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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1338 fasta sequence
[AGAACAAAGGTGGAGACTGCGATTCACTTCCACTCCCTTCCCCACTGCCTTCCTCCTCTCACTCTCACTCCCCCTGCGACCGCCGCCGAGAGGCCATGGCGGAGCAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCGCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGA-TTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGCCGGAGTACGTGCGCGCCTGCTGCGAGGCCAGCCTCGGCCGCCTCGGCGTCGACTACATCGACCTCTACTACCAGCACCGCGTCGACACCACCATCCCCATCGAGGACACGATTGGTGAGCTCAAGAAATTGGTGGAGGAGGGGAAGGTGAGGTACATTGGGCTATCGGAGGCGAGCCCTGACACCATCAGGCGAGCTCATGCCGTGCACCCAATCACTGCAGTTCAGATGGAGTGGTCTCTCTGGGCTCGTGACATTGAACCCGAAA-TTGTG-CCGCTCTGCAGGGAGTT-GGGCATTGGAATTGTT-CCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAATTGTCTGCTGAAT-CTAATTTGCAAGGACAT-CCACGATTTTCTGCTGAAAATTTGGAGAAGAATAAACAGCTTTATCTGAAAACGGAAGAGCTGGCCAAGAAGCACCAGTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGAAGATGTCGCTGGTGGAAGACAGTATACCTCATTTGCACATTACACCTGGAAGTATGCTGACACGCCAAAGAAGTAAAGCTAAAAAAATATTAGTATATCAAAGATATTGCCTGATTGCTATTCTCCCTGCGTATGTGCTGGATGGTGTTAAATGTATGCCTTGTGAATGCTCTCTGCGGTTCTAATAATGTACTGCCAATAACAAATTACTGCACTTCCACTCGCCTTTGAGAGCTTCACGAAACATATAAAACTTGCTTAAGCACAAAAAAAAAAAAAAAAAA]
[+] EMBL AK100460 [AGAACAAAGGTGGAGACTGCGATTCACTTCCACTCCCTTCCCCACTGCCTTCCTCCTCTCACTCTCACTCCCCCTGCGACCGCCGCCGAGAGGCCATGGCGGAGCAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCGCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGGCACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGA TTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGCCGGAGTACGTGCGCGCCTGCTGCGAGGCCAGCCTCGGCCGCCTCGGCGTCGACTACATCGACCTCTACTACCAGCACCGCGTCGACACCACCATCCCCATCGAGGACACGATTGGTGAGCTCAAGAAATTGGTGGAGGAGGGGAAGGTGAGGTACATTGGGCTATCGGAGGCGAGCCCTGACACCATCAGGCGAGCTCATGCCGTGCACCCAATCACTGCAGTTCAGATGGAGTGGTCTCTCTGGGCTCGTGACATTGAACCCGAAA TTGTG CCGCTCTGCAGGGAGTT GGGCATTGGAATTGTT CCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAATTGTCTGCTGAAT CTAATTTGCAAGGACAT CCACGATTTTCTGCTGAAAATTTGGAGAAGAATAAACAGCTTTATCTGAAAACGGAAGAGCTGGCCAAGAAGCACCAGTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGAAGATGTCGCTGGTGGAAGACAGTATACCTCATTTGCACATTACACCTGGAAGTATGCTGACACGCCAAAGAAGTAAAGCTAAAAAAATATTAGTATATCAAAGATATTGCCTGATTGCTATTCTCCCTGCGTATGTGCTGGATGGTGTTAAATGTATGCCTTGTGAATGCTCTCTGCGGTTCTAATAATGTACTGCCAATAACAAATTACTGCACTTCCACTCGCCTTTGAGAGCTTCACGAAACATATAAAAC ]
[+] EMBL C91827 [ GCGATTCACTTCCACTCCCTTCCCCACTGCCTTCCTCCTCTCACTCTCACTCCCCCTGCGACCGCCGCCGAGAGG CATGGCGGAG AAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGATGACGACGCCGGCGCCG CGTCATCGCGCACGGCTTNCGCCGCGGCGTCAACTTCTTCGACAACTNCGACGTTTACGGCCCCTTNG CAACGAGATCCTCCTCGGCAAGGCGt ]
[+] EMBL C25930 [ anTTCCACTCCCTTCCCCACTGCCTTCCTCCTCTCACTCTCACTCCCCCTGCGACCGCCGCCGAGA GNCATGGCGGA NAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCGCGCACGCNTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGCCCCCTCGCCAACNAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGNAGGTGCAGGTGGCCANCAAGTTCGGGA TTCGGCGGGGCG CGACGG GTGCGCG CGTGTGCGGCCGGCC GAGTACGTTCGC ]
