|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1741 fasta sequence
[TCCTTGCCCCCCTCCCCCTCTCTCTCCCCAGAGGAGCAGCAAGGTCTCTCTCCTCCTCGATCTGCCGCAGGGGGTCCCCTCGATGGCGACGCCTCGCTCCCCGAGCACCCGCGGCGACGCGCTCCTTGACTCGGCGCCCCTGCTCGGCGGGGGCGGCGGCGGCGGCGGCGGCCGGCGCCGAGGGGGCGCGCTCCGCCGGCCGTCGCTCCGCGGCGCGGCGCGGCTGCTGCGGCGCGGGGGGCGGCGGGCGATGCGGGAGCCGTCGGTGCTGGTGCGGGAGGCGGCCGCGGAGCACCTCGAGGAGCGGCAGGCGGACTGGGCCTACTCCCGCCCCGTCGTGGCGCTCGACCTGCTCTGGAACCTCGCTTTCATCACCGTCGCCGCCG-TCGTGCTCGTGCTCAGCCGTGGCGAGGACTCGCCCATGCCGCTCCGGACCTGGGTCGCCGGCTACGCCCTGCAGTGCGTCGTCCACATGGTCTGCGTCGCCATCGAGTACCGGATGCGCCGGGGGCAGCGTGACAGGGCCCCGGCGTCCGCCGACGAGGAAAGGGGAAGTGACGGGTCGTCTTCATCTAGCGATGATGATGTCACGGAGGACGATCGCCGTGGTAGCTGCACCGATTGCGTCAGTATTGCAAAGCACCTGGAGTCAGCTAATACAATGTTCTCCTTCATATGGTGGATAATTGGATTTTATTGGATATCTGCTGGGGGTGAGGATGTTATCCGTGATGCACCTCAGCTTTACTGG-CTTTGCATAGTCTTTCT-GGCATTTGACGTGTTCTTT-GTTGTATTCT-GTGTTGCTCT-GGCTTGCATCATT-GGTATTGCTGTATGTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGGAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGGAGAACAGATGAACCTGAAAAACAAACTGCTGATGAGACAGGACCTTTTGGTGGAATAATGACAGAGTGTGGCACCAATCAACCTATTGAGAAAGTACTCGCACCTGAAGATGCGGAGTGTTGCATTTGCCTTTCGGCATATGATGATGGTGCAGAGCTGCGTGAACTTCCTTGTGGGCACCATTTCCACTGTGCCTGCATTGATAAATGGCTGCATATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGAAAAGTGGCAGTAGCAGTGGAAGTGAAGAAGTATGATTGTGTGAATATCCTCCGGTCGAGAACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACCTGACCAGTGTAAATTTTGTATCCAAAATGTGTGATTAGCGTCATATATGTACTTGAAGTGACTCAAGACTGCTGTTCATATCCACATACATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATACATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTTCCTGCTTGTGTTAGCATGGTTTGTGCTTATGCTCCTGCCTTGGTCATTGGTTCAGCACAAAAACTGTTGTAAATGGGCTATCGGTCCTGTTGAATTGTCAGGTACAAACGAAATGCGTCCTGCTTATGATTCATCTCTTGTACTCTCGAAGTCCTACAGCCAGTTCTTCCGAACTGAAGCATTTTACCGAGCTGGGAGTCATAAAAGATGTTTTTGATCGGTCTGTTGTTGAACTGATAAGGTAATAAAATATTTGAAATCTGA]
[+] EMBL CB665891 [TCCTTGCCCCCCTCCCCCTCTCTCTCCCCAGAGGAGCAGCAAGGTCTCTCTCCTCCTCGATCTGCCGCAGGGGGTCCCCTCGATGGCGACGCCTCGCTCCCCGAGCACCCGCGGCGACGCGCTCCTTGACTCGGCGCCCCTGCTCGGCGGGGGCGGCGGCGGCGGCGGCGGCCGGCGCCGAGGGGGCGCGCTCCGCCGGCCGTCGCTCCGCGGCGCGGCGCGGCTGCTGCGGCGCGGGGGGCGGCGGGCGATGCCGGAGCCGTCGGTGCTGGTGC ]
[+] EMBL CB665889 [TCCTTGCCCCCCTCCCCCTCTCTCTCCCCAGAGGAGCAGCAAGGTCTCTCTCCTCCTCGATCTGCCGCAGGGGGTCCCCTCGATGGCGACGCCTCGCTCCCCGAGCACCCGCGGCGACGCGCTCCTTGACTCGGCGCCCCTGCTCGGCGGGGGCGGCGGCGGCGGCGGCGGCCGGCGCCGAGGGGGCGCGCTCCGCCGGCCGTCGCTCCGCGGCGCGGCGCGGCTGCTGCGGCGCGGGGGGCGGCGGGCGATGCGGGAGCCGTCGGTGCTGGTGCGGGAGGCGGCCGCGGAGCACCTCAAGGAGCGGCAGGCGGACTGGGCCTACTCCCGCCCCGTCGTGGCGCTCGACCTGCTCTGGAACCTCGCTTTC TCACCGTCCCCGCCGTTCGTGCTCGAGCTCAACCG ]
