These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1463 fasta sequence [ACAGCATGAACAGGAAAGCTATGGGCCTATCGTATCTGGAGGCCCAATAAGCTCCAAGGATAGAGCCGGAGTGGGAGGCAGGGCAGCAGAGGCGCAGCCGAGCAGAAAGAACATCAGGAAGGAGAGGCTGAGGCCTGAGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACCTCGACGGAGTGGACACCTCCGCCGTCCTCTCCGACGCATCCAAGACCGTCGCCACCATCATCGGCAAGCCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTCAACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCATTCCCAAGGGCCGCTTCTACCTCAAGTTCTACGATTCCAAGGCCCATCGTGCACAAGAACATGCTCAATGTTTGCATGCTTTGCATCAAGAATAGATCAGTGTAAATGGGTCGTCTGTTGCTTGTTTAATGTCATCGTATTGGTTTTTGCAGTTTAGTTTCTCTCTGCAGTTTGGCAGTAAACCCTTGCCACAGCACGTATACTCTTCCATGCTAATTATGAGCAACTGAGCACTAATAAACCCCTTTTGATTTTCTTTTTATGTAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACAAGAGTCACCGTGGAACTGGAAATATGCTTCTGAATGCGGGGCTTTTAACTATTTGCCATGTTTAGATTTGGCAAATAACTATTTGCCACCCCTATCTCAATGACATGTGGGTCCACATGTGTCTATGACGTGTGGGTTCAGCGGCAAAAAGTTAATTGCCACATCTAAATGTGGCAAATGGTTAAATATCGGTCTGAATGCAATTCGGCATGCTTGAGTTGAGAGCTCTGTGTGTGTGTTTTGTCTATTAAGGTTTGTCCCTGTATTAATGGGTGTGGGGGGCAGGCCTAAATTCAGTGTTTTAGCACACAGAATCAACCAAGGAAGCCTTTGCTGCGAGGTCATTTCTTCCCTTGACCACAGCAGTACTATATTTGATGGCTAGAAGTAGGAACCACAAGTTAATTAGGGCTTTGCATTTGGTGGTTGTTGGTGCTAAAGTGGTTTGGTACTTGCATATCAAAGGGTCTTTGTCTGTTTGGTTTGGTTCTTAAGCATGAAACTTTGCTGGTGTCTAGTTTTTGGTGTTGTGTTTGGCCCAAGTAGGGTGCCTTGCTGCCTAATTTATTATGACCTCTCTTTTGT] [+] EMBL CF296146 [ACAGCATGAACAGGAAAGCTATGGGCCTATCGTATCTGGAGGCCCAATAAGCTCCAAGGATAGAGCCGGAGTGGGAGGCAGGGCAGCAGAGGCGCAGCCGAGCAGAAAGAACATCAGGAAGGAGAGGCTGAGGCCTGAGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACCTCGACGGAGTGGACACCTCCGCCGTCCTCTCCGACGCATCCAAGACCGTCGCCACCATCATCGGCAAGCC ] [+] EMBL AK121033 [ AGCCGAGCAGAAAGAACATCAGGAAGGAGAGGCTGAGGCCTGAGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACCTCGACGGAGTGGACACCTCCGCCGTCCTCGCCGACGCATCCAAGACCGTCGCCACCATCATCGGCAAGCCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTCAACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCATTCCCAAGGGCCGCTTCTACCTCAAGTTCTACGATTCCAAGGCCCATCGTGCACAAGAACATGCTCAATGTTTGCATGCTTTGCATCAAGAATAGATCAGTGTAAATGGGTCGTCTGTTGCTTGTTTAATGTCATCGTATTGGTTTTTGCAGTTTAGTTTCTCTCTGCAGTTTGGCAGTAAACCCTTGCCACAGCACGTATACTCTTCCATGCTAATTATGAGCAACTGAGCACTAATAAACCCCTTTTGATTTTCTTTTTATGTAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACAAGAGTCACCGTGGAACTGGAAATATGCTTCTGAATGCGGGGCTTTTAACTATTTGCCATGTTTAGATTTGGCAAATAACTATTTGCCACCCCTATCTCAATGACATGTGGGTCCACATGTGTCTATGACGTGTGGGTTCAGCGGCAAAAAGTTAATTGCCACATCTAAATGTGGCAAATGGTTAAATATCGGTCTGAATGCAATTCGGCATGCTTGAGTTGAGAGCTCTGTGTGTGTGTTTTGTCTATTAAGGTTTGTCCCTGTATTAATGGGTGTGGGGGGCAGGCCTAAATTCAGTGTTTTAGCACACAGAATCAACCAAGGAAGCCTTTGCTGCGAGGTCATTTCTTCCCTTGACCACAGCAGTACTATATTTGATGGCTAGAAGTAGGAACCACAAGTTAATTAGGGCTTTGCATTTGGTGGTTGTTGGTGCTAAAGTGGTTTGGTACTTGCATATCAAAGGGTCTTTGTCTGTTTGGTTTGGTTCTTAAGCATGAAACTTTGCTGGTGTCTAGTTTTTGGTGTTGTGTTTGGCCCAAGTAGGGTGCCTTGCTGCCTAATTTATTATGACCTCTCTTTTGT] consensusID : consensus_14601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 754 fasta sequence [ACGAGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATCCTTGCCTCAACGTGTCCACCAACGTGAACCTCGACGGAGTGGACACCTCCGCCGTCCTCGCCGACGCATCCAAGACCGTCGCCACCATCATCGGCAAGCCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTCAACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCATTCCCAAGGGCCGCTTCTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACAAGAGTCACCGTGGAACTGGAAATATGCTTCTGAATGCGGGGCTTTTAACTA-TTTGCCATGTTTAGATTTGGCAAATAACTATTTGCCACCCCTATCTCAATGACATGTGGGTCCACATGTGTCTATGACGTGTGGGTTCAGCGGCA-AAAAGTTAATTGCCACATCTAAATGTGGCAAATGGTTAAATATCGGTCTGAATGCAATTTGGCATGCTTGAGTTGAGAAAAAAAAAAAAAAACACTGTCATGGCGTT] [+] EMBL BI804278 [ACGAGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATCCTTGCCTCAACGTGTCCACCAACGTGAACCTCGACGGAGTGGACACCTCCGCCGTCCTCGCCGACGCATCCAAGACCGTCGCCACCATCATCGGCAAGCCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTCAACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCATTCCCAAGGGCCGCTTCTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGAC ATGCAGTCGATGTATCAGTTTAATGTC AC AGAGTCACCGTGGAACTGGAAATATGCTTCTGAATGCGGGGCTTTTAACTACTTTGCCATGTTTAGATTTGGCAAATAACTATTTGCCACCCCTATCTCAATGACATGTGGGTCCACATGTGTCTATGACGTGTGGGTTCAGCGGCACAAAAGTTAATTGCCACATCTAAATGTGGC AATGGTTAAATATCGGTCTGAATGC ATTTGGCATGCTTGAGTTGAGAAAAAA ] [+] EMBL AU174604 [ TGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCATTCCCAAGGGCCGCTTNTACCTCAAGTTNTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCNCCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACAAGAGTCACCGTGGAACTGGAAATATGCTTNTGAATGCGGGGCTTTTAACTA TTTGCCATGTTTAGATTTGGCAAATAACTATTTGCCACCCCTATCTCAATGACATGTGGGTCCACATGTGTCTATGACGTGTGGGTTCAGCGGCA AAAAGTTAATTGCCACATCTAAATGTGGCAAATGGTTAAATATCGGTCTGAATGCAATTTGGCATGCTTGAGTTGAGAAAAAAAAAAA ] [-] EMBL CF296147 [ CGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCGACAAGAGTCACCGTGGAACTGGAAATATGCTTTTGAATGCGGGGCTTTTAAATA TTTGCCATGTTTAGATTTGGCAAATAACTATTTGCCACCCCTATTTCAATGACATGTGGGTCCACATGTGTTTATGACGTGTGGGTTCAGCGGCA AAAAGTTAATTGCCACATTTAAATGTGGCAAATGGTTAAATATCGGTTTGAATGCAAAATGGCATGCTTGAGTTAAAAAAAAAAAAAAAAAACACTGTCATGGCGTT] consensusID : consensus_14601#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [GTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCATTCCCAAGGGCCGCTTCTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCAACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAATCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACAAGAGTCACCGTGGAACTGGAAATATGCTTCTGAATGCGGGGCTTTTAACTATTTGCCATGTTTAGATTTGGCAAATAACTATTTGCCACCCCTATCTCAATGACATGTGGGTCCACATGTGTCTATGACGTGTGGGTTCAGCGGCAAAAAGTTAATTGCCACATCTAAATGTGGCAAATGGTTAAATATCGGTCTGAATGCAATTTGGCATGCTTGAGTTGAGAGCTCTGTGTGTGTGTTTTGTCTATTAAGGTTTGTCCCTGTATTAATGGGTGTGGGGGGCAGGCCTAAATTCAGTGTTTTAGCACACAGAATCAACCAAGGAAGCCTTTGCTGCGAGGTCATTTCTTCCCTTGACCACAGCAGTACTAAAAA] [-] EMBL