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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1079 fasta sequence
[CCAAAAAAAAATTTTTTAAANGTTTGGGNTTTTAANCCCCCCCGGGTTNGGNAAATTGGTTTTGGGGGAAAAAAAAAANTTTGGAAATTTCCTTTGGTTTTCCCCCAAAAATTAAACCAAAAACCGGCCCTTTTTCCCTTGGGAAAAAAGNCCTTTGGTTTTATTTAATTTAATTCCCAAAAATTTTAATTTAAAAATTTTTTTGGTTTCCCATTTGGTTTCCCCCTNCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTTCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTTGGCCTTTGGGGGGGCCCCAATTCCCCTTGGGGGAAACCGCCCCCTTGGTTTTTTTGNAAAAACCAAAAAAAATTCCCTTATTCCCTTTCCCCCGNAAAAGGGCCATTTATTTATTTGGAAATTGNAATTTNCCCCNCCCCGTTTTNTTTTGGCCATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTTTTNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCCCCAAAGGGGGGGGGGGGGGCCCCCNGGGTTANCCCCCCAAATTTTCCCCCCCCCCCCAAANAAANTTGGAAANTTCCCTTTATTTTAAACCAAATTTTCCCCCCTNGGGGNCCCGTCCCCTTTTTTTTAACAAAAACCCTTTCCCTTTGNAACTNGGGGGGAAAAAAAANCCCCCTGGGGCGNTTTTTTNCCCCCCACCTTTTTAAATTTCCNCCCCCTTTGGGAANNAAAAAAATTCCCCCCCCCCCTTTTCCCCCCCNCNNCTTTNGGGGGGTTTTTTTTTTTCCCCAAAAAAAAAAGGGCCCNCCCNCCCCCNAATTTTTNCCCCCCTTNNCCCCCAAAAAAATTTTTTTNCCCCCCCCCCCCCCNNAAAATTNGGGGNNAAAAAATGGGGGGAAAANTTTTTTTTTNNCCCCCCTTTTAAATTTTTTTTTTNNTTTTNAAAAAATNCCCCCCCNTTTTTAAAANTTTTTTTTGNTTTTAAAAACCCCCCCCCCCCNTTTTTTTTTTAACCCCCCANTTAGGGGGCCCCAAAAATTC]
[+] EMBL AA752840 [CCAAAAAAAAATTTTTTAAANGTTTGGGNTTTTAANCCCCCCCGGGTTNGGNAAATTGGTTTTGGGGGAAAAAAAAAANTTTGGAAATTTCCTTTGGTTTTCCCCCAAAAATTAAACCAAAAACCGGCCCTTTTTCCCTTGGGAAAAAAGNCCTTTGGTTTTATTTAATTTAATTCCCAAAAATTTTAATTTAAAAATTTTTTTGGTTTCCCATTTGGTTTCCCCCTNCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTTCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTTGGCCTTTGGGGGGGCCCCAATTCCCCTTGGGGGAAACCGCCCCCTTGGTTTTTTTGNAAAAACCAAAAAAAATTCCCTTATTCCCTTTCCCCCGNAAAAGGGCCATTTATTTATTTGGAAATTGNAATTTNCCCCNCCCCGTTTTNTTTTGGCCATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTTTTNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCCCCAAAGGGGGGGGGGGGGGCCCCCNGGGTTANCCCCCCAAATTTTCCCCCCCCCCCCAAANAAANTTGGAAANTTCCCTTTATTTTAAACCAAATTTTCCCCCCTNGGGGNCCCGTCCCCTTTTTTTTAACAAAAACCCTTTCCCTTTGNAACTNGGGGGGAAAAAAAANCCCCCTGGGGCGNTTTTTTNCCCCCCACCTTTTTAAATTTCCNCCCCCTTTGGGAANNAAAAAAATTCCCCCCCCCCCTTTTCCCCCCCNCNNCTTTNGGGGGGTTTTTTTTTTTCCCCAAAAAAAAAAGGGCCCNCCCNCCCCCNAATTTTTNCCCCCCTTNNCCCCCAAAAAAATTTTTTTNCCCCCCCCCCCCCCNNAAAATTNGGGGNNAAAAAATGGGGGGAAAANTTTTTTTTTNNCCCCCCTTTTAAATTTTTTTTTTNNTTTTNAAAAAATNCCCCCCCNTTTTTAAAANTTTTTTTTGNTTTTAAAAACCCCCCCCCCCCNTTTTTTTTTTAACCCCCCANTTAGGGGGCCCCAAAAATTC]
