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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1913 fasta sequence
[GGGCCATTCGCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCTGTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGACGCGCATCAGAATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCATGATAAGTGACAAAAGCTACTTTTCTCAGTAGCGAGGGCAATTGAAGCGGCCTGATCATGCAGACCTAAGATACAAATGCAGAACTTATGCCCGACTTCTGCAGCACTTGAAGAGTCTGGACAAGAGCTGTTTAGGCCCCTTAAGGAAAGCATACTGTCATTCTCTTAATTTATTGCTTCGTCGAGAGGCACGTGAATTCGCCAATGAACTTCGAGCAAGCACGAAAGCACCTAAAAATCCAGCTGTTTGGCTTGAAGGTTCTAATAGTGGCGGTCAGAATGGCAGTAGTGCTGACACTTCAACAGTATCTGATGCATATTCAAAGATGCTAACAATATTTATCCCACTTCTTGTGGATGAGAGTTCCTTTTTTGCACATTTTATGTGCTTTGAAGTACCTGCCCTTGTTCCAGCTGGTGCTCCGAATGCTAAAAGTAGATCAGGGGGAAATGACCCAGATGATGACCTGAATCTTATGGATCCAGATGGCAATGATCTCAAACCAGATGATACATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTTGCATTTCAATGCATGGGATTACAGAACGATACCTGTCCGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCAGACTACTTCATGACTTGGAGTCAAGAATATCAACACAGTTCAGCAGGTTTATTGATGAAGCGTGCCATCAAATCGAGCGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAGTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG-TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC-CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG----TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACACCTGTTTGGATAAAATGTGCCCGGTTACCGTGATGCCAAAAAAAAAAAAAGA]
[+] EMBL CB650310 [GGGCCATTCGCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCTGTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGACGCGCATCAGAATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCATGATAAGTGACAAAAGCTACTTTTCTCAGTAGCGAGGGCAATTGAAGCGGCCTGATCATGCAGACCTAAGATACAAATGCAGAACTTATGCCCGACTTCTGCAGCACTTGAAGAGTCTGGACAAGAGCTGTTTAGGCCCCTTAAGGAAAGCATACTGTCATTCTCTTAATTTATTGCTTCGTCGAGAGGCACGTGAATTCGCCAATGAACTTCGAGCAAGCACGAAAGCACCTAAAAATCCAGCTGTTTGGCTTGAAGGTTCTAATAGTGGCGGTCAGAATGGCAGTAGTGCTGACACTTCAACAGTATCTGATGCATATTCAAAGATGCTAACAATATTTATCCCACTTCTTGTGGATGAGAGTTCCTTTTTTGCACATTTTATGTGCTTTGAAGTACCTGCCCTTGTTCCAGCTGGTGCTCCGAATGCTAAAAGTAGATCAGGGGGAAATGACCCAGATGATGACCTGAATCTTATGGATCCAGATGGCAATGATCTCAAACCAGATGATACATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTTGCATT ]
[+] EMBL CA767022 [ ggacgAGACAAGGGGGAAATGACCCAGATGATGACCTGAATCTTATGGATCCAGATGGCAATGATCTCAAACCAGATGATACATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTTGCATTTCAATGCATGGGATTACAGAACGATACCTGTCCGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCAGACTACTTCATGACTTGGAGTCAAGAATATCAACACAGTTCAGCAGGTTTATTGATGAAGCGTGCCATCAAATCGAGCGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAGTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGNCTTCCAGAACAGTCTTTATGACTTGGCTAATGGTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGNTCACTTATTTATCTTCAATTCGAGAGGCTGGTTCAGNTTTTCTCGNAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAAATTCNTTT CAGCTAGGGCTGGCAAAAACTGATCTAAGGAGGGNGATCNAATCCAGNTTTTNTGGGATTGACAAGTC ATCGG GNCNTGTTTAGGAGGT CNANANA ACTGACTT TGAAGAG TGTTnctta ]
[+] EMBL CB632178 [ GATGCT TATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGGAAGACTTCTCCGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTTGCATTTCAATGCATGGGATTACAGAACGATACCTGTCCGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCAGACTACTTCATGACTTGGAGTCAAGAATATCAACACAGTTCAGCAGGTTTATTGATGAAGCGTGCCATCAAATCGAGCGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAGTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTG ]
[-] EMBL CB650311 [ AGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAGTCAGCACAATGTTCACANCTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATG ]
[+] EMBL CF317171 [ TCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGA ]
[-] EMBL CB644564 [ GTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTAAGGGTCTCAATGTAACAACACCTG TTGGATAAAAataaaa ]
[-] EMBL CB652867 [ ACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACACCTGTT ]
[-] EMBL CB651176 [ ATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACACCTGTTTAAGGAAAATGTGCCCGGTTACCGTGA ]
[-] EMBL CB632179 [ CAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAGTATATATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTGTCTCAATGTAACAACACGGGTTTGGATATAATGTGCCCGGTTACCGTGATG ]