[+] EMBL CB659619 [ cCATCAAGGTCTCTCTCCTCCTCGATCTGCCGCAGGGGGTCCCCTCGATGGCGACGCCTCGCTCCCCGAGCACCCGCGGCGACGCGCTCCTTGACTCGGCGCCCCTGCTCGGCGGGGGCGGCGGCGGCGGCGGCGGCCGGCGCCGAGGGGGCGCGCTCCGCCGGCCGTCGCTCCGCGGCGCGGCGCGGCTGCTGCGGCGCGGGGGGCGGCGGGCGATGCGGGAGCCGTCGGTGCTGGTGCGGGAGGCGGCCGCGGAGCACCTCGAGGAGCGGCAGGCGGACTGGGCCTACTCCCGCCCCGACGTGGCGCTCGACCTGCTCTGGAACCTCGCTTTCATCACCGTCGCCGCCG TCGTGCTCGTGCTCAGCCGTGGCGAGGACTCGCCCATGCCGCTCCGGACCTGGGTCGCCGGCTACGCCCTGCAGTGCGTCGTCCACATGGTCTGCGTCTCCATCGAGTACCGGATGCGCCGGGGGCAGCGTGACAGGGCCCCGGCGTCCGCCGACGAGGAAAGGGGAAGTGACGGGTCGTCTTCATCTAGCGATGATGATGTCACGGAGGACGATCGCCGTGGTAGCTGCACCGATTGCGTCAGTATTGCAAAGCACCTGGAGTCAGCTAATACAATGTTCTCCTTCATATGGTGGATAATTGGATTTTATTGGATATCTGCTGG ]
[+] EMBL CA753485 [ TCGCTCCGCGGCGCGGCGCGGCTGCTGCGGCGCGGGGGGCGGCGGGCGATGCGGGAGCCGTCGGTGCTGGTGCGGGAGGCGGCCGCGGAGCACCTCGAGGAGCGGCAGGCGGACTGGGCCTACTCCCGCCCCGTCGTGGCGCTCGACCTGCTCTGGAACCTCGCTTTCATCACCGTCGCCGCCG TCGTGCTCGTGCTCAGCCGTGGCGAGGACTCGCCCATGCCGCTCCGGACCTGGGTCGCCGGCTACGCCCTGCAGTGCGTCGTCCACATGGTCTGCGTCGCCATCGAGTACCGGATGCGCCGGGGGCAGCGTGACAGGGCCCCGGCGTCCGCCGACGAGGAAAGGGGAAGTGACGGGTCGTCTTCATCTAGCGATGATGATGTCACGGAGGACGATCGCCGTGGTAGCTGCACCGATTGCGTCAGTATTGCAAAGCACCTGGAGTCAGCTAATACAATGTTCTCCTTCATATGGTGGATAATNGGATTTTATTGGATATCTGCTGGGGGTGAGGATGTNATCCGTGATGCCCCTCAGCTTTACTGGCCTTTGCATATTCTTTCTGGGCATTGGACGTGTTCTTTGGTTGTATTCTGGTGTTGCTCTGGGCTTGCATTATTGGGTATTGCT ]
[+] EMBL CB621417 [ CGGNGCGGGGGGCGGCGGGCGATGCGGGAGCCGTCGGTGCTGGTGCCGGAGGCGGCCGCGGAGCACCTCGAGGAGCGGCAGGCGGACTGGGCCTACTCCCGCCCCGTCGTGGCGCTCGACCTGCTCTGGAACCTCGCTTTCATCACCGTCGCCGCCG TCGTGCTCGTGCTCAGCCGCGGCGAGGACTCGCCCATGCCGCTCCGGACCTGGGTCGCCGGCTACGCCCTGCAGTGCGTCGTCCACATGGTCTGCGTCGCCATCGAGTACCGGATGCGCCGGGGGCAGCGTGACAGGGCCCCGGCGTCCGCCGACGAGGAAAGGGGAAGTGACGGGTCGTCTTCATCTAGCGATGATGATGTCACGGAGGACGATCGCCGTGGTAGCTGCACCGATTGCGTCAGTATTGCAAAGCACCTGGAGTCAGCTAATACAATGTTCTCCTTCATATGGTGGATAATTGGATTTTATTGGATATCTGCTGGGGGTGAGGATGTTATCCGTGATGCACCTCAGCTTTACTGG CTTTGCATAGTCTTTCT GGCATTTGACGTGTTCTTT GTTGTATTCT GTGGTGCTCT GGCTTGCATCATT GGTATTGCTGGATGTTGCTGCCTACCTTG ]
[+] EMBL AK070267 [ GCGGACTGGGCCTACTCCCGCCCCGTCGTGGCGCTCGACCTGCTCTGGAACCTCGCTTTCATCACCGTCGCCGCCG TCGTGCTCGTGCTCAGCCGTGGCGAGGACTCGCCCATGCCGCTCCGGACCTGGGTCGCCGGCTACGCCCTGCAGTGCGTCGTCCACATGGTCTGCGTCGCCATCGAGTACCGGATGCGCCGGGGGCAGCGTGACAGGGCCCCGGCGTCCGCCGACGAGGAAAGGGGAAGTGACGGGTCGTCTTCATCTAGCGATGATGATGTCACGGAGGACGATCGCCGTGGTAGCTGCACCGATTGCGTCAGTATTGCAAAGCACCTGGAGTCAGCTAATACAATGTTCTCCTTCATATGGTGGATAATTGGATTTTATTGGATATCTGCTGGGGGTGAGGATGTTATCCGTGATGCACCTCAGCTTTACTGG