CF293334 [GTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCATTCCCAAGGGCCGCTTCTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCAACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAATCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACAAGAGTCACCGTGGAACTGGAAATATGCTTCTGAATGCGGGGCTTTTAACTATTTGCCATGTTTAGATTTGGCAAATAACTATTTGCCACCCCTATCTCAATGACATGTGGGTCCACATGTGTCTATGACGTGTGGGTTCAGCGGCAAAAAGTTAATTGCCACATCTAAATGTGGCAAATGGTTAAATATCGGTCTGAATGCAATTTGGCATGCTTGAGTTGAGAGCTCTGTGTGTGTGTTTTGTCTATTAAGGTTTGTCCCTGTATTAATGGGTGTGGGGGGCAGGCCTAAATTCAGTGTTTTAGCACACAGAATCAACCAAGGAAGCCTTTGCTGCGAGGTCATTTCTTCCCTTGACCACAGCAGTACTAAAAA] consensusID : consensus_14601#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 594 fasta sequence [GAGCAGAAAGAACATCAGGAAGGAGAGGCTGAGGCCTGAGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACCTCG-ACGGAGTGGACACCT-CCGCCGTCCTCGCCGACGCATCCAAGACCGTCGCCACCATCATCGGCAAGCCCGAGGCCTATGTGAT-GGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTCAACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCAT-TCCCAAGGGC-CGCTT-CTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACAAGAGTCACCGTGGAACTGGAAAAAAAAAAAAAAAAAACACT] [+] EMBL CF300550 [GAGCAGAAAGAACATCAGGAAGGAGAGGCTGAGGCCTGAGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACCTCG ACGGAGTGGACACCT CCGCCGTCCTCGCCGACGCATCCAAGACCGTCGCCACCATCATCGGCAAGCCCGAGGCCTATGTGATNGGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTCAACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCAT TCCCAAGGGC CGCTT CTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACAAGAGTCACCGTGGAACTGGAAAAAAAAAAAAAAAAAACACT] [+] EMBL CF300414 [GAGCAGAAAGAACATCAGGAAGGAGAGGCTGAGGCCTGAGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACCTCG ACGGAGTGGACACCT CCGCCGTCCTCGCCGACGCATCCAAGACCGTCGCCACCATCATCGGCAAGCCCGA GCCTATGTGAT GGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTC ACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCAT TCCCAAGGGC CGCTT CTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGT ] [+] EMBL AU174605 [ GGCTGAGGCCTGAGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACCTCG ACGGAGTGGACACCT CCGCCGTCCTCGCCGACGCATCCAAGACCGTCGCCACCATCATCGGCAAGCCCGAGGCCTATGTGAT GGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTCAACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCAT TCCCAAGGGC CGCTT CTACCTCAAGTTCTACGATTCCAAGCGCTCGGACT ] [-] EMBL CF314485 [ ACGACGAGGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACCTCGAACGGAGTGGACACCTCCCGCCGTCCTCGCCGACGCATCCAAGACCGTCGCCACCATCATCGGCAAGCCCGAGGCCTATGTGAT GGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTCAACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCAT TCCCAAGGGC CGCTT CTACCTCAAGTTTTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACAAGAGTCACCGTGGAACTGGAAAAA ] [+] EMBL BI799671 [ ATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGAT CCTTGCCTCAACGTGTCCACCAACGTGAACCTCG ACGGAGTGGACACCT CCGCCGTCCTCGCCGACGCATCCAAGACCGTCGCCACCATCATCGGCAAGCCCGAGGCCTATGTGAT GGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTCAACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCAT TCCCAAGGGC CGCTT CTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGAC ATGCAGTCGATGTATCAGTTTAATGTC AC AGAGTCACCGTGGAACTGGAAAAAA ] [-] EMBL CF300415 [ GCAAGCCCGAGGCCTATGTGAT GGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTCAACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCAT TCCCAAGGGC CGCTT TTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACA ] [-] EMBL CF300551 [ GAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGTGGGCTGAACCCTGATGTCAACAAGAAGTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCAT TCCCAAGGGC CGCTT CTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACAAGAGTCACCG GGAAC GGAAAAAA ] [+] EMBL AA749693 [ AGCTATCCATATCCCAAGGGCTCGCTTGCTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGT STGTCAAGATGCATGAAACCTAAGAATTCCTAATATCTTGTTCATTGCCT ] consensusID : consensus_14601#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CAGGGAGAAGACTAGAAGAGGGAGGGCGACTCAGACGACGACGACGAAGGAGTCGGAATCGGAGAAGGAAGATGCCTTGCCTCAACGTGTCGACCAACGTGAACCTGGATGGGGTGGACACCTCCGCCGTCCTCGCCTTTTCCTCCAAGACCGTCGCCACCATCATCGGCAAGCCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGAGGGCTGAACCCTGACGTCAACAAGAAGCTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTGTCCATTCCCAAGGGCCGCTTCTATCTCAAGTTCTACGATTCCAAACGCTCGGACTTTGGATGGAATGGCACCACCTTTTAGGTTAAATGGTATGGCTTCAAGAATCTTGGAACCTACTCCCTCCATCCCAAAATGTTTGACGCCGTTGACTTTTTTAAAAATGTTTGACCATTCGTCTTATTCAAAAAAAATTAAGTAATTATTAATTCTTTTCCTATCATTTGATTTATTGTTAAATATACTTTTA] [+] EMBL CF331432 [CAGGGAGAAGACTAGAAGAGGGAGGGCGACTCAGACGACGACGACGAAGGAGTCGGAATCGGAGAAGGAAGATGCCTTGCCTCAACGTGTCGACCAACGTGAACCTGGATGGGGTGGACACCTCCGCCGTCCTCGCCTTTTCCTCCAAGACCGTCGCCACCATCATCGGCAAGCCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTACCCAGGAGCCTGCCGCTTATGGCGAGCTGGTTTCCATTGGAGGGCTGAACCCTGACGTCAACAAGAAGCTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTGTCCATTCCCAAGGGCCGCTTCTATCTCAAGTTCTACGATTCCAAACGCTCGGACTTTGGATGGAATGGCACCACCTTTTAGGTTAAATGGTATGGCTTCAAGAATCTTGGAACCTACTCCCTCCATCCCAAAATGTTTGACGCCGTTGACTTTTTTAAAAATGTTTGACCATTCGTCTTATTCAAAAAAAATTAAGTAATTATTAATTCTTTTCCTATCATTTGATTTATTGTTAAATATACTTTTA] consensusID : consensus_14601#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [GGCCTGTGGCNTCATAGATGCATGAACCTAGAGAATTGCCTAATATCTTGTTCCTTGCCTATNTGGAGGACCATGCNAGTCGATGTATGCAGTGTAANGTCTCACCAGAGTCCCCGTGGGATACTGGAAATATGCTTCTGAATGCGGGGCTTTTAACTATTTGCCACTGTTTAGATTTGCGCCAATAACTATTTGCCACCCCTATCTCAATGACACTGTGGGTCCANCACTGTGTCTATGACGTGTGGGTTCAGCGNCCAAAAGTTAATTGCCACATCTAAATGTGGCCAATGGTTAAATATCGGTCTGAATNCCATTTGGCATGCTTGAGTTGAGAGCTCTGTGTGTGTNTTTTGTCTATTAAGGTTTGTCCCCTGTATTAATGGGTGTGGGGGGCAGGCCTAAATTCAGTGTTTTAGCACCCCAGAATCAACCCAGGAACGCCCTTTGCTGCGAGGTCCAAAAAAAAAA] [+] EMBL