consensusID : consensus_1461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence
[CCAAAAAAAAATTTTTTAAAAGTTTTGGNTTTTAANNCCCCCCCGGTTTGGGAAAATGGNTTTGGGGGAAAANAAAANGTTTGGGAAATTCCTTTGGGTTNCCCCCAAAAATTAAACCAAAAACCCGCCCTTTTTCCCTTGGGAAAAAAGNCCTTGGGTTTATTTAATTTAATTNCCAAAAATTTTTAATTAAAATTTTTTTGGGTTCCCATTGGGTTTCCCCTCCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTNCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTGGGCCTTGGGGGGGGGNCCCAATCCCCCCTGGGGGAAACCGCCCCCTTGGTTTNTTTGNAAAACCCAAAAAAAANTCCCTTAATCCCTTTTCCNCGAAAANGGGCCNTTTANTTTTTTGGAATTGGAAATTTCCCCCNCCCGTTTTNTTTTGGCCAATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTT]
[+] EMBL AA752838 [CCAAAAAAAAATTTTTTAAAAGTTTTGGNTTTTAANNCCCCCCCGGTTTGGGAAAATGGNTTTGGGGGAAAANAAAANGTTTGGGAAATTCCTTTGGGTTNCCCCCAAAAATTAAACCAAAAACCCGCCCTTTTTCCCTTGGGAAAAAAGNCCTTGGGTTTATTTAATTTAATTNCCAAAAATTTTTAATTAAAATTTTTTTGGGTTCCCATTGGGTTTCCCCTCCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTNCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTGGGCCTTGGGGGGGGGNCCCAATCCCCCCTGGGGGAAACCGCCCCCTTGGTTTNTTTGNAAAACCCAAAAAAAANTCCCTTAATCCCTTTTCCNCGAAAANGGGCCNTTTANTTTTTTGGAATTGGAAATTTCCCCCNCCCGTTTTNTTTTGGCCAATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1461#0 CCAAAAAAAAATTTTTTAAANGTTTGGGNTTTTAANCCCCCCCGGGTTNGGNAAATTGGT 60
consensus_1461#1 CCAAAAAAAAATTTTTTAAAAGTTTTGGNTTTTAANNCCCCCCCGGTTTGGGAAAATGGN 60
******************** **** ********** ****** **** ** *** ***
consensus_1461#0 TTTGGGGGAAAAAAAAAANTTTGGAAATTTCCTTTGGTTTTCCCCCAAAAATTAAACCAA 120
consensus_1461#1 TTTGGGGGAAAANAAAANGTTTGGGAAATTCCTTTGGGTTNCCCCCAAAAATTAAACCAA 120
************ **** ***** ** ********* ** *******************
consensus_1461#0 AAACCGGCCCTTTTTCCCTTGGGAAAAAAGNCCTTTGGTTTTATTTAATTTAATTCCCAA 180
consensus_1461#1 AAACCCGCCCTTTTTCCCTTGGGAAAAAAGNCCTTGGGTTT-ATTTAATTTAATTNCCAA 179
***** ***************************** ***** ************* ****
consensus_1461#0 AAATTTTAATTTAAAAATTTTTTTGGTTTCCCATTTGGTTTCCCCCTNCCCANGAAAATT 240
consensus_1461#1 AAATTTTTAATTAAAA-TTTTTTTGGGTTCCCATTGGGTTTCCCC-TCCCCANGAAAATT 237
******* * ****** ********* ******** ********* * ************
consensus_1461#0 TTGGAAANNAAATTTTGGGGGTTCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTTGGC 300
consensus_1461#1 TTGGAAANNAAATTTTGGGGGTNCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTGGGC 297