CTTTGCATAGTCTTTCT GGCATTTGACGTGTTCTTT GTTGTATTCT GTGTTGCTCT GGCTTGCATCATT GGTATTGCTGTATGTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGGAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGGAGAACAGATGAACCTGAAAAACAAACTGCTGATGAGACAGGACCTTTTGGTGGAATAATGACAGAGTGTGGCACCAATCAACCTATTGAGAAAGTACTCGCACCTGAAGATGCGGAGTGTTGCATTTGCCTTTCGGCATATGATGATGGTGCAGAGCTGCGTGAACTTCCTTGTGGGCACCATTTCCACTGTGCCTGCATTGATAAATGGCTGCATATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGAAAAGTGGCAGTAGCAGTGGAAGTGAAGAAGTATGATTGTGTGAATATCCTCCGGTCGAGAACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACCTGACCAGTGTAAATTTTGTATCCAAAATGTGTGATTAGCGTCATATATGTACTTGAAGTGACTCAAGACTGCTGTTCATATCCACATACATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATACATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTTCCTGCTTGTGTTAGCATGGTTTGTGCTTATGCTCCTGCCTTGGTCATTGGTTCAGCACAAAAACTGTTGTAAATGGGCTATCGGTCCTGTTGAATTGTCAGGTACAAACGAAATGCGTCCTGC ]
[+] EMBL AY224421 [ GTCGCCATCGAGTACCGGATGCGCCGGGGGCAGCGTGACAGGGCCCCGGCGTCCGCCGACGAGGAAAGGGGAAGTGACGGGTCGTCTTCATCTAGCGATGATGATGTCACGGAGGACGATCGCCGTGGTAGCTGCACCGATTGCGTCAGTATTGCAAAGCACCTGGAGTCAGCTAATACAATGTTCTCCTTCATATGGTGGATAATTGGATTTTATTGGATATCTGCTGGGGGTGAGGATGTTATCCGTGATGCACCTCAGCTTTACTGG CTTTGCATAGTCTTTCT GGCATTTGACGTGTTCTTT GTTGTATTCT GTGTTGCTCT GGCTTGCATCATT GGTATTGCTGTATGTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGGAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGGAGAACAGATGAACCTGAAAAACAAACTGCTGATGAGACAGGACCTTTTGGTGGAATAATGACAGAGTGTGGCACCAATCAACCTATTGAGAAAGTACTCGCACCTGAAGATGCGGAGTGTTGCATTTGCCTTTCGGCATATGATGATGGTGCAGAGCTGCGTGAACTTCCTTGTGGGCACCATTTCCACTGTGCCTGCATTGATAAATGGCTGCATATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGAAAAGTGGCAGTAGCAGTGGAAGTGA ]
[+] EMBL CA999983 [ CGTCAGTATTGCAAAGCACCTGGACTTAGCTAATACAATGTTCTCCTTCATATGGTGGATAATTGGATTTTATTGGATATCTGCTGGGGGTGAGGATGTTATCCGTGATGCACCTCAGCTTTACTGG CTTTGCATAGTCTTTCT GGCATTTGACGTGTTCTTT GTTGTATTCT GTGTTGCTCT GGCTTGCATCATT GGTATTGCTGTATGTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGGAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGGAGAACAGATGAACCTGAAAAACAAACTGCTGATGAGACAGGACCTTTTGGTGGAATAATGACAGAGTGTGGCACCAATCAACCTATTGAGAAAGTACTCGCACCTGAAGATGCGGAGTGTTGCATTTGCCTTTCGGCATATGATGATGGTGCAGAGCTGCGTGAACTTCCTTGTGGGCACCATTTCCACTGTGCCTGCATTGATAAATGGCTGCATATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGAAAAGTGGCAGTAGCAGTGGAAGTGAAGAAGTATGATTGTGTGAATATCCTCCGGTCGAGAACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACCTGACCAGTGTAA ]
[-] EMBL CB659620 [ AGCTATTCTCTATGCGGTTTCTGATCAGGAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGGAGAACAGATGAACCTGAAAAACAAACTGCTGATGAGACAGGACCTTTTGGTGGAATAATGACAGAGTGTGGCACCAATCAACCTATTGAGAAAGTACTCGCACCTGAAGATGCGGAGTGTTGCATTTGCCTTTCGGCATATGATGATGGTGCAGAGCTGCGTGAACTTCCTTGTGGGCACCATTTCCACTGTGCCTGCATTGATAAATGGCTGCATATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGAAAAGTGGCAGTAGCAGTGGAAGTGAAGAAGTATGATTGTGTGAATATCCTCCGGTCGAGAACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACCTGACCAGTGTAAATTTTGTATCCAAAATGTGTGATTAGCGTCATATATGTACTTGAAGTGATTCAAGACTGCTGTTCATATCCACATACATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATACATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTTCCTGCTTGTGTTAGCATGGTTTGTGCTTATGCTCCTGCCTTGGTCATTGGTTCAGCACAAAAACTGTTGTAAATGGGCTATCGGTCCTGTTGAATTATGAGGTACAAACGAAATGCGTCCTGCTTATGATT ]
[-] EMBL CB646522 [ GATGATATTCGCCAAATTCCAAGATACAAATTTCGGAGAACAGATGAACCTGAAAAACAAACTGCTGATGAGACAGGACCTTTTGGTGGAATAATGACAGAGTGTGGCACCAATCAACCTATTGAGAAAGTACTCGCACCTGAAGATGCGGAGTGTTGCATTTGCCTTTCGGCATATGATGATGGTGCAGAGCTGCGTGAACTTCCTTGTGGGCACCATTTCCACTGTGCCTGCATTGATAAATGGCTGCATATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGAAAAGTGGCAGTAGCAGTGGAAGTGAAGAAGTATGATTGTGTGAATATCCTCCGGTCGAGAACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACCTGACCAGTGTAAATTTTGTATCCAAAATGTGTGATTAGCGTCATATATGTACTTGAAGTGACTCAAGACTGCTGTTCATATCCACATACATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATACATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTTCCTGCTTGTGTTAGCATGGTTTGTGCTTATGCTCCTGCCTTGGTCATTGGTTCAGCACAAAAACTGTTGTAAATGGGCTATCGGTCCTG TAAATTGTCAGGTACAAACGAAATGCGTCCTGCTT ]
[-] EMBL CA759752 [ GATGAACCTGAAAAACAACCTGCTGATGAGACAGGACCTTCTGGTGGAATAATGACAGAGTGTGGCACCAATCAACCTACTGAGAAAGTACTCGCACCTGAAGATGCGGAGTGTTGCATTTGCCTTTCGGCATATGATGATGGTGCAGAGCTGCGTGAACTTCCTTGTGGGCACCATTTCCACTGTGCCTGCATTGATAAATGGCTGCATATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGAAAAGTGGCAGTAGCAGTGGAAGTGAAGAAGTATGATTGTGTGAATATCCTCCGGTCGAGAACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACCTGACCAGTGTAAATTTTGTATCCAAAATGTGTGATAAGCGTCATATATGTACTTGAAGTGACTCAAGACTGCTGTTCATATCCACATACATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATATATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTTCCTGCTTGTGTTAGCATGGTTTGTGCTTATGCTCCTGCCTTGGTTATCGGTTCAGCACAAAAACTGTTGTAAATGGGCTATCGGTCCTGTTGAATTGTCAGGTACAAACGAAATGCGTCCTGCTTATGATTCA ]