[+] EMBL OSS2457A [ gcgnnCTTCCTCCTCTCACTCTCACTCCCCCTGCGACCGCCGCCGAGAGGCCATGGCGGA CAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCGCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGANGTCTANGGCCCCCTCGCC ]
[+] EMBL OSS1928A [ cactTTCCTCCTCTCACTCTCACTCCCCCTGCGACCGCCGNCGAGA GNCATGGCGGAG AAGCTCCACTGGCGCCGATNCCTCGAGTCAAGCTCGGCACCCGNGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGTCGACGTCATCNNNCACGTCTTCCGTCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGNCCCCTCGNCAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTNNCGNGGGAGAAGGTGCAGGTGGCCACCAAGNTCGGGATTTCGTCGTGG ]
[+] EMBL C91647 [ TCCTCCTCTCACTCTCACTCCCCCTGCGACCGCCGCCGAGAGG CATGGCGGA NAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCG CGTCATCGCGCACGCCTTCCGCCGCGGCGTCAACTTCTTCGACACCTCCGACGTCTACGGGCCCCTCGCCAACGAGATCCTCCTCGGCAAGGCGCTGAANCAGCTGCNGCGGGAACAGGTNCAGGTGGCCA CAANTTCGGGA TT GGCGGGGCGCCAAAGG GTTC CCCCGTNTTCGGCCGGCCGaatan ]
[+] EMBL CB678382 [ TCCTCTCACTCTCACTCCCCCTGCGACCGCCGCCGAGAGGCCATGGCGGAGCAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCGCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGA TTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGCCGGAGTACGTGCGCGCCTGCTGCGAGGCCAGCCTCGGCCGCCTCGGCGTCGACTACATCGACCTCTACTACCAGCACCGCGTCGACACCACCATCCCCATCGAGGACACGATTGGTGAGCTCAAGAAATTGGTGGAGGAGGGGAAGGTGAGGTACATTGGGCTATCGGAGGCGAGCCCTGACACCATCAGGCGAGCTCATGCCGTGCACCCAATCACTGCAGCTCAGATGGAGTGGTCTCTCTGGGCTCGTGACATTGAACCCGAAA TTGTG CCGCTCTGCAAGGAGTT GGGCATTGGAATTGTT CCCTACAGCCCTATCac ]
[+] EMBL CA753970 [ CTCTCACTCCCCCTGCGACCGCCGCCGAGAGGCCATGGCGGAGCAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCGCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGA TTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGCCGGAGTACGTGCGCGCCTGCTGCGAGGCCAGCCTCGGCCGCCTCGGCGTCGACTACATCGACCTCTACTACCAGCACCGCGTCGACACCACCATCCCCATCGAGGACACGATTGGTGAGCTCAAGAAATTGGTGGAGGAGGGGAAGGTGAGGTACATTGGGCTATCGGAGGCGAGCCCTGACACCATCAGGCGAGCTCATGCCGTGCACCCAATCACTGCAGNTCAGA ]
[+] EMBL CB643522 [ CCCCTGCGACCGCCGCCGAGAGGCCATGGCGGAGCAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCGCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGA TTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGCCGGAGTACGTGCGCGCCTGCTGCGAGGCCAGCCTCGGCCGCCTCGGCGTCGACTACATCGACCTCTACTACCAGCACCGCGTCGACACCACCATCCCCATCGAGGACACGATTGGTGAGCTCAAGAAATTGGTGGAGGAGGGGAAGGTGAGGTACATTGGGCTATCGGAGGCGAGCCCTGACACCATCAGGCGAGCTCATGCCGTGCACCCAATCACTGCAGTTCAGATGGAGTGGTCTCTCTGGGCTCGTGACATTGAACCCGAAA TTGTG CCGCTCTGCAGGGAGTT GGGCATTGGAATTGTT CCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAATTGTCTGCTGAAT CTAATTTGCAAGGACAT CCACGATTTTCTGCTGAAAATTTGGAGAAGAATAAAC ]
[-] EMBL CB643523 [ GACACGATTGGTGAGCTCAAGAAATTGGTGGAGGAGGGGAAGGTGAGGTACATTGGGCTATCGGAGGCGAGCCCTGACACCATCAGGCGAGCTCATGCCGTGCACCCAATCACTGCAGTTCAGATGGAGTGGTCTCTCTGGGCTCGTGACATTGAACCCGAAA TTGTG CCGCTCTGCAGGGAGTT GGGCATTGGAATTGTT CCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAATTGTCTGCTGAAT CTAATTTGCAAGGACAT CCACGATTTTCTGCTGAAAATTTGGAGAAGAATAAACAGCTTTATCTGAAAACGGAAGAGCTGGCCAAGAAGCACCAGTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGAAGATGTCGCTGGTGGAAGCCAGTATACCTCATTTGCACATTACACCTGGAAGTATGCTGCCCCGCCAAAGAAGTAAAGCTAAAAAAATATTAGTATATCAAAGATATTGCCTGATTGCTATTCTCCCTGCGTATGTGCTGGATGGTGTTAAATCTATTCCTTGTGAATGCTAGGGGCGGTTATAATA ]
