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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1120 fasta sequence
[TAAAGAAGATGGTAAAATTTTAGATAAGCGTGTCACAGACCTTCAGTTGGAAGACTTCCTGCTATATGGCCCACAAAATGAGCAGGGAAAGGGTGGAAAACCCTTGCTACGGAAACTGAAAGATGGTCGGATAGTGAATTGGAATGTGCAGTCAGATGACCCTCTTTGCACACTTCAAGAAGCTTTCGAGAAGGTCAATCCTAGATTGGGCTTCAATATTGAGCTCAAATTTGATGACAATCTTGAATACCAGGAGGAAGAGCTCACTTGTATCCTCCAGGCCATCCTGAAGGTTGTTTTTGAGTATGCCAAGGATCGGCCTATTATTTTCTCTAGCTTCCAGCCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGAGGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCGACCTAGTGCAGGAGATCACCGAGGCCGTCTCTGAGCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACGCCGCAACGCCACATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGAGCTTGTGCAATAATCGATCCAGTTGCCTTGCTGGTCTGCAGACTTTAGTGACTGATCTGTATACAGGAAGAAGAGGAGAGACCCCTTGTGGAGGGTTACAAGTTTACAAAACTTTTAAATAGGTTGATGTACTAGAGCTAAGCCCTGGTCCTGTTTTTTAATTTGCCCTGGGGACGTTTGGATTCATGATGGATCATGGATGATGCATCCTGTAGCAAGGAGTTGAAACAGTTGTTGTTACTGTTGTATCTGTAAGACTGTAACGACGACCTATTTGGGTGGAGTTGAATTGCAATGCGGAATTTGGCAAAAAAAAAAA]
[+] EMBL AK064485 [TAAAGAAGATGGTAAAATTTTAGATAAGCGTGTCACAGACCTTCAGTTGGAAGACTTCCTGCTATATGGCCCACAAAATGAGCAGGGAAAGGGTGGAAAACCCTTGCTACGGAAACTGAAAGATGGTCGGATAGTGAATTGGAATGTGCAGTCAGATGACCCTCTTTGCACACTTCAAGAAGCTTTCGAGAAGGTCAATCCTAGATTGGGCTTCAATATTGAGCTCAAATTTGATGACAATCTTGAATACCAGGAGGAAGAGCTCACTTGTATCCTCCAGGCCATCCTGAAGGTTGTTTTTGAGTATGCCAAGGATCGGCCTATTATTTTCTCTAGCTTCCAGCCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGAGGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCGACCTAGTGCAGGAGATCACCGAGGCCGTCTCTGAGCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACGCCGCAACGCCACATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGAGCTTGTGCAATAATCGATCCAGTTGCCTTGCTGGTCTGCAGACTTTAGTGACTGATCTGTATACAGGAAGAAGAGGAGAGACCCCTTGTGGAGGGTTACAAGTTTACAAAACTTTTAAATAGGTTGATGTACTAGAGCTAAGCCCTGGTCCTGTTTTTTAATTTGCCCTGGGGACGTTTGGATTCATGATGGATCATGGATGATGCATCCTGTAGCAAGGAGTTGAAACAGTTGTTGTTACTGTTGTATCTGTAAGACTGTAACGACGACCTATTTGGGTGGAGTTGAATTGCAATGCGGAATTTGGCAAAAAAAAAAA]
consensusID : consensus_1460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[GATTCGGCACGAGCTAGCTTCCACCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGANGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCNACCTANTGCAGGAGATCACCGAGGCCGTCTCTGANCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACNCCGCAACGCCNCATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGANCTTGTGCAATAATCNATCCANTTGCCTTGCTGGTCTGCCNACTTTANTGACTGATCTGTTTTCNGGAAGAANAAGANANACCCCNTGTGGAAGGTTTCNANTTTACAAAACTTTTAAATTNGTTGATGTTCTANAACTTAACCCCGGGTCCNGTTTTTTTNAATTTGCCCCTGGGGGACGTTTTGGATTCCCTNAA]
[+] EMBL AA752814 [GATTCGGCACGAGCTAGCTTCCACCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGANGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCNACCTANTGCAGGAGATCACCGAGGCCGTCTCTGANCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACNCCGCAACGCCNCATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGANCTTGTGCAATAATCNATCCANTTGCCTTGCTGGTCTGCCNACTTTANTGACTGATCTGTTTTCNGGAAGAANAAGANANACCCCNTGTGGAAGGTTTCNANTTTACAAAACTTTTAAATTNGTTGATGTTCTANAACTTAACCCCGGGTCCNGTTTTTTTNAATTTGCCCCTGGGGGACGTTTTGGATTCCCTNAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1460#0 TAAAGAAGATGGTAAAATTTTAGATAAGCGTGTCACAGACCTTCAGTTGGAAGACTTCCT 60
consensus_1460#1 ------------------------------------------------------------
consensus_1460#0 GCTATATGGCCCACAAAATGAGCAGGGAAAGGGTGGAAAACCCTTGCTACGGAAACTGAA 120
consensus_1460#1 ------------------------------------------------------------
