These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1913 fasta sequence [GGGCCATTCGCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCTGTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGACGCGCATCAGAATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCATGATAAGTGACAAAAGCTACTTTTCTCAGTAGCGAGGGCAATTGAAGCGGCCTGATCATGCAGACCTAAGATACAAATGCAGAACTTATGCCCGACTTCTGCAGCACTTGAAGAGTCTGGACAAGAGCTGTTTAGGCCCCTTAAGGAAAGCATACTGTCATTCTCTTAATTTATTGCTTCGTCGAGAGGCACGTGAATTCGCCAATGAACTTCGAGCAAGCACGAAAGCACCTAAAAATCCAGCTGTTTGGCTTGAAGGTTCTAATAGTGGCGGTCAGAATGGCAGTAGTGCTGACACTTCAACAGTATCTGATGCATATTCAAAGATGCTAACAATATTTATCCCACTTCTTGTGGATGAGAGTTCCTTTTTTGCACATTTTATGTGCTTTGAAGTACCTGCCCTTGTTCCAGCTGGTGCTCCGAATGCTAAAAGTAGATCAGGGGGAAATGACCCAGATGATGACCTGAATCTTATGGATCCAGATGGCAATGATCTCAAACCAGATGATACATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTTGCATTTCAATGCATGGGATTACAGAACGATACCTGTCCGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCAGACTACTTCATGACTTGGAGTCAAGAATATCAACACAGTTCAGCAGGTTTATTGATGAAGCGTGCCATCAAATCGAGCGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAGTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG-TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC-CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG----TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACACCTGTTTGGATAAAATGTGCCCGGTTACCGTGATGCCAAAAAAAAAAAAAGA] [+] EMBL CB650310 [GGGCCATTCGCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCTGTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGACGCGCATCAGAATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCATGATAAGTGACAAAAGCTACTTTTCTCAGTAGCGAGGGCAATTGAAGCGGCCTGATCATGCAGACCTAAGATACAAATGCAGAACTTATGCCCGACTTCTGCAGCACTTGAAGAGTCTGGACAAGAGCTGTTTAGGCCCCTTAAGGAAAGCATACTGTCATTCTCTTAATTTATTGCTTCGTCGAGAGGCACGTGAATTCGCCAATGAACTTCGAGCAAGCACGAAAGCACCTAAAAATCCAGCTGTTTGGCTTGAAGGTTCTAATAGTGGCGGTCAGAATGGCAGTAGTGCTGACACTTCAACAGTATCTGATGCATATTCAAAGATGCTAACAATATTTATCCCACTTCTTGTGGATGAGAGTTCCTTTTTTGCACATTTTATGTGCTTTGAAGTACCTGCCCTTGTTCCAGCTGGTGCTCCGAATGCTAAAAGTAGATCAGGGGGAAATGACCCAGATGATGACCTGAATCTTATGGATCCAGATGGCAATGATCTCAAACCAGATGATACATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTTGCATT ] [+] EMBL CA767022 [ ggacgAGACAAGGGGGAAATGACCCAGATGATGACCTGAATCTTATGGATCCAGATGGCAATGATCTCAAACCAGATGATACATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTTGCATTTCAATGCATGGGATTACAGAACGATACCTGTCCGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCAGACTACTTCATGACTTGGAGTCAAGAATATCAACACAGTTCAGCAGGTTTATTGATGAAGCGTGCCATCAAATCGAGCGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAGTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGNCTTCCAGAACAGTCTTTATGACTTGGCTAATGGTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGNTCACTTATTTATCTTCAATTCGAGAGGCTGGTTCAGNTTTTCTCGNAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAAATTCNTTT CAGCTAGGGCTGGCAAAAACTGATCTAAGGAGGGNGATCNAATCCAGNTTTTNTGGGATTGACAAGTC ATCGG GNCNTGTTTAGGAGGT CNANANA ACTGACTT TGAAGAG TGTTnctta ] [+] EMBL CB632178 [ GATGCT TATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGGAAGACTTCTCCGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTTGCATTTCAATGCATGGGATTACAGAACGATACCTGTCCGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCAGACTACTTCATGACTTGGAGTCAAGAATATCAACACAGTTCAGCAGGTTTATTGATGAAGCGTGCCATCAAATCGAGCGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAGTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTG ] [-] EMBL CB650311 [ AGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAGTCAGCACAATGTTCACANCTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATG ] [+] EMBL CF317171 [ TCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGA ] [-] EMBL CB644564 [ GTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTAAGGGTCTCAATGTAACAACACCTG TTGGATAAAAataaaa ] [-] EMBL CB652867 [ ACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACACCTGTT ] [-] EMBL CB651176 [ ATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACACCTGTTTAAGGAAAATGTGCCCGGTTACCGTGA ] [-] EMBL CB632179 [ CAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAGTATATATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTGTCTCAATGTAACAACACGGGTTTGGATATAATGTGCCCGGTTACCGTGATG ] [-] EMBL CB672577 [ CAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACACCTGTTTGGATAAAATGTGCCCGGTTACCGTGATGCCAAAAAAAAAAAAAGA] [-] EMBL CB663387 [ TGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACCCCc ] [-] EMBL CB653974 [ GTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACGCCTGTTTGGATAAAATGTGCCCGGTTACCGTG ] [-] EMBL CF317172 [ AGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGCNCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACACCTGTTTGGATAAAATGTGCCCGGTTACCGTGATGCCATTTACGAAAAAA ] consensusID : consensus_14641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 681 fasta sequence [TGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACA-CTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGCCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAGTTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAGTATATATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTGTCTCAATGTAACAACA-CCTGTTTGGATAAAAAAAAAAAAAAA] [-] EMBL CA758970 [TGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACA CTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGCCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAGTTCATTTGATTGAATTTTACACATCCGCTTTTGCTAGGCCTTATTAGAG TATATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTGTCTCAATGTAACAACA CCTGTTTGGATAAAGAAAAAAAAAAA] [+] EMBL BM418700 [ AGGGTGATCAAATCCCGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACCTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGCCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAGTATATATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTGTCTCAATGTAACAACA CCTGTTTGGATATAAAAAA ] [+] EMBL BI812559 [ TGTATAGGAGGTTACAGAAGACA CTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGCCATGTATCATTTCACAGT CAGTAGCTATCTATATTCA TTCATTTGATTGAATTTTACACATCCACTTTTGCTA GCCTTATTAGAGTATATATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTGTCTCAATGTAACAACACCCTGTTTGGATAAAAAAAAAA ] consensusID : consensus_14641#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [TAGGGAGGGTTCCACGAAGCCCGTGACTTTCTGGATGAGTTGTGTTCCGCTCACTGTGGGGACACAGTCTCAGAAAGAGTTTTTTGGACAAGTCGAGAGCTTCGTTCAGATGGTGACACGGATCTATGGAAATGAGCCCACATCATGTCGGTTGCTGATATGAAAGATGGTCCTTGCTAACTTCTAGATATAAGTCCCGCCCCC] [+] EMBL BI808989 [TAGGGAGGGTTCCACGAAGCCCGTGACTTTCTGGATGAGTTGTGTTCCGCTCACTGTGGGGACACAGTCTCAGAAAGAGTTTTTTGGACAAGTCGAGAGCTTCGTTCAGATGGTGACACGGATCTATGGAAATGAGCCCACATCATGTCGGTTGCTGATATGAAAGATGGTCCTTGCTAACTTCTAGATATAAGTCCCGCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14641#0 GGGCCATTCGCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCTG 60 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 TTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGACGCGCATCAG 120 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 AATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCATGATAAGTGACAAAAGCTACT 180 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 TTTCTCAGTAGCGAGGGCAATTGAAGCGGCCTGATCATGCAGACCTAAGATACAAATGCA 240 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 GAACTTATGCCCGACTTCTGCAGCACTTGAAGAGTCTGGACAAGAGCTGTTTAGGCCCCT 300 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 TAAGGAAAGCATACTGTCATTCTCTTAATTTATTGCTTCGTCGAGAGGCACGTGAATTCG 360 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 CCAATGAACTTCGAGCAAGCACGAAAGCACCTAAAAATCCAGCTGTTTGGCTTGAAGGTT 420 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 CTAATAGTGGCGGTCAGAATGGCAGTAGTGCTGACACTTCAACAGTATCTGATGCATATT 480 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 CAAAGATGCTAACAATATTTATCCCACTTCTTGTGGATGAGAGTTCCTTTTTTGCACATT 540 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 TTATGTGCTTTGAAGTACCTGCCCTTGTTCCAGCTGGTGCTCCGAATGCTAAAAGTAGAT 600 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 CAGGGGGAAATGACCCAGATGATGACCTGAATCTTATGGATCCAGATGGCAATGATCTCA 660 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 AACCAGATGATACATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCG 720 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 ATGGAATCCAGGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGC 780 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 