BI807183 [GGCCTGTGGCNTCATAGATGCATGAACCTAGAGAATTGCCTAATATCTTGTTCCTTGCCTATNTGGAGGACCATGCNAGTCGATGTATGCAGTGTAANGTCTCACCAGAGTCCCCGTGGGATACTGGAAATATGCTTCTGAATGCGGGGCTTTTAACTATTTGCCACTGTTTAGATTTGCGCCAATAACTATTTGCCACCCCTATCTCAATGACACTGTGGGTCCANCACTGTGTCTATGACGTGTGGGTTCAGCGNCCAAAAGTTAATTGCCACATCTAAATGTGGCCAATGGTTAAATATCGGTCTGAATNCCATTTGGCATGCTTGAGTTGAGAGCTCTGTGTGTGTNTTTTGTCTATTAAGGTTTGTCCCCTGTATTAATGGGTGTGGGGGGCAGGCCTAAATTCAGTGTTTTAGCACCCCAGAATCAACCCAGGAACGCCCTTTGCTGCGAGGTCCAAAAAAAAAA] consensusID : consensus_14601#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [GAGAGGCTGAGGCCTGAGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACCTCGACGGAGTGGACACCTCCGCCGTCCTCGNCGACGCATCCAAGACCGTCGCCACCATCATNGGCAAGNCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGATTTNGAGNNACCNAGNAGCCTGCCGNTTATGGCGNAGNTTGNTTTNCATTTGGTGGGNTGAACCNTTGTTTNTCAACANAGNAGNTTNACGTGTTGTCATTTNTCTCTATTNC] [+] EMBL OS16112A [GAGAGGCTGAGGCCTGAGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATCGGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACCTCGACGGAGTGGACACCTCCGCCGTCCTCGNCGACGCATCCAAGACCGTCGCCACCATCATNGGCAAGNCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGATTTNGAGNNACCNAGNAGCCTGCCGNTTATGGCGNAGNTTGNTTTNCATTTGGTGGGNTGAACCNTTGTTTNTCAACANAGNAGNTTNACGTGTTGTCATTTNTCTCTATTNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 ------------------------------------------------------------ consensus_14601#0 ACAGCATGAACAGGAAAGCTATGGGCCTATCGTATCTGGAGGCCCAATAAGCTCCAAGGA 60 consensus_14601#2 ----------------GTTGAGTGCTGGCATTGCCTCTATCCTGGAGTCAAAGCTATCCA 44 consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ---------------------------------------GAGCAGAAAGAACATCAGGAA 21 consensus_14601#1 ------------------------------------------------------------ consensus_14601#0 TAGAGCCGGAGTGGGAGGCAGGGCAGCAGAGGCGCAGCCGAGCAGAAAGAACATCAGGAA 120 consensus_14601#2 TTCCCAAGGGCCGCTTCTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGGATGGA 104 consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ---CAGGGAGAAGACTAGAAGAGGGAGGGCGACTCAGACGACGACGACGAAGGAGTC--- 54 consensus_14601#6 -GAGAGGCTGAGGCCTG--AGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATC--- 54 consensus_14601#3 GGAGAGGCTGAGGCCTG--AGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATC--- 76 consensus_14601#1 -------------------------------ACG-AGGAATCAAGGGATTCGGAATC--- 25 consensus_14601#0 GGAGAGGCTGAGGCCTG--AGGGAGACGACGACGAGGGAATCAAGGGATTCGGAATC--- 175 consensus_14601#2 ACGGCAACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCA-AGATGCATGAAATCTA 163 consensus_14601#5 -----------------------------GGCCTGTGGCNTCATAGATGCATGAACCTAG 31 * * * * ** consensus_14601#4 GGAATCGGAGAAGGAA-GATGCCTTGCCTCAACGTGTCGACCAACGTGAACC--TGGATG 