cluster # 14587

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Oryza sativa
cluster # 14587 cluster # 14587 Sequences # 17 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14587#0 length = 547 sequences # 9
consensus_14587#1 length = 463 sequences # 2
consensus_14587#2 length = 347 sequences # 2

consensus_14587#3 length = 311 sequences # 2
consensus_14587#4 length = 306 sequences # 1
consensus_14587#5 length = 251 sequences # 1

consensusID : consensus_14587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 547
fasta sequence

                              [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGCACAAATAAACTACTATTTCA-CTGCCTTATGGTGATGAAAGCACAAATGAGTAAATAATTCTCTTTGAGCAGCCATTCCTTGTCGTTTGGATAATGCAATATTTAGATTAAAGGTCCNNNNAAAAATGGCAGTAATTGGTTGCAGCACCTAGTTTCTATAAACTAAAGGACNGNACGNCNNNNNTTGTNNNCNGCNNNNNNNTATCNNNNNACT]

[+] EMBL CF195780             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGNTNNNGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGCACAAATAAACTACTATTTCA CTGCCTTATGGTGATGAAAGCACAAATGAGTAAATAATTCTCTTTGAGCAGCCATTCCTTGTCGTTTGGATAATGCAATATTTAGATTAAAGGTCCNNNNAAAAATGGCAGTAATTGGTTGCAGCACCTAGTTTCTATAAACTAAAGGACNGNACGNCNNNNNTTGTNNNCNGCNNNNNNNTATCNNNNNACT]
[+] EMBL CF195694             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGCACAAATAAACTACTATTTCA CTGCCTTATGGTGATGAAAGCACAAATGAGTAAATAATTCTCTTTGAGCAGCCATTCCTTGTCGTTTGGATAATGCAATATTTAGATTNNNNNTCC TAAAAAAATGGCAGTAATTGGTTGCAGnnnnnnnn                                                             ]
[+] EMBL CF195890             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGCACAAATAAACTACTATTTCA CTGCCTTATGGTGATGNNNGNACAAATGAGTAAATAATTCTCTTTGAGCAGCCATTCCTTGTCGTTTGGATNNNGNNNNATNNNNNNNAAAGGTCCTAAAAAAAATGGCAnn                                                                                 ]
[+] EMBL CF195884             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGCACAAATAAACTACTATTTCA CTGCCTTATGGTGATGNNNGNACAAATGAGTAAATAATTCTCTTTGAGCNNNCATTCCTTGTCGTTTGGATAATGNNNTATTNNNNNNAAAGGTNNNNNNAA                                                                                           ]
[+] EMBL CF195688             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGCACAAATAAACTACTATTTCA CTGCCTTATGGTGATGNNNGCACAAATGAGTAAATAATTCTCTTTGAGCAGCCATTCCTnnntcgntn                                                                                                                             ]
[+] EMBL CF195685             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGCACAAATAAACTACTATTTCA CTGCCTTATGGTGATGAAAGCACAAATGANTAAATAATTCTCTTTGnnna                                                                                                                                               ]
[+] EMBL CF195705             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGCNNAAATANNCTACTATTTCANNTGCCTTATGGTGATGAAAGCANNNATGAGTAAA                                                                                                                                                               ]
[+] EMBL CF195656             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGCACAAATAAACTACTATTNNN NTGCCTTATGNNNATGAA                                                                                                                                                                               ]
[+] EMBL CF195651             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACANGTATTTGAGCAGCACAAATAAACTACTAT                                                                                                                                                                                                      ]




>consensus_14587#0
TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAA
TTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTA
ACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACC
TGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTA
GTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTC
ATCATGGAATATTGCATACAGGTATTTGAGCAGCACAAATAAACTACTATTTCACTGCCT
TATGGTGATGAAAGCACAAATGAGTAAATAATTCTCTTTGAGCAGCCATTCCTTGTCGTT
TGGATAATGCAATATTTAGATTAAAGGTCCNNNNAAAAATGGCAGTAATTGGTTGCAGCA
CCTAGTTTCTATAAACTAAAGGACNGNACGNCNNNNNTTGTNNNCNGCNNNNNNNTATCN
NNNNACT

consensusID : consensus_14587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 463
fasta sequence