GTTGCATTTCAATGCATGGGATTACAGAACGATACCTGTCCGGTCAGAAAGCTGATGCTG 840 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 CAGGATTTGTTCGCAGACTACTTCATGACTTGGAGTCAAGAATATCAACACAGTTCAGCA 900 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 GGTTTATTGATGAAGCGTGCCATCAAATCGAGCGCAATGAAAGAAATGTACGGCAGACAG 960 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 GAATACTAGCCTACATTCCCAGATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTC 1020 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 AAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAGTCAGCACAATGTTCA 1080 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 CAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGA 1140 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 ATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAA 1200 consensus_14641#1 ------------------------------------------------------------ consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 AATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCAC 1260 consensus_14641#1 ----------TGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCAC 50 consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 TTATTTATCTTCAATTCGAGAGGCTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACAT 1320 consensus_14641#1 TTATTTATCTTCAATTCGAGAGGCTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACAT 110 consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 ACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGA 1380 consensus_14641#1 ACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGA 170 consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 GGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGT 1440 consensus_14641#1 GGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGT 230 consensus_14641#2 --------------------------------------------------TAGGGAGGGT 10 ** * *** consensus_14641#0 TACA-GAAGACACTGACTTCT--GATGAGTTGTTTCCT--TCACTGTGGG-ACA-AGTGC 1493 consensus_14641#1 TACA-GAAGACACTGACTTCT--GATGAGTTGTTTCCT--TCACTGTGGG-ACA-AGTGC 283 consensus_14641#2 TCCACGAAGCCCGTGACTTTCTGGATGAGTTGTGTTCCGCTCACTGTGGGGACACAGTCT 70 * ** **** * ****** ********** * * ********** *** *** consensus_14641#0 AAGAAAGAGTTTTT-GGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGG 1552 consensus_14641#1 AAGAAAGAGTTTTT-GGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGG 342 consensus_14641#2 CAGAAAGAGTTTTTTGGACAAGT-CGAGAGCTTCGTTCAGATGGTGACACGGATCTATGG 129 ************* ******** ************************ *********** consensus_14641#0 AAATGAGCCCA--TCATGTCGGTTGCTGATATGAAAGATG-TCCTTGCTAACTTCTAGAT 1609 consensus_14641#1 AAATGAGCCCA--TCATGTCGGTTGCTGATATGAAAGATG-TCCTTGCTAACTTCTAGAT 399 consensus_14641#2 AAATGAGCCCACATCATGTCGGTTGCTGATATGAAAGATGGTCCTTGCTAACTTCTAGAT 189 *********** *************************** ******************* consensus_14641#0 ATAAGTACAGCGCCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTG 1669 consensus_14641#1 ATAAGTACAGCGCCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAGTTCATTTG 459 consensus_14641#2 ATAAGTCCCGCCCCC--------------------------------------------- 204 ****** * ** ** consensus_14641#0 ATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAGTATATATATATAT----GT 1725 consensus_14641#1 ATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAGTATATATATATATATATGT 519 consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 TCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTA 1785 consensus_14641#1 TCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTA 579 consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 AACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTG 1845 consensus_14641#1 AACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTG 639 consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 TCTCAATGTAACAACACCTGTTTGGATAAAATGTGCCCGGTTACCGTGATGCCAAAAAAA 1905 consensus_14641#1 TCTCAATGTAACAACACCTGTTTGGATAAAAAAAAAAAAAAA------------------ 681 consensus_14641#2 ------------------------------------------------------------ consensus_14641#0 AAAAAAGA 1913 consensus_14641#1 -------- consensus_14641#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||