111 consensus_14601#6 GGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACC--TCGACG 112 consensus_14601#3 GGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACC--TCGACG 134 consensus_14601#1 GGAATCGGAGAAGGAAAGAT-CCTTGCCTCAACGTGTCCACCAACGTGAACC--TCGACG 82 consensus_14601#0 GGAATCGGAGAAGGAAAGATGCCTTGCCTCAACGTGTCCACCAACGTGAACC--TCGACG 233 consensus_14601#2 AGAATT-CCTAATATCTTGTTCATTGCCT--ATT-GGAGGACAATGCA-GTCGATGTAT- 217 consensus_14601#5 AGAATTGCCTAATATCTTGTTCCTTGCCT--ATNTGGAGGACCATGCNAGTCGATGTATG 89 **** ** * * ****** * * * * * * * * consensus_14601#4 GGGTGGACACCTCCGCCGTCCTCGCCTTTTCCTCCAAGACCGTCGCCACCATCATCGGCA 171 consensus_14601#6 GAGTGGACACCTCCGCCGTCCTCGNCGACGCATCCAAGACCGTCGCCACCATCATNGGCA 172 consensus_14601#3 GAGTGGACACCTCCGCCGTCCTCGCCGACGCATCCAAGACCGTCGCCACCATCATCGGCA 194 consensus_14601#1 GAGTGGACACCTCCGCCGTCCTCGCCGACGCATCCAAGACCGTCGCCACCATCATCGGCA 142 consensus_14601#0 GAGTGGACACCTCCGCCGTCCTCTCCGACGCATCCAAGACCGTCGCCACCATCATCGGCA 293 consensus_14601#2 CAGTTTAATGTCA-ACAAGAGTCACCGTGGAA--CTGGAAATATGCT-------TCTGAA 267 consensus_14601#5 CAGTGTAANGTCTCACCAGAGTCCCCGTGGGATACTGGAAATATGCT-------TCTGAA 142 ** * * ** * * ** ** * * * consensus_14601#4 AGCCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTA 231 consensus_14601#6 AGNCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGG-ATTTNGAGNNA 231 consensus_14601#3 AGCCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTA 254 consensus_14601#1 AGCCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTA 202 consensus_14601#0 AGCCCGAGGCCTATGTGATGGTTGTTCTCAAGGGTTCAGTGCCTATGGCATTTGGAGGTA 353 consensus_14601#2 TGCGGGGCTTTTAACTATTTGCCA-TGTTTAGATTT--G-GCAAATAACTATTTGCCACC 323 consensus_14601#5 TGCGGGGCTTTTAACTATTTGCCACTGTTTAGATTT--GCGCCAATAACTATTTGCCACC 200 * * ** * * * * * ** ** * ** ** ** * consensus_14601#4 CCCAGGAGCCTGCCGCT-TATGGCGA--GCTG-GTTTCCATT-GGAGGGCTGAACCCTGA 286 consensus_14601#6 CCNAGNAGCCTGCCGNT-TATGGCGNAGNTTG-NTTTNCATTTGGTGGGNTGAACCNTTG 289 consensus_14601#3 CCCAGGAGCCTGCCGCT-TATGGCGA--GCTG-GTTTCCATT-GGTGGGCTGAACCCTGA 309 consensus_14601#1 CCCAGGAGCCTGCCGCT-TATGGCGA--GCTG-GTTTCCATT-GGTGGGCTGAACCCTGA 257 consensus_14601#0 CCCAGGAGCCTGCCGCT-TATGGCGA--GCTG-GTTTCCATT-GGTGGGCTGAACCCTGA 408 consensus_14601#2 CCTATCTCAATGACA-TGTGGGTCCACA--TGTGTCTATGACGTGTGGGTTCAGCGGCAA 380 consensus_14601#5 CCTATCTCAATGACACTGTGGGTCCANCACTGTGTCTATGACGTGTGGGTTCAGCGNCCA 260 ** * ** * * * * * ** * * * *** * * * consensus_14601#4 C--GTCAACAA--GAAGCTGA-GTGCTGGCATT-GCCTCTATCCTGGAGTCAAAGCTGTC 340 consensus_14601#6 TTTNTCAACANAGNAGNTTNACGTGTTGTCATTTNTCTCTATTNC--------------- 334 consensus_14601#3 T--GTCAACAA--GAAGTTGA-GTGCTGGCATT-GCCTCTATCCTGGAGTCAAAGCTATC 363 consensus_14601#1 T--GTCAACAA--GAAGTTGA-GTGCTGGCATT-GCCTCTATCCTGGAGTCAAAGCTATC 311 consensus_14601#0 T--GTCAACAA--GAAGTTGA-GTGCTGGCATT-GCCTCTATCCTGGAGTCAAAGCTATC 