                              [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATACTAGNCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTNNNNAAATGCCAATTATGTTGTCATGAACTTNNNTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGNACAAATAAACTACTATTTNNNTGCCTTATGGTGATGAAAGNNNNNAATGAGTANANAATTCTCNNNNNNNNNNCATTCCTTNNNGTTNNCATAATGNNNNNTNNAGATTAAANNNNNNNANNNNNTGGC]

[+] EMBL CF195775             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATACTAGNCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTNNNNAAATGCCAATTATGTTGTCATGAACTTNNNTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGNACAAATAAACTACTATTTNNNTGCCTTATGGTGATGAAAGNNNNNAATGAGTANANAATTCTCNNNNNNNNNNCATTCCTTNNNGTTNNCATAATGNNNNNTNNAGATTAAANNNNNNNANNNNNTGGC]
[+] EMBL CF195689             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTGTCATCATGGAATATTGCATACAGGTATTTGAGCAGCACAAATAAACTACTATTTCACTGCCTTATGGTGATGANNGNNNNN  TGAGTANnn                                                                         ]




>consensus_14587#1
TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAA
TTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTA
ACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACC
TGTTGCTACATACTAGNCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTN
NNNAAATGCCAATTATGTTGTCATGAACTTNNNTGTCAATTTATGTGCTTTGAACTTGTC
ATCATGGAATATTGCATACAGGTATTTGAGCAGNACAAATAAACTACTATTTNNNTGCCT
TATGGTGATGAAAGNNNNNAATGAGTANANAATTCTCNNNNNNNNNNCATTCCTTNNNGT
TNNCATAATGNNNNNTNNAGATTAAANNNNNNNANNNNNTGGC

consensusID : consensus_14587#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 347
fasta sequence

                              [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTNAATTTATGTGCTTNNNACTTGTCATCATGGAATANNGCATACNNNTNNNTGAGCNNNNNNNNTANNCTAC]

[+] EMBL CF195673             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTNAATTTATGTGCTTNNNACTTGTCATCATGGAATANNGCATACNNNTNNNTGAGCNNNNNNNNTANNCTAC]
[+] EMBL CF195675             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTGTCATGNNCTNTGGTGNNNNNTNATGTGCTTtgnn                                                     ]




>consensus_14587#2
TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAA
TTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTA
ACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACC
TGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAATACAGTCGCTA
GTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTNAATTTATGTGCTTNNNACTTGTC
ATCATGGAATANNGCATACNNNTNNNTGAGCNNNNNNNNTANNCTAC

consensusID : consensus_14587#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 311
fasta sequence

                              [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTNNAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTANNNACTGAACTTTATGTGGATAANNNNNTTTGAATACAGTNNNTNGTGAAATGCCAATTATGTTGTCATGAACTTTGGTNNNAATTTATGTGCTTTGNNCTTNNNNNCATNNNATA]

[+] EMBL CF195858             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTNNAGTATGATTTGAAATATTGTTACCTGTTGCTACATAGTANNNACTGAACTTTATGTGGATAANNNNNTTTGAATACAGTNNNTNGTGAAATGCCAATTATGTTGTCATGAACTTTGGTNNNAATTTATGTGCTTTGNNCTTNNNNNCATNNNATA]
[+] EMBL CF195770             [TAAGNACCNGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACATANNNNNNACTGAACTT                                                                                                        ]




>consensus_14587#3
TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAA
TTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTA
ACTGGGATTCCCATTAACTGTACCTTGGTGGTTTNNAGTATGATTTGAAATATTGTTACC
TGTTGCTACATAGTANNNACTGAACTTTATGTGGATAANNNNNTTTGAATACAGTNNNTN
GTGAAATGCCAATTATGTTGTCATGAACTTTGGTNNNAATTTATGTGCTTTGNNCTTNNN
NNCATNNNATA

consensusID : consensus_14587#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGNNGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACNNNNNNNTCNNTNAACTTTATGTGGATAATANNTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTNNCATGNNCTTTNGTGTCAATTTATGTNNNNNNAACTTGTCATCATG]