[+] EMBL AU029622 [ TGGANTGGTCTCTCTGGGCTC TGAC TTGAACCCGAAATTTNTGCCCGCTCTGCAGGGAGTTGGGGCATTGG ATTGTTCCCCTACAGCCTTNTCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAATTGTCTGCTGAATCCTAATTTGCAAGGACATCCCACGATTTTCTGCTGAAAATTTGGAGAAGAATAAACAGCTTTATCTGAAAACGGAAGAGCTGGCCAAGAAGCACCAGTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAA CTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGAAGATGTCGCTGGTGGAAGACAGTATACCTCATTTGCACATTACACCTGGAAGTATGCTGACACGCCAAAGAAGTAAAGCTAAAAAAATATTAGTATATCAAAGATATTGCCTGATTGCTATTCT CCTGCGTATGTGCTGGATGGTGTTAAATGTATGCCTTGTGAATGCTCTCTGCGGTTCTAATAATGTACTGCCAATAACAAATTACTGCACTTCCACTCGCCTTTGAGAGCTTCACGAAACATATAAAACTTGCTTAAGCACAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094788 [ TGNCATTGAACCCGAAA TTGTG CCGCTCTCCAGGGAGTT GGGCATTNGAATTGTT CCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGNGAGGAGTGACAGAACAATTGTCTGCTGAAT CTAATTTGCAAGGACAT CCACGATTTTCTGCTGAAAATTTGGAGANGNATAAACAGCTTTATCTGAAAACGGAAGAGCTGGCCAAGAAGCACCAGTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGAAGATGTCGCTGGTGGAAGACAGTATACCTCATTTGCACATTACACCTGGAAGTATGCTGACACGCCAAAGAAGTAAAGCTAAAAAAATATTAGTATATCAAAGATATTGCCTGATTGCTATTCTCCCTGCGTATGTGCTGGATGGTGTTAAATGTATGCCTTGTGAATGCTCTCTGCGGTTCTAATAATGTACTGCCAATAACAAATTACTGCACTTCCAaaaaaaa ]
[+] EMBL AU075328 [ CACATTACACCTGGAAGTATGCTGNCACGCCAANGAAGTAAAGCTAAAAAAATATTAGTATATCAAAGATATTGCCTGATTGCTATTCTCCCTGCGTATGTGCTGGATGGTGTTAAATGTATGCCTTGTGAATGCTCTCTGCGGTTCTAATAATGTACTGCCAATAACANATTACTGCACTTCCACTCGCCTTTGAGAGCTTCACGAAACATATAAAACTTGCTTAAGCACAAACAAAAAAAA ]
consensusID : consensus_14621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 927 fasta sequence
[ACACTCTCACTCCCCCTGCGACCGCCGCCGAGAGGCCATGGCGGAGCAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCGCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTACGGGATTCGGCGGGGCGCCAACGGTGTGCGCGCCGAGTGCGGTCGGACGGAGACGAGCGCTCCTGCTGCGAGGCCAGCCTCTGTCGTCTTAGTCTTTACTACATTATCCATACTCCCGATTACATAGATTCATGATATATTCTGTTATTGTCCTCTTTCTTTTTGTGTTTTGTTCGTATTCGTTGATCTGACCAACCATATATTGTATTTTTGTCATCGCGCACGACCCGCATTTCGTTGGCATATCACGCCGACGTTTTGCAGCTCTTCACAGTCTTCACGTTCTTTCACAATCTAATGTATTTATTACCTCTCATTTATTGAAATCTACACTTTAACTTTATTTCTTACTATTGCTTGCTCTTTTTTTTATCCTGTATCCATTCATTTACACTTTTCCCTTCTTATATTCATCCCTTCTTTACCGTTCGCTTTTCTTAGTGTGTGCTTTATATTCACCGTGTTTTCTAATTTAATATCATTTATCATTTATATTTATACTCTCCTTTAATTCCCTCATTGTTGCGGCTTAGCTTATATTATATTTTCTCATTTTTTTATTTATTTTGGCTTTATATTTGTTTGTATTTTAATCTGATATGTTATTTATTA]