462 consensus_14601#2 AAAGTTAATTGCCACATCTAA-ATGTGGCAAAT-GGTTAAATATCGGTCTGAATGCAATT 438 consensus_14601#5 AAAGTTAATTGCCACATCTAA-ATGTGGCCAAT-GGTTAAATATCGGTCTGAATNCCATT 318 * ** * * ** * * * * ** consensus_14601#4 ---CATTCCCAAGGGCCGCTTCTATCTCAAGTTCTACGATTCCAAACGCTCGGACTTTGG 397 consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ---CATTCCCAAGGGCCGCTTCTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGG 420 consensus_14601#1 ---CATTCCCAAGGGCCGCTTCTACCTCAAGTTCTACGATTCCAAGCGCTCGGACTTTGG 368 consensus_14601#0 ---CATTCCCAAGGGCCGCTTCTACCTCAAGTTCTACGATTCCAAG-GCCCATCGTGCAC 518 consensus_14601#2 TGGCATGCTTGAGTTGAGAGCTCTGTGTGTGTGTTTTGTCTATTAAGGTTTGTCCC-TGT 497 consensus_14601#5 TGGCATGCTTGAGTTGAGAGCTCTGTGTGTGTNTTTTGTCTATTAAGGTTTGTCCCCTGT 378 consensus_14601#4 ATGGAATGGCACCACCTTT-TAGGTTAAATGGTATGGCTTCAAGAATCTTGGAACCTACT 456 consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ATGGAACGGCACCACCTTT-TAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAA 479 consensus_14601#1 ATGGAACGGCACCACCTTT-TAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAA 427 consensus_14601#0 AAGAACATGCTCAATGTTTGCATGCTTTGCATCAAGAATAGATCAGTGTAAATGGGTCGT 578 consensus_14601#2 ATTAATGGGTGTGGGGGGC-AGGCCTAAATTCAGTG--TTTTAGCACAC-AGAATCAACC 553 consensus_14601#5 ATTAATGGGTGTGGGGGGC-AGGCCTAAATTCAGTG--TTTTAGCACCCCAGAATCAACC 435 consensus_14601#4 CCCTCCATCCCAAAATGTTTGACGCCGTTGACTTTTTTAAAAATGTTTGACCATTCGTCT 516 consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 CCTAAGAATTCCTAATATCTTGT-TCATTGCCTATTGGAGGACAATGCAGTCGATGTATC 538 consensus_14601#1 CCTAAGAATTCCTAATATCTTGT-TCATTGCCTATTGGAGGACAATGCAGTCGATGTATC 486 consensus_14601#0 CTGTTGCTTGTTTAATGTC--ATCGTATTGGTTTTTGCAGTTTAGTTTCTCTCTGCAGTT 636 consensus_14601#2 AAGGAAG--CCTTTGCTGCGAGGTCATTTCTTCCCTTGACCACAGCAGTACTAAAAA--- 608 consensus_14601#5 CAGGAACGCCCTTTGCTGCGAGGTC---------CAAAAAAAAAA--------------- 471 consensus_14601#4 TATTCAAAAAAAATTAAGTAATTATTAATTCTTTTCCTATCATTTGATTTATTGTTAAAT 576 consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 AGTTTAATGTCAACAAGAGTCACCGTGGAACTGGAAAAAAAAAAAAAAAAAACACT---- 594 consensus_14601#1 AGTTTAATGTCAACAAGAGTCACCGTGGAACTGGAAATATGCTTCTGAATGCGGGGCTTT 546 consensus_14601#0 TGGCAGTAAACCCTTGCCACAGCACGTATACTCTTCCATGCTAATTATGAGCAACTGAGC 696 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ATACTTTTA--------------------------------------------------- 585 consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 TAACTATTTGCCATGTTTAGATTTGGCAAATAACTATTTGCCACCCCTATCTCAATGACA 606 consensus_14601#0 ACTAATAAACCCCTTTTGATTTTCTTTTTATGTAGCGCTCGGACTTTGGATGGAACGGCA 756 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 TGTGGGTCCACATGTGTCTATGACGTGTGGGTTCAGCGGCAAAAAGTTAATTGCCACATC 666 consensus_14601#0 CCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCC 816 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 