[+] EMBL BI798769 [ GACAGGACCTTTTGGTGGAATAATGACAGAGTGTGGCACC ATCAACCTATTGAGAAAGTACTCGCACCTGAAGAT CGGAGTGTTGCATTTGCCTTTCGGCATATGATGATGGTGCAGAGCTGCGTGAACTTCCTTGTGGGCACCATTTCC CTGTGCCTGCATTGATAAATGGCTGCATATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGAAAAGTGGCAGTAGCAGTGGAAGTGAAGAAGTATGATTGTGTGAATATCCTCCGGTCGAGAACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACCTGACCAGTGTAAATTTTGTATCCCAAATGTGTGATTAGCGTCATATATGTACTTGAAGTGACTCAAGACTGCTGTTCATATCCACATACATGGTTGTCC ATGTGTCTTTTACTGTCCGGAATATATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTTCCTGCTTGTGTTAGCATGGTTTGTGCTTAaaaa ]
[-] EMBL CB665892 [ GGAATAATGACAGAGTGTGGCACCAATCAACCTATTGAGAAAGTACTCGCACCTGAAGATGCGGAGTGTTGCATTTGCCTTTCGGCATATGATGATGGTGCAGAGCTGCGTGAACTTCCTTGTGGGCACCATTTCCACTGTGCCTGCATTGATAAATGGCTGCATATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGAAAAGTGGCAGTAGCAGTGGAAGTGAAGAAGTATGATTGTGTGAATATCCTCCGGTCGAGAACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACCTGACCAGTGTAAATTTTGTATCCAAAATGTGTGATTAGCGTCATATATGTACTTGAAGTGACTCAAGACTGCTGTTCATATCCACATACATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATACATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTTCCTGCTTGTGTTAGCATGGTTTGTGCTTATGCTCCTGCCTTGGTCATTGGTTCAGCACAAAAACTGTTGTAAATGGGCTATCGGTCCTGTTGAATTGTCAGGTACAAACGAAATGCGTCCTGCTTATGATTCATCTCTTGTACTCTCGAAGTCCTACAGCCAGTTCTTCCGAACTGAAGCATTTTACCGAGCTGGGAGTCATAAAAGATGTTTTTGATCGGTCTGTTGTTGAACTGATAAGGTAATAAAATATTTGAAATCTGA]
[-] EMBL CB665890 [ GTGTGGCACCAATCAACCTATTGAGAAAGTACTCGCACCTGAAGATGCGGAGTGTTGCATTTGCCTTTCGGCATATGATGATGGTGCAGAGCTGCGTGAACTTCCTTGTGGGCACCATTTCCACTGTGCCTGCATTGATAAATGGCTGCATATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGAAAAGTGGCAGTAGCAGTGGAAGTGAAGAAGTATGATTGTGTGAATATCCTCCGGTCGAGAACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACCTGACCAGTGTAAATTTTGTATCCAAAATGTGTGATTAGCGTCATATATGTACTTGAAGTGACTCAAGACTGCTGTTCATATCCACATACATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATACATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTTCCTGCTTGTGTTAGCATGGTTTGTGCTTATGCTCCTGCCTTGGTCATTGGTTCAGCACAAAAACTGTTGTAAATGGGCTATCGGTCCTGTTGAATTGTCAGGTACAAACGAAATGCGTCCTGCTTATGATTCATCTCTTGTACTCTCGAAGTCCTACAGCCAGTTCTTCCGAACTGAAGCATTTTACCGAGCTGGGAGTCATAAAAGATGTTTTTGATCGGTCTGTTGTTGGACTGATAAGGTAATAAAATATTTGAAATCTGA]
[+] EMBL BQ907040 [ ccgTATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGAAAAGTGGCAGTAGCAGTGGAAGTGAAGAAGTATGATTGTGTGAATATCCTCCGGTCGAGAACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACCTGACCAGTGTAAATTTTGTATCCAAAATGTGTGATTAGCGTCATATATGTACTTGAAGTGACTCAAGACTGCTGTTCATATCCACATACATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATATATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTTCCTGCTTGTGTTAGCATGGTTTGTGCTTATGCTCCTGCCTTGGTCATTGGTTCAGCACAAAAACTGTTGTAAATGGGCTATCGGTCCTGTTGAATTGTCAGGTACAAACGAAATGCGTCCTGCTTATGATTaaaaa ]