[+] EMBL BE040954 [ACACTCTCACTCCCCCTGCGACCGCCGCCGAGAGGCCATGGCGGAGCAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCGCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTACGGGATTCGGCGGGGCGCCAACGGTGTGCGCGCCGAGTGCGGTCGGACGGAGACGAGCGCTCCTGCTGCGAGGCCAGCCTCTGTCGTCTTAGTCTTTACTACATTATCCATACTCCCGATTACATAGATTCATGATATATTCTGTTATTGTCCTCTTTCTTTTTGTGTTTTGTTCGTATTCGTTGATCTGACCAACCATATATTGTATTTTTGTCATCGCGCACGACCCGCATTTCGTTGGCATATCACGCCGACGTTTTGCAGCTCTTCACAGTCTTCACGTTCTTTCACAATCTAATGTATTTATTACCTCTCATTTATTGAAATCTACACTTTAACTTTATTTCTTACTATTGCTTGCTCTTTTTTTTATCCTGTATCCATTCATTTACACTTTTCCCTTCTTATATTCATCCCTTCTTTACCGTTCGCTTTTCTTAGTGTGTGCTTTATATTCACCGTGTTTTCTAATTTAATATCATTTATCATTTATATTTATACTCTCCTTTAATTCCCTCATTGTTGCGGCTTAGCTTATATTATATTTTCTCATTTTTTTATTTATTTTGGCTTTATATTTGTTTGTATTTTAATCTGATATGTTATTTATTA]
consensusID : consensus_14621#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[GAATGGCCCTNTCCAGGATTGGGCATGGATTGGTCCCCTACAGCCCTTTCNCCCCCGGGTTTTTCGAGGAGAGGATTACGAACAATTGTCTGCTGAATCTAATNTGGCAAGGACATCCACGATGTGTCGTGCTGAAAATTTGGAGAAGAATAACCACGCTGTTATCTGAAATACGGGAGAGACTGGCCACAGAAGCAACCCTGTGTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCCATACCAGGACCACCCAGATTAAAACCTAGATGCCAACACTTGACTCCTTATAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCNGGTACGCGAAGAAGATGTCGCTGGTGGAAGACAGTATACCTCATTTGCACCTTACACCCTGGAAGTATGCTGACACGCCCCAAGAAGNAAAGCTAAAAAAATATTAGTATATCCAAGATATTGCCTGATTGCTATTCTCCCTGCGTATGTGCTGGATGGTGTTAAATGTATGCCCTTGGGAAGTGCGTCGTCTGCGGGTGTCTAATAAGTGGTACGNGCCCATAACCAANTACTGCCAAAA]
[+] EMBL BI806266 [GAATGGCCCTNTCCAGGATTGGGCATGGATTGGTCCCCTACAGCCCTTTCNCCCCCGGGTTTTTCGAGGAGAGGATTACGAACAATTGTCTGCTGAATCTAATNTGGCAAGGACATCCACGATGTGTCGTGCTGAAAATTTGGAGAAGAATAACCACGCTGTTATCTGAAATACGGGAGAGACTGGCCACAGAAGCAACCCTGTGTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCCATACCAGGACCACCCAGATTAAAACCTAGATGCCAACACTTGACTCCTTATAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCNGGTACGCGAAGAAGATGTCGCTGGTGGAAGACAGTATACCTCATTTGCACCTTACACCCTGGAAGTATGCTGACACGCCCCAAGAAGNAAAGCTAAAAAAATATTAGTATATCCAAGATATTGCCTGATTGCTATTCTCCCTGCGTATGTGCTGGATGGTGTTAAATGTATGCCCTTGGGAAGTGCGTCGTCTGCGGGTGTCTAATAAGTGGTACGNGCCCATAACCAANTACTGCCAAAA]
consensusID : consensus_14621#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence
[CTGAGATCCGGTTCGAGCTCGTGCCGAATTCGGCACGAGCGGCACGAGCGGCTTTAGGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCNCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGNCCCCTCGCCAACGANATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCANGTGCANGTGGCCACCAAGTTCGGGATTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGCCGGAGTACGTGCGCGCCTGCTGCGAAGCCACCTCGGCCGCCTCGGCGTCGACTACATCNNCNTCTACTNCCAGCACCGCGTCGACACCACCATCCCCATCGAGGACACGATTGGTGAGCTCAAGAAAATTGGTGGAGGAGGGGAAGGTGAAGTACATTGGGGCTATCGGANGNGAGCCCTGANNCCATCAGGNNAACTCANGCGTGCACC]
[+] EMBL AA753238 [CTGAGATCCGGTTCGAGCTCGTGCCGAATTCGGCACGAGCGGCACGAGCGGCTTTAGGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCNCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGNCCCCTCGCCAACGANATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCANGTGCANGTGGCCACCAAGTTCGGGATTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGCCGGAGTACGTGCGCGCCTGCTGCGAAGCCACCTCGGCCGCCTCGGCGTCGACTACATCNNCNTCTACTNCCAGCACCGCGTCGACACCACCATCCCCATCGAGGACACGATTGGTGAGCTCAAGAAAATTGGTGGAGGAGGGGAAGGTGAAGTACATTGGGGCTATCGGANGNGAGCCCTGANNCCATCAGGNNAACTCANGCGTGCACC]