TAAATGTGGCAAATGGTTAAATATCGGTCTGAATGCAATTTGGCATGCTTGAGTTGAGAA 726 consensus_14601#0 TAATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAA 876 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 AAAAAAAAAAAAACACTGTCATGGCGTT-------------------------------- 754 consensus_14601#0 CAAGAGTCACCGTGGAACTGGAAATATGCTTCTGAATGCGGGGCTTTTAACTATTTGCCA 936 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 ------------------------------------------------------------ consensus_14601#0 TGTTTAGATTTGGCAAATAACTATTTGCCACCCCTATCTCAATGACATGTGGGTCCACAT 996 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 ------------------------------------------------------------ consensus_14601#0 GTGTCTATGACGTGTGGGTTCAGCGGCAAAAAGTTAATTGCCACATCTAAATGTGGCAAA 1056 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 ------------------------------------------------------------ consensus_14601#0 TGGTTAAATATCGGTCTGAATGCAATTCGGCATGCTTGAGTTGAGAGCTCTGTGTGTGTG 1116 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 ------------------------------------------------------------ consensus_14601#0 TTTTGTCTATTAAGGTTTGTCCCTGTATTAATGGGTGTGGGGGGCAGGCCTAAATTCAGT 1176 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 ------------------------------------------------------------ consensus_14601#0 GTTTTAGCACACAGAATCAACCAAGGAAGCCTTTGCTGCGAGGTCATTTCTTCCCTTGAC 1236 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 ------------------------------------------------------------ consensus_14601#0 CACAGCAGTACTATATTTGATGGCTAGAAGTAGGAACCACAAGTTAATTAGGGCTTTGCA 1296 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 ------------------------------------------------------------ consensus_14601#0 TTTGGTGGTTGTTGGTGCTAAAGTGGTTTGGTACTTGCATATCAAAGGGTCTTTGTCTGT 1356 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ------------------------------------------------------------ consensus_14601#6 ------------------------------------------------------------ consensus_14601#3 ------------------------------------------------------------ consensus_14601#1 ------------------------------------------------------------ consensus_14601#0 TTGGTTTGGTTCTTAAGCATGAAACTTTGCTGGTGTCTAGTTTTTGGTGTTGTGTTTGGC 1416 consensus_14601#2 ------------------------------------------------------------ consensus_14601#5 ------------------------------------------------------------ consensus_14601#4 ----------------------------------------------- consensus_14601#6 ----------------------------------------------- consensus_14601#3 ----------------------------------------------- consensus_14601#1 ----------------------------------------------- consensus_14601#0 CCAAGTAGGGTGCCTTGCTGCCTAATTTATTATGACCTCTCTTTTGT 1463 consensus_14601#2 ----------------------------------------------- consensus_14601#5 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||