[+] EMBL CF195691             [TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAATTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTAACTGGGATTCCCATTAACTGTACCTTGNNGGTTTCCAGTATGATTTGAAATATTGTTACCTGTTGCTACNNNNNNNTCNNTNAACTTTATGTGGATAATANNTTTTGAATACAGTCGCTAGTGAAATGCCAATTATGTTNNCATGNNCTTTNGTGTCAATTTATGTNNNNNNAACTTGTCATCATG]




>consensus_14587#4
TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAA
TTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTA
ACTGGGATTCCCATTAACTGTACCTTGNNGGTTTCCAGTATGATTTGAAATATTGTTACC
TGTTGCTACNNNNNNNTCNNTNAACTTTATGTGGATAATANNTTTTGAATACAGTCGCTA
GTGAAATGCCAATTATGTTNNCATGNNCTTTNGTGTCAATTTATGTNNNNNNAACTTGTC
ATCATG

consensusID : consensus_14587#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [TAAGTACCAGTGAAAGAAATGGATGATATATGTNNNNNNNNNNTGAAATGGAAACTTGAATTTACANGTGGNNAANNNAATCAAAGGTTTGANNNNNGATTTTTCTAGTTCCNNNTTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTNNNNTATGATTNNNNAATATTGTTACCTGNNGNNACNNNNNNNNCACTGAACTTTNNNNNNNTAATNNNNNTTGNNATACANNNNNNNNNNAAATGC]

[+] EMBL CF195653             [TAAGTACCAGTGAAAGAAATGGATGATATATGTNNNNNNNNNNTGAAATGGAAACTTGAATTTACANGTGGNNAANNNAATCAAAGGTTTGANNNNNGATTTTTCTAGTTCCNNNTTCTAACTGGGATTCCCATTAACTGTACCTTGGTGGTTTNNNNTATGATTNNNNAATATTGTTACCTGNNGNNACNNNNNNNNCACTGAACTTTNNNNNNNTAATNNNNNTTGNNATACANNNNNNNNNNAAATGC]




>consensus_14587#5
TAAGTACCAGTGAAAGAAATGGATGATATATGTNNNNNNNNNNTGAAATGGAAACTTGAA
TTTACANGTGGNNAANNNAATCAAAGGTTTGANNNNNGATTTTTCTAGTTCCNNNTTCTA
ACTGGGATTCCCATTAACTGTACCTTGGTGGTTTNNNNTATGATTNNNNAATATTGTTAC
CTGNNGNNACNNNNNNNNCACTGAACTTTNNNNNNNTAATNNNNNTTGNNATACANNNNN
NNNNNAAATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14587#0      TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAA 60
consensus_14587#2      TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAA 60
consensus_14587#4      TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAA 60
consensus_14587#1      TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAA 60
consensus_14587#3      TAAGTACCAGTGAAAGAAATGGATGATATATGTTAAATCAAGTTGAAATGGAAACTTGAA 60
consensus_14587#5      TAAGTACCAGTGAAAGAAATGGATGATATATGTNNNNNNNNNNTGAAATGGAAACTTGAA 60
                       *********************************          *****************

consensus_14587#0      TTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTA 120
consensus_14587#2      TTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTA 120
consensus_14587#4      TTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTA 120
consensus_14587#1      TTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTA 120
consensus_14587#3      TTTACAAGTGGTAAAAGTAATCAAAGGTTTGATAGTGGATTTTTCTAGTTCCAGATTCTA 120
consensus_14587#5      TTTACANGTGGNNAANNNAATCAAAGGTTTGANNNNNGATTTTTCTAGTTCCNNNTTCTA 120
                       ****** ****  **   **************     ***************   *****

consensus_14587#0      ACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAA-TATTGTTAC 179
consensus_14587#2      ACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAA-TATTGTTAC 179
consensus_14587#4      ACTGGGATTCCCATTAACTGTACCTTGNNGGTTTCCAGTATGATTTGAAA-TATTGTTAC 179
consensus_14587#1      ACTGGGATTCCCATTAACTGTACCTTGGTGGTTTCCAGTATGATTTGAAA-TATTGTTAC 179
consensus_14587#3      ACTGGGATTCCCATTAACTGTACCTTGGTGGTTTNNAGTATGATTTGAAA-TATTGTTAC 179
consensus_14587#5      ACTGGGATTCCCATTAACTGTACCTTGGTGGTTTNNNNTATGATTNNNNAATATTGTTAC 180
                       ***************************  *****    *******    * *********