consensusID : consensus_14621#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence
[GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGAAGATGTCGCTGGTGGAAGACAGTATACCTCATTTGCACATTACACCTGGAAGTATGCTGACACGCCAAAGAAGTAAAGCTAAAAAAATATTAGTATATCAAAGATATTGCCTGATTGCTATTCTCCCTGCGTATGTGCTGGATGGTGTTAAATGTATGCCTTGTGAATGCTCTCTGCGGTTCTAATAATGTACTGCCAATAACAAAAAAAAAAAAAAAAAACTCGAGTTTTTT]
[+] EMBL CF324954 [GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGAAGATGTCGCTGGTGGAAGACAGTATACCTCATTTGCACATTACACCTGGAAGTATGCTGACACGCCAAAGAAGTAAAGCTAAAAAAATATTAGTATATCAAAGATATTGCCTGATTGCTATTCTCCCTGCGTATGTGCTGGATGGTGTTAAATGTATGCCTTGTGAATGCTCTCTGCGGTTCTAATAATGTACTGCCAATAACAAAAAAAAAAAAAAAAAACTCGAGTTTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 AGAACAAAGGTGGAGACTGCGATTCACTTCCACTCCCTTCCCCACTGCCTTCCTCCTCTC 60
consensus_14621#1 ------------------------------------------------------------
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 ACTCTCACTCCCCCTGCGACCGCCGCCGAGAGGCCATGGCGGAGCAAGCTCCACTGGCGC 120
consensus_14621#1 ------------------------------------------------------------
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 CGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGT 180
consensus_14621#1 ------------------------------------------------------------
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 GCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCA 240
consensus_14621#1 ------------------------------------------------------------
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 TCGCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGCCCCC 300
consensus_14621#1 ------------------------------------------------------------
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 TCGCCAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGG 360
consensus_14621#1 ------------------------------------------------------------
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 TGGCCACCAAGTTCGGGATTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGC 420
consensus_14621#1 ------------------------------------------------------------
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 CGGAGTACGTGCGCGCCTGCTGCGAGGCCAGCCTCGGCCGCCTCGGCGTCGACTACATCG 480
consensus_14621#1 ------------------------------------------------------------
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 ACCTCTACTACCAGCACCGCGTCGACACCACCATCCCCATCGAGGACACGATTGGTGAGC 540
consensus_14621#1 ------------------------------------------------------------
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 TCAAGAAATTGGTGGAGGAGGGGAAGGTGAGGTACATTGGGCTATCGGAGGCGAGCCCTG 600
consensus_14621#1 ------------------------------------------------------------
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 ACACCATCAGGCGAGCTCATGCCGTGCACCCAATCACTGCAGTTCAGATGGAGTGGTCTC 660
consensus_14621#1 ------------------------------------------------------------
