAGAANCCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATACCTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATNCAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAANCTAAGATAAGTGNTGGGCGGTGGAGTTATTTTCTTAAAAAAA ] [+] EMBL AU029928 [ tcAGAAACCTGNTCATCANATTCCAAGCTCTGCTTGCTTCAATGCACTATA CTATACTACATCACTGCTGTATTGATNTTTCANGGGGANGCGTATACAATTNTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCNAACTAAGATAAGTGGTGGNCGGTGGAGTTATTTTCTTNATNAAA ] consensusID : consensus_14557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [AGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTNTGCAGAACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAATGCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAAAAAAAAAAAA] [+] EMBL AU184020 [AGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTNTGCAGAACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAATGCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAAAAAAAAAAAA] consensusID : consensus_14557#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence [TCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTTTGCAAAATGTGCAGTGTAATGAAACTAAATAAGGGGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTTTTAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF313516 [TCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTTTGCAAAATGTGCAGTGTAATGAAACTAAATAAGGGGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTTTTAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14557#0 TCTCTCCTCCCCCACCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCC 60 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 CCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCC 120 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 ATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAG 180 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 TTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATAC 240 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 CATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTC 300 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 GGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCA 360 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 TTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTTAAGGCCAAAGGAGCA 420 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 GACATTGGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATC 480 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 CCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTG 540 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 AAGGAACTCAATTTGAAGGTTGGGAAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCC 600 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 CATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCG 660 consensus_14557#1 -------AGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCG 53 consensus_14557#2 ----------------------TCACTGCTG-TATGATTTTTCATGGGGATGCGTATACA 37 ** ** ** ** * ** *** * * consensus_14557#0 GTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGAT 720 consensus_14557#1 GTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGAT 113 consensus_14557#2 ATT-TTTAGGTTCCCCTGAGGCCCTGATCCCCCGTA---TGTACAAAATTCTTGGCAATT 93 * ** *** * * * * * * ** * * * * *** ** * * consensus_14557#0 ATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGAACCTGGTTGCTGTGACA 780 consensus_14557#1 ATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTNTGCAGAACCTGGTTGCTGTGACA 173 consensus_14557#2 ACT-TGGATCAATAGCGTGGAATTTTGTAGAATATTTTGCAAAATGTG--CAGTGTAATG 150 * * * *** ** ** ** * ** **** ** ** *** * consensus_14557#0 GCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCG 840 consensus_14557#1 GCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCG 233 consensus_14557#2 AAA---CTAAATAAGGGGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGA-GTTA 206 * ** * **** * * * * * ***** ** * * consensus_14557#0 GATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAAT 900 consensus_14557#1 GATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAAT 293 consensus_14557#2 TTTTTTTAAAAAAAAAAAAAAAAAAAAA-------------------------------- 234 * *** ** * ** * *** consensus_14557#0 GCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTT 960 consensus_14557#1 GCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTT 353 consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 TAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATC 1020 consensus_14557#1 TAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATC 413 consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 AATAGCGTGGAATTTTGTAGAATATTCTGCAAAATGTGCAGTGTAATGAAACTAAATAAG 1080 consensus_14557#1 AAAAAAAAAAAA------------------------------------------------ 425 consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 GTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAAAACA 1140 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 TTGAGACCATCTTCATTGTTTGCTCTACGATTGGTAAACTGTGAAAAAAAAAACCCGAAG 1200 consensus_14557#1 ------------------------------------------------------------ consensus_14557#2 ------------------------------------------------------------ consensus_14557#0 AAGCAATAAACATAGTTTACGTGTAAAAAA 1230 consensus_14557#1 ------------------------------ consensus_14557#2 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||