consensus_14587#0      CTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAA-TACAGTCGC 238
consensus_14587#2      CTGTTGCTACATAGTAGTCACTGAACTTTATGTGGATAATAAGTTTTGAA-TACAGTCGC 238
consensus_14587#4      CTGTTGCTACNNNNNNNTCNNTNAACTTTATGTGGATAATANNTTTTGAA-TACAGTCGC 238
consensus_14587#1      CTGTTGCTACATACTAGNCACTGAACTTTATGTGGATAATAAGTTTTGAA-TACAGTCGC 238
consensus_14587#3      CTGTTGCTACATAGTANNNACTGAACTTTATGTGGATAANNNNNTTTGAA-TACAGTNNN 238
consensus_14587#5      CTGNNGNNACNNNNNNNNCACTGAACTTTNNNNNNNTAATNNNNNTTGNNATACANNNNN 240
                       ***  *  **           * ******       ***      ***   ****     

consensus_14587#0      TAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTCAATTTATGTGCTTTGAACTTG 298
consensus_14587#2      TAGTGAAATGCCAATTATGTTGTCATGAACTTTGGTGTNAATTTATGTGCTTNNNACTTG 298
consensus_14587#4      TAGTGAAATGCCAATTATGTTNNCATGNNCTTTNGTGTCAATTTATGTNNNNNNAACTTG 298
consensus_14587#1      TNNNNAAATGCCAATTATGTTGTCATGAACTTNNNTGTCAATTTATGTGCTTTGAACTTG 298
consensus_14587#3      TNGTGAAATGCCAATTATGTTGTCATGAACTTTGGTNNNAATTTATGTGCTTTGNNCTTN 298
consensus_14587#5      NNNNNAAATGC------------------------------------------------- 251
                            ******                                                 

consensus_14587#0      TCATCATGGAATATTGCATACAGGTATTTGAGCAGCACAAATAAACTACTATTTCACTGC 358
consensus_14587#2      TCATCATGGAATANNGCATACNNNTNNNTGAGCNNNNNNNNTANNCTAC----------- 347
consensus_14587#4      TCATCATG---------------------------------------------------- 306
consensus_14587#1      TCATCATGGAATATTGCATACAGGTATTTGAGCAGNACAAATAAACTACTATTTNNNTGC 358
consensus_14587#3      NNNNCATNNNATA----------------------------------------------- 311
consensus_14587#5      ------------------------------------------------------------
                                                                                   

consensus_14587#0      CTTATGGTGATGAAAGCACAAA-TGAGTAAATAATTCTCTTTGAGCAGCCATTCCTTGTC 417
consensus_14587#2      ------------------------------------------------------------
consensus_14587#4      ------------------------------------------------------------
consensus_14587#1      CTTATGGTGATGAAAGNNNNNAATGAGTANANAATTCTCNNNNNNNNNNCATTCCTTNNN 418
consensus_14587#3      ------------------------------------------------------------
consensus_14587#5      ------------------------------------------------------------
                                                                                   

consensus_14587#0      GTTTGGATAATGCAATATTTAGATTAAAGGTCCNNNNAAAAATGGCAGTAATTGGTTGCA 477
consensus_14587#2      ------------------------------------------------------------
consensus_14587#4      ------------------------------------------------------------
consensus_14587#1      GTTNNCATAATGNNNNNTNNAGATTAAANNNNNNNANNNNNTGGC--------------- 463
consensus_14587#3      ------------------------------------------------------------
consensus_14587#5      ------------------------------------------------------------
                                                                                   

consensus_14587#0      GCACCTAGTTTCTATAAACTAAAGGACNGNACGNCNNNNNTTGTNNNCNGCNNNNNNNTA 537
consensus_14587#2      ------------------------------------------------------------
consensus_14587#4      ------------------------------------------------------------
consensus_14587#1      ------------------------------------------------------------
consensus_14587#3      ------------------------------------------------------------
consensus_14587#5      ------------------------------------------------------------
                                                                                   

consensus_14587#0      TCNNNNNACT 547
consensus_14587#2      ----------
consensus_14587#4      ----------
consensus_14587#1      ----------
consensus_14587#3      ----------
consensus_14587#5      ----------