consensusID : consensus_14571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence
[GCGGACTGGGCCTACTCCCGCCCCGTCGTGGCGCTCGACCTGCTCTGGAACCTCGCTTTCATCACCGTCGCCGCCGTCGTGCTCGTGCTCAGCCGTGGCGAGGACTCGCCCATGCCGCTCCGGACCTGGGTCGCCGGCTACGCCCTGCAGTGCGTCGTCCACATGGTCTGCGTCGCCATCGAGTACCGGATGCGCCGGGGGCAGCGTGACAGGGCCCCGGCGTCCGCCGACGAAGAAAGGGGAAAGTGACGGGTCGTCTTCATCTACGATGATGATGTCACGGAAGACAATCGCCCGTGGTAGCTGCACCCGATTGCTTCAGTATTGCNAAAGCACCTGGAGTTCAGCTTAATACATGTTCTCCTTCCATATGGTTGGAATAATTGGATTTTAATTGGATATCTGCTGGGGTGAAGAAGTTTACCGTGAAGCACCTCCACTTTACTGGTTTGCATATCTTCCTGNANTGANNTTTCCTTGTTGTTCCGTTTGCCCCGNCTGCACATGGTATGCNTTNTTTGNGCCACCTGCTANACTTCCCTTTCGTTCCNTTNGAAGAANTCTAAAAAATTCCCATCCAAANATTCGAAAAAAAACTAAAAAATTTAAAAAANANTTTGGGAAAAAAAATTTGGCCCCNCCTTN]
[+] EMBL BE229106 [GCGGACTGGGCCTACTCCCGCCCCGTCGTGGCGCTCGACCTGCTCTGGAACCTCGCTTTCATCACCGTCGCCGCCGTCGTGCTCGTGCTCAGCCGTGGCGAGGACTCGCCCATGCCGCTCCGGACCTGGGTCGCCGGCTACGCCCTGCAGTGCGTCGTCCACATGGTCTGCGTCGCCATCGAGTACCGGATGCGCCGGGGGCAGCGTGACAGGGCCCCGGCGTCCGCCGACGAAGAAAGGGGAAAGTGACGGGTCGTCTTCATCTACGATGATGATGTCACGGAAGACAATCGCCCGTGGTAGCTGCACCCGATTGCTTCAGTATTGCNAAAGCACCTGGAGTTCAGCTTAATACATGTTCTCCTTCCATATGGTTGGAATAATTGGATTTTAATTGGATATCTGCTGGGGTGAAGAAGTTTACCGTGAAGCACCTCCACTTTACTGGTTTGCATATCTTCCTGNANTGANNTTTCCTTGTTGTTCCGTTTGCCCCGNCTGCACATGGTATGCNTTNTTTGNGCCACCTGCTANACTTCCCTTTCGTTCCNTTNGAAGAANTCTAAAAAATTCCCATCCAAANATTCGAAAAAAAACTAAAAAATTTAAAAAANANTTTGGGAAAAAAAATTTGGCCCCNCCTTN]
consensusID : consensus_14571#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAAGTGGTGGTCCGTTGGAGTAGGCTGCGCATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATACATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTCCTGCTTGTGTAGCATGGTTTGTGCTATGCTCCTGCCTTGGTCATTGGTCAGCACAAAAACTGTTGTAAATGGGCTATCGGTCCTGTTAATTGTCAGGTNCAAACGAAATGCGTCCTGCTTATGATTCAAAAA]
[+] EMBL AU176520 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAAGTGGTGGTCCGTTGGAGTAGGCTGCGCATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATACATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTCCTGCTTGTGTAGCATGGTTTGTGCTATGCTCCTGCCTTGGTCATTGGTCAGCACAAAAACTGTTGTAAATGGGCTATCGGTCCTGTTAATTGTCAGGTNCAAACGAAATGCGTCCTGCTTATGATTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14571#0 TCCTTGCCCCCCTCCCCCTCTCTCTCCCCAGAGGAGCAGCAAGGTCTCTCTCCTCCTCGA 60
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 TCTGCCGCAGGGGGTCCCCTCGATGGCGACGCCTCGCTCCCCGAGCACCCGCGGCGACGC 120
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 GCTCCTTGACTCGGCGCCCCTGCTCGGCGGGGGCGGCGGCGGCGGCGGCGGCCGGCGCCG 180