consensus_1460#0 AGATGGTCGGATAGTGAATTGGAATGTGCAGTCAGATGACCCTCTTTGCACACTTCAAGA 180
consensus_1460#1 ------------------------------------------------------------
consensus_1460#0 AGCTTTCGAGAAGGTCAATCCTAGATTGGGCTTCAATATTGAGCTCAAATTTGATGACAA 240
consensus_1460#1 ------------------------------------------------------------
consensus_1460#0 TCTTGAATACCAGGAGGAAGAGCTCACTTGTATCCTCCAGGCCATCCTGAAGGTTGTTTT 300
consensus_1460#1 ------------------------------------------------------------
consensus_1460#0 TGAGTATGCCAAGGATCGGCCTATTATTTTCTCTAGCTTCCAGCCTGACGCTGCACAGGT 360
consensus_1460#1 ------------GATTCGGCACGAG-------CTAGCTTCCA-CCTGACGCTGCACAGGT 40
* ***** ********** *****************
consensus_1460#0 TATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAAT 420
consensus_1460#1 TATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAAT 100
************************************************************
consensus_1460#0 CTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGG 480
consensus_1460#1 CTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGG 160
************************************************************
consensus_1460#0 CATGCAAGGAATCGTGTCGGAGGCACGAGGAATTTTCAGGCACCCCGCTGCTGTACCAAA 540
consensus_1460#1 CATGCAAGGAATCGTGTCGGAGGCACGANGAATTTTCAGGCACCCCGCTGCTGTACCAAA 220
**************************** *******************************
consensus_1460#0 GATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGC 600
consensus_1460#1 GATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGC 280
************************************************************
consensus_1460#0 GGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCGACCTAGTGCAGGAGAT 660
consensus_1460#1 GGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCNACCTANTGCAGGAGAT 340
******************************************* ***** **********
consensus_1460#0 CACCGAGGCCGTCTCTGAGCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTT 720
consensus_1460#1 CACCGAGGCCGTCTCTGANCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTT 400
****************** *****************************************
consensus_1460#0 GAGCAATGGGGCAGCAAAAGACGCCGCAACGCCACATTTCTCGCAGTGTGAAATCTCATT 780
consensus_1460#1 GAGCAATGGGGCAGCAAAAGACNCCGCAACGCCNCATTTCTCGCAGTGTGAAATCTCATT 460
********************** ********** **************************
consensus_1460#0 CTTGCTGAGGCTCATCCCTGAGCTTGTGCAATAATCGATCCAGTTGCCTTGCTGGTCTGC 840
consensus_1460#1 CTTGCTGAGGCTCATCCCTGANCTTGTGCAATAATCNATCCANTTGCCTTGCTGGTCTGC 520
********************* ************** ***** *****************
consensus_1460#0 AGACTTTAGTGACTGATCTGTATACAGGAAGAAGAGGAGAGACCCCTTGTGGAGGGTTAC 900
consensus_1460#1 CNACTTTANTGACTGATCTGTTTTCNGGAAGAANAAGANANACCCCNTGTGGAAGGTTTC 580
****** ************ * * ******* * ** * ***** ****** **** *
consensus_1460#0 AAGTTTACAAAACTTTTAAATAGGTTGATGTACTAGAGCTAAGCCCTGG-TCCTGTTTTT 959
consensus_1460#1 NANTTTACAAAACTTTTAAATTNGTTGATGTTCTANAACTTAACCCCGGGTCCNGTTTTT 640
* ****************** ******** *** * ** * *** ** *** ******
consensus_1460#0 T--AATTTGCCCT--GGGGACGTTT-GGATTCATGATGGATCATGGATGATGCATCCTGT 1014
consensus_1460#1 TTNAATTTGCCCCTGGGGGACGTTTTGGATTCCCTNAA---------------------- 678
* ********* ********** ******
consensus_1460#0 AGCAAGGAGTTGAAACAGTTGTTGTTACTGTTGTATCTGTAAGACTGTAACGACGACCTA 1074
consensus_1460#1 ------------------------------------------------------------
consensus_1460#0 TTTGGGTGGAGTTGAATTGCAATGCGGAATTTGGCAAAAAAAAAAA 1120
consensus_1460#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||