********************** ********************************* ***
consensus_1461#0 CTTTGGGGGGG-CCCCAATTCCCCTTGGGGGAAACCGCCCCCTTGGTTTTTTTGNAAAAA 359
consensus_1461#1 CTTGGGGGGGGGNCCCAATCCCCCCTGGGGGAAACCGCCCCCTTGGTTTNTTTGNAAAAC 357
*** ******* ****** **** ************************ *********
consensus_1461#0 CCAAAAAAAATTCCCTTATTCCCTTTCCCCCGNAAAAGGGCCATTTATTTATTTGGAAAT 419
consensus_1461#1 CCAAAAAAAANTCCCTTAATCCCTTTTCCNCGAAAANGGGCCNTTTANTTTTTTGGAA-T 416
********** ******* ******* ** ** *** ***** **** ** ******* *
consensus_1461#0 TGNAATTTNCCCCNCCCCGTTTTNTTTTGGCCA-TTTTCCCAAGGGGCCGNTTCCTTGGC 478
consensus_1461#1 TGGAAATTTCCCCCNCCCGTTTTNTTTTGGCCAATTTTCCCAAGGGGCCGNTTCCTTGGC 476
** ** ** **** ****************** **************************
consensus_1461#0 CCCTTGGGGGGTTTTTNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTC 538
consensus_1461#1 CCCTTGGGGGGTTT---------------------------------------------- 490
**************
consensus_1461#0 CCCAAAGGGGGGGGGGGGGGCCCCCNGGGTTANCCCCCCAAATTTTCCCCCCCCCCCCAA 598
consensus_1461#1 ------------------------------------------------------------
consensus_1461#0 ANAAANTTGGAAANTTCCCTTTATTTTAAACCAAATTTTCCCCCCTNGGGGNCCCGTCCC 658
consensus_1461#1 ------------------------------------------------------------
consensus_1461#0 CTTTTTTTTAACAAAAACCCTTTCCCTTTGNAACTNGGGGGGAAAAAAAANCCCCCTGGG 718
consensus_1461#1 ------------------------------------------------------------
consensus_1461#0 GCGNTTTTTTNCCCCCCACCTTTTTAAATTTCCNCCCCCTTTGGGAANNAAAAAAATTCC 778
consensus_1461#1 ------------------------------------------------------------
consensus_1461#0 CCCCCCCCCTTTTCCCCCCCNCNNCTTTNGGGGGGTTTTTTTTTTTCCCCAAAAAAAAAA 838
consensus_1461#1 ------------------------------------------------------------
consensus_1461#0 GGGCCCNCCCNCCCCCNAATTTTTNCCCCCCTTNNCCCCCAAAAAAATTTTTTTNCCCCC 898
consensus_1461#1 ------------------------------------------------------------
consensus_1461#0 CCCCCCCCCNNAAAATTNGGGGNNAAAAAATGGGGGGAAAANTTTTTTTTTNNCCCCCCT 958
consensus_1461#1 ------------------------------------------------------------
consensus_1461#0 TTTAAATTTTTTTTTTNNTTTTNAAAAAATNCCCCCCCNTTTTTAAAANTTTTTTTTGNT 1018
consensus_1461#1 ------------------------------------------------------------
consensus_1461#0 TTTAAAAACCCCCCCCCCCCNTTTTTTTTTTAACCCCCCANTTAGGGGGCCCCAAAAATT 1078
consensus_1461#1 ------------------------------------------------------------
consensus_1461#0 C 1079
consensus_1461#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||