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 AGGGGGCGCGCTCCGCCGGCCGTCGCTCCGCGGCGCGGCGCGGCTGCTGCGGCGCGGGGG 240
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 GCGGCGGGCGATGCGGGAGCCGTCGGTGCTGGTGCGGGAGGCGGCCGCGGAGCACCTCGA 300
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 GGAGCGGCAGGCGGACTGGGCCTACTCCCGCCCCGTCGTGGCGCTCGACCTGCTCTGGAA 360
consensus_14571#1 ----------GCGGACTGGGCCTACTCCCGCCCCGTCGTGGCGCTCGACCTGCTCTGGAA 50
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 CCTCGCTTTCATCACCGTCGCCGCCGTCGTGCTCGTGCTCAGCCGTGGCGAGGACTCGCC 420
consensus_14571#1 CCTCGCTTTCATCACCGTCGCCGCCGTCGTGCTCGTGCTCAGCCGTGGCGAGGACTCGCC 110
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 CATGCCGCTCCGGACCTGGGTCGCCGGCTACGCCCTGCAGTGCGTCGTCCACATGGTCTG 480
consensus_14571#1 CATGCCGCTCCGGACCTGGGTCGCCGGCTACGCCCTGCAGTGCGTCGTCCACATGGTCTG 170
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 CGTCGCCATCGAGTACCGGATGCGCCGGGGGCAGCGTGACAGGGCCCCGGCGTCCGCCGA 540
consensus_14571#1 CGTCGCCATCGAGTACCGGATGCGCCGGGGGCAGCGTGACAGGGCCCCGGCGTCCGCCGA 230
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 CGAGGAAAGGGGAA-GTGACGGGTCGTCTTCATCTAGCGATGATGATGTCACGGAGGACG 599
consensus_14571#1 CGAAGAAAGGGGAAAGTGACGGGTCGTCTTCATCTA-CGATGATGATGTCACGGAAGACA 289
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 ATCGCC-GTGGTAGCTGCACC-GATTGCGTCAGTATTGCAAA-GCACCTGGAGT-CAGCT 655
consensus_14571#1 ATCGCCCGTGGTAGCTGCACCCGATTGCTTCAGTATTGCNAAAGCACCTGGAGTTCAGCT 349
consensus_14571#2 ----------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTT 38
** * * ** * * ** *
consensus_14571#0 -AATACAATGTTCTCCTTC-ATATGGT--GGATAATTGGATTTTA-TTGGATATCTGCTG 710
consensus_14571#1 TAATACA-TGTTCTCCTTCCATATGGTTGGAATAATTGGATTTTAATTGGATATCTGCTG 408
consensus_14571#2 TTTTTTTTTTTTTTTTTTTTTTTTTTT-----TTTTTTTTTATAAAGTGGTGGTCCGTTG 93
* * ** * ** * * * * ** * * * *** ** * **
consensus_14571#0 GGGGTGAGGATGTTATCCGTGATGCACCTCAGCTTTACTGGCTTTGCATAGTCTTTCTGG 770
consensus_14571#1 GGG-TGAAGAAGTTTACCGTGAAGCACCTCCACTTTACTGG-TTTGCATA-TCTTCCTGN 465
consensus_14571#2 GAG--TAGGCTGCGCATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATA--CATGCTTA 149
* * * * * ** ** **** * * *** * * **
consensus_14571#0 CATTTGACGTGTTCTTTGTTGTATTCTGTGTTGCTCTGGCTTGCATCATTGGTATTGCTG 830
consensus_14571#1 AN--TGANNT-TTCCTTGTTGT--TCCGT-TTGCCCCGNCT-GCAC--ATGGTATGCNTT 516
consensus_14571#2 GT--TGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTCCTGCTTGTGTAGCATG 207
** * **** * * * * * * * ** *
consensus_14571#0 TATGTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGGAAGGAG 890