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 -----------------------------GAATGGCCCTNTCCAGGATTGGGCAT-GGAT 30
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 TCTGGGCTCGTGACATTGAACCCGAAATTGTGCCGCTCTGCAGGGAGTTGGGCATTGGAA 720
consensus_14621#1 -------------------------------------------------------ACACT 5
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 TGGTCCCCTACAGCCCTTTCNCCCCCGGGTTTTTCGAGGAGAGGATTACGA----ACAAT 86
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 TTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAAT 780
consensus_14621#1 CTCACTCCCCCTGCGACCGCCGCCGAGAGGCCATGGCGGAGCAAGCTCCACTGGCGCCGA 65
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 TGTCTGCTGAATCTAATNTGGCAAGGACATCCACGATGTGTCGTGCTGAAAATTTGGAGA 146
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 TGTCTGCTGAATCTAATTTG-CAAGGACATCCACGATTT--TCTGCTGAAAATTTGGAGA 837
consensus_14621#1 TGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAG-GTGTCCAAGCTGGGGTTCGGGTGC 124
consensus_14621#3 ----------------------CTGAGATCCGGTTCGAGCTCGTGCCGAA-TTCG---GC 34
consensus_14621#2 AGAATAACCACGCTGTTATCTGAAATACGGGAGAGACTGGCCACAGAAGCAACCCTG--T 204
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 AGAATAA--ACAGCTTTATCTGAAA-ACGGAAGAG-CTGGCCA-AGAAGCACCA------ 886
consensus_14621#1 ATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATC 184
consensus_14621#3 ACGAGCGGCACGAGCGGCTTTAG---GCCGCTCGACGACGACGCCGGCGCCGCCGTCATC 91
consensus_14621#2 GTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCC 264
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 GTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCC 946
consensus_14621#1 GCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGCCCCCTC 244
consensus_14621#3 NCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGNCCCCTC 151
consensus_14621#2 CATACCAGGA-CCACCCAGATTAAAA-CCTAGATGCCAACACTTGACTCCTTATAAGGTG 322
consensus_14621#4 -------GAA-CAACCAAGATAAAAAACCTAGATGCCAACA-TTGACTCCTTA-AAGGTG 50
consensus_14621#0 AATACCAGGAACAACCAAGATAAAAAACCTAGATGCCAACA-TTGACTCCTTA-AAGGTG 1004
consensus_14621#1 GCCAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTG 304
consensus_14621#3 GCCAACGANATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCANGTGCANGTG 211
* * ** * * * * * * * * * ***
consensus_14621#2 AACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCNGGTACGCGAAGAAGATGTCGCT 382
consensus_14621#4 AACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGAAGATGTCGCT 110
consensus_14621#0 AACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGAAGATGTCGCT 1064
consensus_14621#1 GCCACCAAGTACGG-GATTCGGCGGGG--CGCCAACGGTGTGCGCGCCGA--GTGCGGTC 359
consensus_14621#3 GCCACCAAGTTCGG-GATTCGGCGGGG--CGCCGACGGCGTGCGCGCCGT--GTGCGGCC 266
* ** * * ** * * * * * * ** **** * ** *
consensus_14621#2 GGTGGAAGACAGTATACCTCATTTGCACCTTACACCCTGGAAGTATGCTGACACGCCCCA 442
consensus_14621#4 GGTGGAAGACAGTATACCTCATTTGCACATTACACC-TGGAAGTATGCTGACACGCCA-A 168
consensus_14621#0 GGTGGAAGACAGTATACCTCATTTGCACATTACACC-TGGAAGTATGCTGACACGCCA-A 1122
