These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1967 fasta sequence [TCCGCCTCCACTTAGCTTGAGACCGCTTTATTCCTCGCTCAGGGAGGAGGAGGAGAAGGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATT-GT-GTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT-GGGTTGAACTCAAGCAATTTGCAAAGTCAATTGATATAAATGATAAAGATCCTGTTGTGCACAAGCACACTCCCTACATTGTTATCCTTGTGAGGC-TTGCAGAAAAATGGGCAGATGCACATGATGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTCAAGGCACTGATTCGAGAATATATGCTTAATTTAGATGAAGAAAACTACAAAGAAGCAGTGGAGTCCTCGTATAAAGTCTCTGTTACTCCAGGGATCAGTGATGAGATCCGTCAGATAATTGATGATAGCTCCGCTGAAGTGAATTCATCTTCTTCAGATTTCTGGGTTTTAGTGGCTGCTTTGAAGGAATTTATTGCAAATGAGGGCAACGGTGAGCTACCTCTTGAGGGGACGATACCTGATATGACTTCACTTACTGAGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCTTGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGTGAGATTGATGAGGATGTG-CCTAGGCTGAAG-ACAGCTGCTGTTTCA-G-TAATG-AGTGAGATGGGTATGAACGGGGCACCTTTGTCTGA-AGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCA-CCAAA-CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA-CCCCTTGAAACAGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK111534 [TCCGCCTCCACTTAGCTTGAGACCGCTTTATTCCTCGCTCAGGGAGGAGGAGGAGAAGGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATT GT GTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT GGGTTGAACTCAAGCAATTTGCAAAGTCAATTGATATAAATGATAAAGATCCTGTTGTGCACAAGCACACTCCCTACATTGTTATCCTTGTGAGGC TTGCAGAAAAATGGGCAGATGCACATGATGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTCAAGGCACTGATTCGAGAATATATGCTTAATTTAGATGAAGAAAACTACAAAGAAGCAGTGGAGTCCTCGTATAAAGTCTCTGTTACTCCAGGGATCAGTGATGAGATCCGTCAGATAATTGATGATAGCTCCGCTGAAGTGAATTCATCTTCTTCAGATTTCTGGGTTTTAGTGGCTGCTTTGAAGGAATTTATTGCAAATGAGGGCAACGGTGAGCTACCTCTTGAGGGGACGATACCTGATATGACTTCACTTACTGAGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCTTGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGTGAGATTGATGAGGATGTG CCTAGGCTGAAG ACAGCTGCTGTTTCA G TAATG AGTGAGATGGGTATGAACGGGGCACCTTTGTCTGA AGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA CCCCTTGAAACAGT ] [+] EMBL CB655439 [ TCAGCCATGAGGAGGAGAAGGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATT GT GTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT GGGTTGAACTCAAGCAATTTGCAAAGTCAATTGATATAAATGATAAAGATCCTGTTGTGCACAAGCACACTCCCTAC ] [+] EMBL CB677904 [ GAGAAGGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATT GT GTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT GGGTTGAACTCAAGCAATTTGCAAAGTCAATTGATATAAATGATAAAGATCCTGTTGTGCACAAGCACACTCCCTACATTGTTATCCTTGTGAGGCTTTGCAG AAAATGGGCAGATGCACATG ] [+] EMBL CB677867 [ GACAATGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAGGACCAAGTACGATCGCCAGCTCATGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTATGGAGTGTTACTGTTGGTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCATAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCATGAAAGCTAATATT GT GTTGGGTGCTGCACGTTCATATGGTCTAACTGGGCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT GGGTTGAACTCAAGCAATTTGCAGAGTCAATTGATATAAATGATAAAG ] [+] EMBL CF306486 [ GAAGGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGC AATATT GTNGTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCATGGGGTTGAACTCAAGCAATTTGC ] [+] EMBL CF326150 [ GCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATTGGT GTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCATGGGGTTGAACTCAAGCAATTTGCAAAGTCAATT ] [+] EMBL CB677866 [ gagcctgtGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGGTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCACAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATT GT GTTGGGTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT GGGTTGAACTCAAGCAATTTGCAAAGTCAATTGATATGAATGATAAAGATCCTGTTGTGCACAAGCAC ] [-] EMBL CB677905 [ CTTACTGAGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCTTGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGTGAGATTGATGAGGATGTG CCTAGGCTGAAG ACAGCTGCTGTTTCA G TAATG AGTGAGATGGGTATGAACGGGGCACCTTTGTCTGA AGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA CCCC TGAAAC ] [-] EMBL CB677868 [ TGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGTGAGATTGATGAGGATGTG CCTAGGCTGAAG ACAGCTGCTGTTTCA G TAATG AGTGAGATGGGTATGAACGGGGCACCTTTGTCTGA AGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATGGACATGGGAAAAGGTCAAAATA CCCC TGAAA ] [+] EMBL BI812823 [ GTGCCCTAGGCTGAAGAACACTTGCTGTTTCACGTTAATGAAGTGAGATGGGTATGAACCGGGCACCCTTGTCTGAGAGACCTGATTACTGAAATGTGCCGGTTTGGGGGT CAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCCAGAAGTAATTAAGCTGGTCACCCAAACCAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACCAATCTCAAGTTTTGGCGTTAT ACATCCATCTGGTATAGAGCTTTTCGGAACCTCACCCCATTAATTACCTTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCCATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACCTGGGAAAAGGTCCCAATACCCCCTTGAAAAA AAAAA ] [+] EMBL CF330698 [ ATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA CCCCTTGAAACAGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF315347 [ AAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA CCCCTTGAAACAGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA ] [+] EMBL CF313386 [ AAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA CCC ] [+] EMBL CF299736 [ TTTATATTCAACGGGATTGATCACAAATGTCAAGTTTTGGCGTTATAACATGAATCTGGTATAGAGCTATGCGGAACCTCACCCATTTAATTACATTAGAGTTGCCCCATATTCTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGACAGATTTGGAATTATCATCGTATTAACATGGGAAAAGGTCTAAATA CCC ] consensusID : consensus_14579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1140 fasta sequence [CTCAAGCAATTTGCANAGNCAATTGATATAGNTGACANNNATNCTGNTGTGCACAGGCACACTCCCTACATTGTTATCCTTGCGAGGCTTGCAGANAAATGGGCAGATGCACATGATGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTNAAGGCACTGATTCGAGAACATATGCTTAATTTATGATGAAGAAAACTACAAAGAAGCAGTGGAGNCCTNGTATAAAGTCTCTGTTACTCCAGGGATCAGTGATGANATCCGTCAGATAATTGATGATAGNTCCGCTGAAGNGAATTCATCTTCTTCANATTTCTGGGTTTTAGTGGNTGCTTTGAAGGAATTTATTGCAAATGANGGCAACGGTGAGCTACCTNTTGAGGGGACGATACCTGATATGACTTCACTTACTGAGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCTTGGAGCATCA-TGT-AAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTC-TATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCANA-GTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAAAATACTTCACCGATGAANACTACTGCTTTGCAATGAACTTCTATGNTCTGCTACGCGCTGGTGATCGACTTGCAGCCCAACTATAACAGATG-CCCTGGAATCTTTGAAAGGCTGAAGACAGCTGCTGCTTCAGTAACGAGTGAAATGGGTATGAACGGGGCACCTTTGTCTGAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGGCTGCCTTGCATTGGCGGAGTGAGCATGCCCAAGAACGTGAATTGAAGCTGGGTGCAACCAAACACGTCTTGTGCCTGTTGCTGGGGAACATTGTGATGATTGCAACGGGGATTGATGCACAAATGCTGCAAGTTTNTGGCGTTGATGAACATGCAATGCTGGGTGATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGCGCATGAATAATCACTGGTCCATATAAAAAAAAAA] [+] EMBL CA767263 [CTCAAGCAATTTGCANAGNCAATTGATATAGNTGACANNNATNCTGNTGTGCACAGGCACACTCCCTACATTGTTATCCTTGCGAGGCTTGCAGANAAATGGGCAGATGCACATGATGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTNAAGGCACTGATTCGAGAACATATGCTTAATTTATGATGAAGAAAACTACAAAGAAGCAGTGGAGNCCTNGTATAAAGTCTCTGTTACTCCAGGGATCAGTGATGANATCCGTCAGATAATTGATGATAGNTCCGCTGAAGNGAATTCATCTTCTTCANATTTCTGGGTTTTAGTGGNTGCTTTGAAGGAATTTATTGCAAATGANGGCAACGGTGAGCTACCTNTTGAGGGGACGATACCTGATATGACTTCACTTACTGAGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCTTGGAGCATCA TGT AAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTC TATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCANA GTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAAAATACTTCACCGATGAANACTACTGCTTTGCAATGAACTTCTATGNTCTGCTACGCGCTGGTGATCGACTTGCAGCCCAACTATAACAGATG CCCTGGAATCTTTGAAAGGCTGAAGACAGCTGCTGCTTCAGTAACGAGTGAAA ] [+] EMBL BQ909250 [ TCATTGTAAAAGGATATCTTGAA CGAATTGATAGAGACCCTGATTCGTATTTCACGGGCATACAT NACATTTTGC CNAATGCTAGAAAACTCAGAGGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAAAATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGCGCTGTTGATCGACTTGCAG CCAACTATAACAGATGCCCCTGGAATCTTTGAAAGGCTGAAGACAGCTGCTGTTTCAGTAATGAGTGAGATGGGTATGAACGGGGCACCTTTGTCTGAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGGCTGCCTTGCATTGGCGGAGTGAGCATGCCCAAGAACGTGAATTGAAGCTGGGTGCAACCAAACACGTCTTGTGCCTGTTGCTGGGGAACATTGTGATGATTGCAACGGGGATTGATGCACAAATGCTGCAAGTTTNTGGCGTTGATGAACATGCAATGCTGGGTGATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGCGCATGAATAATCACTGGTCCATATAAAAAAAAAA] consensusID : consensus_14579#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [GACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGGCTGAAGACAGCTGCTGTTTCAGTAATGAGTGAGATGGGTATGAACGGGGCACCTTTGTTTGAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCACCAAACAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGGGAAGGTCAAAATACCCCTG] [-] EMBL CB655440 [GACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGGCTGAAGACAGCTGCTGTTTCAGTAATGAGTGAGATGGGTATGAACGGGGCACCTTTGTTTGAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCACCAAACAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGGGAAGGTCAAAATACCCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14579#0 TCCGCCTCCACTTAGCTTGAGACCGCTTTATTCCTCGCTCAGGGAGGAGGAGGAGAAGGC 60 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 GAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGG 120 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 AGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCA 180 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 AGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGA 240 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 AGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTG 300 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 TGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACA 360 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 TGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTAT 420 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 GTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTC 480 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 TGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTC 540 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 AGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATTGTGT 600 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 TGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACA 660 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 ATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCATGGG 720 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 TTGAACTCAAGCAATTTGCAAAGTCAATTGATATAAATGATAAAGATCCTGTTGTGCACA 780 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ----CTCAAGCAATTTGCANAGNCAATTGATATAGNTGACANNNATNCTGNTGTGCACAG 56 consensus_14579#0 AGCACACTCCCTACATTGTTATCCTTGTGAGGCTTGCAGAAAAATGGGCAGATGCACATG 840 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 GCACACTCCCTACATTGTTATCCTTGCGAGGCTTGCAGANAAATGGGCAGATGCACATGA 116 consensus_14579#0 ATGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTCAAGGCACTGATTCGAGAAT 900 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 TGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTNAAGGCACTGATTCGAGAACA 176 consensus_14579#0 ATATGCTTAATTTAGATGAAGAAAACTACAAAGAAGCAGTGGAGTCCTCGTATAAAGTCT 960 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 TATGCTTAATTTATGATGAAGAAAACTACAAAGAAGCAGTGGAGNCCTNGTATAAAGTCT 236 consensus_14579#0 CTGTTACTCCAGGGATCAGTGATGAGATCCGTCAGATAATTGATGATAGCTCCGCTGAAG 1020 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 CTGTTACTCCAGGGATCAGTGATGANATCCGTCAGATAATTGATGATAGNTCCGCTGAAG 296 consensus_14579#0 TGAATTCATCTTCTTCAGATTTCTGGGTTTTAGTGGCTGCTTTGAAGGAATTTATTGCAA 1080 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 NGAATTCATCTTCTTCANATTTCTGGGTTTTAGTGGNTGCTTTGAAGGAATTTATTGCAA 356 consensus_14579#0 ATGAGGGCAACGGTGAGCTACCTCTTGAGGGGACGATACCTGATATGACTTCACTTACTG 1140 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 ATGANGGCAACGGTGAGCTACCTNTTGAGGGGACGATACCTGATATGACTTCACTTACTG 416 consensus_14579#0 AGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCT 1200 consensus_14579#2 ------------------------------------------------------------ consensus_14579#1 AGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCT 476 consensus_14579#0 TGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCAC 1260 consensus_14579#2 -----------------------------------------GACCCTGATTCTATTTCAC 19 consensus_14579#1 TGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCAC 536 ******************* consensus_14579#0 GGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCA 1320 consensus_14579#2 GGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCA 79 consensus_14579#1 GGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCANAGTCTGTAGGTACCGCA 596 ****************************************** ***************** consensus_14579#0 GTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATG 1380 consensus_14579#2 GTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATG 139 consensus_14579#1 GTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAAAATACTTCACCGATG 656 ********************************************* ************** consensus_14579#0 AAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAG 1440 consensus_14579#2 AAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAG 199 consensus_14579#1 AANACTACTGCTTTGCAATGAACTTCTATGNTCTGCTACGCGCTGGTGATCGACTTGCAG 716 ** *************************** ********* **** ************** consensus_14579#0 CC-AACTATAACAGATGCCCTGGAATCTTTGAAAGTGAGATTGATGAGGATGTGCCTAGG 1499 consensus_14579#2 CC-AACTATAACAGATGCCCTGGAATCTTTGAAAG------------------------G 234 consensus_14579#1 CCCAACTATAACAGATGCCCTGGAATCTTTGAAAG------------------------G 752 ** ******************************** * consensus_14579#0 CTGAAGACAGCTGCTGTTTCAGTAATGAGTGAGATGGGTATGAACGGGGCACCTTTGTCT 1559 consensus_14579#2 CTGAAGACAGCTGCTGTTTCAGTAATGAGTGAGATGGGTATGAACGGGGCACCTTTGTTT 294 consensus_14579#1 CTGAAGACAGCTGCTGCTTCAGTAACGAGTGAAATGGGTATGAACGGGGCACCTTTGTCT 812 **************** ******** ****** ************************* * consensus_14579#0 GAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGG-CTGC 1618 consensus_14579#2 GAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGG-CTGC 353 consensus_14579#1 GAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGGCTGC 872 ******************************************************* **** consensus_14579#0 CTT-CATTGGCGGAGT-AGCAT-CCCAAGAA---GTAATTAAGCTGGTC---ACCAAACA 1669 consensus_14579#2 CTT-CATTGGCGGAGT-AGCAT-CCCAAGAA---GTAATTAAGCTGGTC---ACCAAACA 404 consensus_14579#1 CTTGCATTGGCGGAGTGAGCATGCCCAAGAACGTGAATTGAAGCTGGGTGCAACCAAACA 932 *** ************ ***** ******** * * * ******* ******** consensus_14579#0 G--TTTGTGCCT-TTGCTGGG-AACATT----TATATTCAACGGG-ATTGAT-CACAAAT 1719 consensus_14579#2 G--TTTGTGCCT-TTGCTGGG-AACATT----TATATTCAACGGG-ATTGAT-CACAAAT 454 consensus_14579#1 CGTCTTGTGCCTGTTGCTGGGGAACATTGTGATGATTGCAACGGGGATTGATGCACAAAT 992 ******** ******** ****** * * ******* ****** ******* consensus_14579#0 CT--CAAGTTTT-GGCGTTAT--AACAT-CAAT-CTGGT--ATAGAGCTTTTCGGAACCT 1770 consensus_14579#2 CT--CAAGTTTT-GGCGTTAT--AACAT-CAAT-CTGGT--ATAGAGCTTTTCGGAACCT 505 consensus_14579#1 GCTGCAAGTTTNTGGCGTTGATGAACATGCAATGCTGGGTGATAGAGCTTTTCGGAACCT 1052 ******* ****** ***** **** **** ******************* consensus_14579#0 CACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATG 1830 consensus_14579#2 CACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATG 565 consensus_14579#1 CACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGCGCATGA 1112 ***************************************************** *** consensus_14579#0 AAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACAT 1890 consensus_14579#2 AAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACAT 625 consensus_14579#1 ATAATCACTGGTCCATATAAAAAAAAAA-------------------------------- 1140 * ******* *********** * * consensus_14579#0 GGGAAAAGGTCAAAATACCCCTTGAAACAGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1950 consensus_14579#2 GGGGGAAGGTCAAAATACCCCTG------------------------------------- 648 consensus_14579#1 ------------------------------------------------------------ consensus_14579#0 AAAAAAAAAAAAAAAAA 1967 consensus_14579#2 ----------------- consensus_14579#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||