consensus_14571#1 NTTTGNGCCACCTGCTANACTTCCCTTTCGTTCCNTTNGAAGAANTCTA--AAAAATTCC 574
consensus_14571#2 GTTTGTGCTATGCTCCTGCCTTGGTCATTGGTCAGCACAAAAACTGTTG--TAAATGGGC 265
* ** * * * ** *
consensus_14571#0 CGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGGAGAACAGATGAACCTG 950
consensus_14571#1 CATCCAAA-----NATTCGAAAAA----AAACTAAAAAATTTAAAAAAN-----ANTTTG 620
consensus_14571#2 TATC---------GGTCCTGTTAATTGTCAGGTNCAAA--CGAAATGCGTCCTGCTTATG 314
** * * ** * * *** * **
consensus_14571#0 AAAAACAAACTGCTGATGAGACAGGACCTTTTGGTGGAATAATGACAGAGTGTGGCACCA 1010
consensus_14571#1 GGAAAAAAA------ATTTGGCCCCNCCTTN----------------------------- 645
consensus_14571#2 ATTCAAAAA--------------------------------------------------- 323
* ***
consensus_14571#0 ATCAACCTATTGAGAAAGTACTCGCACCTGAAGATGCGGAGTGTTGCATTTGCCTTTCGG 1070
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 CATATGATGATGGTGCAGAGCTGCGTGAACTTCCTTGTGGGCACCATTTCCACTGTGCCT 1130
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 GCATTGATAAATGGCTGCATATCAACGCAACATGCCCCCTGTGCAAGTTCAATATCCGGA 1190
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 AAAGTGGCAGTAGCAGTGGAAGTGAAGAAGTATGATTGTGTGAATATCCTCCGGTCGAGA 1250
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 ACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACCTGACCAG 1310
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 TGTAAATTTTGTATCCAAAATGTGTGATTAGCGTCATATATGTACTTGAAGTGACTCAAG 1370
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 ACTGCTGTTCATATCCACATACATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATACAT 1430
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 GCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAGTGATCCTCACATTTCCTGCTTGTGTTA 1490
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 GCATGGTTTGTGCTTATGCTCCTGCCTTGGTCATTGGTTCAGCACAAAAACTGTTGTAAA 1550
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 TGGGCTATCGGTCCTGTTGAATTGTCAGGTACAAACGAAATGCGTCCTGCTTATGATTCA 1610
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 TCTCTTGTACTCTCGAAGTCCTACAGCCAGTTCTTCCGAACTGAAGCATTTTACCGAGCT 1670
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 GGGAGTCATAAAAGATGTTTTTGATCGGTCTGTTGTTGAACTGATAAGGTAATAAAATAT 1730
consensus_14571#1 ------------------------------------------------------------
consensus_14571#2 ------------------------------------------------------------
consensus_14571#0 TTGAAATCTGA 1741
consensus_14571#1 -----------
consensus_14571#2 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||