These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1323 fasta sequence [CTGTCTGTCAAAGACAGGACGCAGCCGCAGTGCCCCCC----TCTCTCTCTCTCTCTCTCTCTCTTCTCCGGCTCCGGCGCCGCCTCCCCTCGTTTTCC--GAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT-GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC-TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG-AATACTTGGAG-TGGGCCCAGCT-AAGTCACACGATG-AAAGTTTATCTGCCTGAATGTAATC-T-GCCAAAGGACTTC-TGGAAGAA-TGAATTAAA-GGATTTTTCTAACAAAAGCGGAGCTG-AAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA-ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA-AGTGCTCTAGAA-AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT-GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCTAACAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCCTGCAGCAGCAGTTCTCTCCAAATCCAGTTTCCTGCTCCTCTTGTAACTCCTTTGAGCAGCATTCACTTATTAGTTGCCAACAACAATTCCCGGCGGTATCATTTGATAAAACCAATTTGCACA] [+] EMBL AK071448 [CTGTCTGTCAAAGACAGGACGCAGCCGCAGTGCCCCCC TCTCTCTCTCTCTCTCTCTCTCTTCTCTGGCTCCGGCGCCGCCTCCCCTCGTTTTCCGAGAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGTCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGGCGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCTAACAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCCTGCAGCAGCAGTTCTCTCCAAATCCAGTTTCCTG ] [+] EMBL CB666678 [ GTCAAAGCCTGGACTCAGCCGCAGTGCCCCCCTCTTTCTCTCTCTCTCTCTCTCTCTCTTCTCCGGCTCCGGCGCCGCCTCCCCTCGTTTTCC GAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGGCAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA A ] [+] EMBL AK103950 [ TCTCTCTCTTCTCCGGCTCCGGCGCCGCCTCCCCTCGTTTTCC GAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGTCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGT ] [+] EMBL CA753796 [ TCTCCGGCTCCGGCGCCGCCTCCCCTCGTTTTCC GAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAATGGATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCANACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCT ] [+] EMBL AF280060 [ cgctGGCTCCGGCGCCGCCTCCCCTCGTTTTCCGAGAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGA CTGAAAGGGAGCAGGAGTGCTGAAAGTGGTCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAAaaaa ] [+] EMBL OSS1091A [ GCGCCGCCTCCCCTCGTTTTCCGAGAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGC ] [+] EMBL AU070393 [ GCCGCCTCCCCTCGTTTTCCGAGAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGTCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGG ] [+] EMBL AU064485 [ ggcnCGCCTCCCCTCGTTTTCC GAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTGAAATACTTGGAGTTGGGCCCAGCTAAAGTCACACGATGAAAAGTTTATCTGCCTGAATGTAATC TNNCCAAAGGACTTCTTNGAAGAATTGAATTAAA ] [+] EMBL AU064486 [ ggcaCGCCTCCCCTCGTTTTCC GAGAGANAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGANCTAAGCAGCTTGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTN AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATCTT GCCAAAGGACTTC TGGAAGAA TGAATTAAAGGGATTTTTCTAACAAAAGCGGA ] [+] EMBL CB674469 [ AGAGAGACGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTG ] [-] EMBL CB674470 [ TGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCTAACAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCCT GCAGCAGTTCTCTCCAAATCCAGTTTCCTGCTCCTCTTGTAACTCCTTTGAGCAGCATTCACTTATTAGTTGCCAACAACAATTCCCGGCGGTATCATTTGATAAAACCAATTTGCACA] [+] EMBL BQ908249 [ AGGAGAATANATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACATGAGGAGGCCACCATCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACNACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCACAGTGCTCTAGAANAACGTCCAGCTAGACCGGAAAGCTCGCCATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGATCGGGTCCCATTCACCATCGCGCTGCTTGGACCCCCTTGGGCCNTTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACcaaaaa ] [+] EMBL AU174194 [ TTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAAaaaa ] [-] EMBL CB674466 [ CCGAAGAGGGGGGTTTTCGGCTTCCAATGCAAGGAAGGATGAATACACCTGGAGATATGATGCTGATGATATCTGTGAAGAAGTGTTGCGAGCATCA AGTGCTGTAGAA AACGTCCAGCTAGACCGGAAAGCTCGC ] [+] EMBL AU030737 [ gnAGGATGAATACNACTGGATATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGgaccaanaa ] consensusID : consensus_14564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [ACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTNCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCNCAGTGTTGATCATGCCTACTGTACNCCTAGCTNATTTGTTTATGCNCCATATATGGGATTTGATTTCTGCTGGANAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCTAANAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCCTGCAGCANTTNNCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094765 [ACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTNCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCNCAGTGTTGATCATGCCTACTGTACNCCTAGCTNATTTGTTTATGCNCCATATATGGGATTTGATTTCTGCTGGANAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCTAANAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCCTGCAGCANTTNNCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14564#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [GCGACGGTGCTGAGTAAAATCGGAAGGTGGGATGGGTCCAATTCNCCATTGCGCTGCTTGGNCCCCCTTGGGCCNTTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCNCCATATATGGGATTTGATTTCTGCTGGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097320 [GCGACGGTGCTGAGTAAAATCGGAAGGTGGGATGGGTCCAATTCNCCATTGCGCTGCTTGGNCCCCCTTGGGCCNTTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCNCCATATATGGGATTTGATTTCTGCTGGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14564#0 CTGTCTGTCAAAGACAGGACGCAGCCGCAGTGCCCCCCTCTCTCTCTCTCTCTCTCTCTC 60 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 TTCTCCGGCTCCGGCGCCGCCTCCCCTCGTTTTCCGAGAGAGAGAGAGAGAGAGGCAGGC 120 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 GGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCG 180 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 CACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTT 240 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 CGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAATGATGATGGTGGGAATCCCGCTTT 300 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 GCTTGGTAGCTGCAATGACCGAGCTAAGCAGCTGCATGCTTCACCATCAGGTAGGTTATT 360 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 AACAGCACTTGTAAGTGAATACTTGGAGTGGGCCCAGCTAAGTCACACGATGAAAGTTTA 420 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 TCTGCCTGAATGTAATCTGCCAAAGGACTTCTGGAAGAATGAATTAAAGGATTTTTCTAA 480 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 CAAAAGCGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCT 540 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 TGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAG 600 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 AATAATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCC 660 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 ACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACA 720 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 GATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTG 780 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 GAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCAAGTGCTCTAGAAAA 840 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 CGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGG 900 consensus_14564#1 ------------------------------------------------------------ consensus_14564#2 -----------------------------------------------------GCGACGG 7 consensus_14564#0 TGCTGAGTAAAATCGGAAGGTGGGATGGGTCCAATTCACCATTGCGCTGCTTGGACCCCC 960 consensus_14564#1 ------------------------------------------------------ACCCCC 6 consensus_14564#2 TGCTGAGTAAAATCGGAAGGTGGGATGGGTCCAATTCNCCATTGCGCTGCTTGGNCCCCC 67 ***** consensus_14564#0 TTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATG 1020 consensus_14564#1 TTGGGCCATTTGTATCGTTTTGGTTGCTNCGGTGGGATTGTGCGCTTGCGTAGAAGAATG 66 consensus_14564#2 TTGGGCCNTTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATG 127 ******* ******************** ******************************* consensus_14564#0 CTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGA 1080 consensus_14564#1 CNCAGTGTTGATCATGCCTACTGTACNCCTAGCTNATTTGTTTATGCNCCATATATGGGA 126 consensus_14564#2 CTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCNCCATATATGGGA 187 * ************************ ******* ************ ************ consensus_14564#0 TTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCT 1140 consensus_14564#1 TTTGATTTCTGCTGGANAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCT 186 consensus_14564#2 TTTGATTTCTGCTGGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 247 *************** ** * ** * * consensus_14564#0 AACAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCC 1200 consensus_14564#1 AANAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCC 246 consensus_14564#2 AAAAAAAAAA-------------------------------------------------- 257 ** *** consensus_14564#0 TGCAGCAGCAGTTCTCTCCAAATCCAGTTTCCTGCTCCTCTTGTAACTCCTTTGAGCAGC 1260 consensus_14564#1 TGCAGCAN---TTNNCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 303 consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 ATTCACTTATTAGTTGCCAACAACAATTCCCGGCGGTATCATTTGATAAAACCAATTTGC 1320 consensus_14564#1 AAAAAAAA---------------------------------------------------- 311 consensus_14564#2 ------------------------------------------------------------ consensus_14564#0 ACA 1323 consensus_14564#1 --- consensus_14564#2 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||