consensus_14621#1 GGACGGAG-ACGAGCGCTCCTGCTGCGAGGCCAGCCTCTGTCGTCTTAGTCTTTACTACA 418
consensus_14621#3 GGCCGGAGTACGTGCGCGCCTGCTGCGAAGCCA-CCTCGGCCGCCTCGGCGTCGACTACA 325
** * ** * * * *** ** * * * * *
consensus_14621#2 AGAAGNAAAGCTAAAAAAATATTAGTATATCCAAGATATTGCCTGATTGCTATTCTCCCT 502
consensus_14621#4 AGAAGTAAAGCTAAAAAAATATTAGTATATCAAAGATATTGCCTGATTGCTATTCTCCCT 228
consensus_14621#0 AGAAGTAAAGCTAAAAAAATATTAGTATATCAAAGATATTGCCTGATTGCTATTCTCCCT 1182
consensus_14621#1 TTATCCA-TACTCCCGATTACATAG---ATTCATGATATATTCTG-TTATTGTCCTCTTT 473
consensus_14621#3 TCNNCNTCTACTNCCAGCACCGCG-----TCGACACCACCATCC--CCATCGAGGACACG 378
** * * * * *
consensus_14621#2 GCGTATGTGCTGGATGGTGTTAAATGTATGCCCTTGGGAAGTGCGTCGTCTGCGGGTGTC 562
consensus_14621#4 GCGTATGTGCTGGATGGTGTTAAATGTATGCC-TTGTGAA---TGCTCTCTGCGGTT--C 282
consensus_14621#0 GCGTATGTGCTGGATGGTGTTAAATGTATGCC-TTGTGAA---TGCTCTCTGCGGTT--C 1236
consensus_14621#1 CTTTTTGTGTTTTGTTCGTATTCGTTGATCTGACCAACCATATATTGTATTTTTGTCATC 533
consensus_14621#3 ATTGGTGAGCTCAAGA-AAATTGGTGGAGGAGGGGAAG-GTGAAGTACATTGGGGCTATC 436
** * * * * * * * *
consensus_14621#2 TAATAAGTGGTACGNGCCCATAACCAANTACTGCCAAAA--------------------- 601
consensus_14621#4 TAATAAT--GTAC-TGCCAATAACAAAAAAAAAAAAAAAAAACTCGAGTTTTTT------ 333
consensus_14621#0 TAATAAT--GTAC-TGCCAATAACAAATTACTGC-ACTTCCACTCGCCTTTGAGAGCTTC 1292
consensus_14621#1 GCGCACGA-CCCGCATTTCGTTGGCATATCACGCCGACGTTTTGCAGCTCTTCACAGTCT 592
consensus_14621#3 GGANGNGAGCCCTGANNCCATCAGGNNAACTCANGCGTGCACC----------------- 479
*
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 ACGAAACATATAAAACTTGCTTAAGCACAAAAAAAAAAAAAAAAAA-------------- 1338
consensus_14621#1 TCACGTTCTTTCACAATCTAATGTATTTATTACCTCTCATTTATTGAAATCTACACTTTA 652
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 ------------------------------------------------------------
consensus_14621#1 ACTTTATTTCTTACTATTGCTTGCTCTTTTTTTTATCCTGTATCCATTCATTTACACTTT 712
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 ------------------------------------------------------------
consensus_14621#1 TCCCTTCTTATATTCATCCCTTCTTTACCGTTCGCTTTTCTTAGTGTGTGCTTTATATTC 772
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 ------------------------------------------------------------
consensus_14621#1 ACCGTGTTTTCTAATTTAATATCATTTATCATTTATATTTATACTCTCCTTTAATTCCCT 832
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 ------------------------------------------------------------
consensus_14621#4 ------------------------------------------------------------
consensus_14621#0 ------------------------------------------------------------
consensus_14621#1 CATTGTTGCGGCTTAGCTTATATTATATTTTCTCATTTTTTTATTTATTTTGGCTTTATA 892
consensus_14621#3 ------------------------------------------------------------
consensus_14621#2 -----------------------------------
consensus_14621#4 -----------------------------------
consensus_14621#0 -----------------------------------
consensus_14621#1 TTTGTTTGTATTTTAATCTGATATGTTATTTATTA 927
consensus_14621#3 -----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||