[-] EMBL CB672577 [ CAGACATTGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACACCTGTTTGGATAAAATGTGCCCGGTTACCGTGATGCCAAAAAAAAAAAAAGA]
[-] EMBL CB663387 [ TGTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACCCCc ]
[-] EMBL CB653974 [ GTATTGATAGAGAATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAG TTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGC CATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACGCCTGTTTGGATAAAATGTGCCCGGTTACCGTG ]
[-] EMBL CF317172 [ AGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGCNCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAG TATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTGTCTCAATGTAACAACACCTGTTTGGATAAAATGTGCCCGGTTACCGTGATGCCATTTACGAAAAAA ]
consensusID : consensus_14641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 681 fasta sequence
[TGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACA-CTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGCCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAGTTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAGTATATATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTGTCTCAATGTAACAACA-CCTGTTTGGATAAAAAAAAAAAAAAA]
[-] EMBL CA758970 [TGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCACTTATTTATCTTCAATTCGAGAGGCTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACA CTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGCCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAGTTCATTTGATTGAATTTTACACATCCGCTTTTGCTAGGCCTTATTAGAG TATATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTGTCTCAATGTAACAACA CCTGTTTGGATAAAGAAAAAAAAAAA]
[+] EMBL BM418700 [ AGGGTGATCAAATCCCGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACCTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGCCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTGATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAGTATATATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTGTCTCAATGTAACAACA CCTGTTTGGATATAAAAAA ]
[+] EMBL BI812559 [ TGTATAGGAGGTTACAGAAGACA CTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCTAACTTCTAGATATAAGTACAGCGCCATGTATCATTTCACAGT CAGTAGCTATCTATATTCA TTCATTTGATTGAATTTTACACATCCACTTTTGCTA GCCTTATTAGAGTATATATATATATATATGTTCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTAAACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTGTCTCAATGTAACAACACCCTGTTTGGATAAAAAAAAAA ]
consensusID : consensus_14641#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence
[TAGGGAGGGTTCCACGAAGCCCGTGACTTTCTGGATGAGTTGTGTTCCGCTCACTGTGGGGACACAGTCTCAGAAAGAGTTTTTTGGACAAGTCGAGAGCTTCGTTCAGATGGTGACACGGATCTATGGAAATGAGCCCACATCATGTCGGTTGCTGATATGAAAGATGGTCCTTGCTAACTTCTAGATATAAGTCCCGCCCCC]
[+] EMBL BI808989 [TAGGGAGGGTTCCACGAAGCCCGTGACTTTCTGGATGAGTTGTGTTCCGCTCACTGTGGGGACACAGTCTCAGAAAGAGTTTTTTGGACAAGTCGAGAGCTTCGTTCAGATGGTGACACGGATCTATGGAAATGAGCCCACATCATGTCGGTTGCTGATATGAAAGATGGTCCTTGCTAACTTCTAGATATAAGTCCCGCCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14641#0 GGGCCATTCGCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCTG 60
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 TTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGACGCGCATCAG 120
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 AATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCATGATAAGTGACAAAAGCTACT 180
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 TTTCTCAGTAGCGAGGGCAATTGAAGCGGCCTGATCATGCAGACCTAAGATACAAATGCA 240
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 GAACTTATGCCCGACTTCTGCAGCACTTGAAGAGTCTGGACAAGAGCTGTTTAGGCCCCT 300
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 TAAGGAAAGCATACTGTCATTCTCTTAATTTATTGCTTCGTCGAGAGGCACGTGAATTCG 360
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 CCAATGAACTTCGAGCAAGCACGAAAGCACCTAAAAATCCAGCTGTTTGGCTTGAAGGTT 420
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 CTAATAGTGGCGGTCAGAATGGCAGTAGTGCTGACACTTCAACAGTATCTGATGCATATT 480
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 CAAAGATGCTAACAATATTTATCCCACTTCTTGTGGATGAGAGTTCCTTTTTTGCACATT 540
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 TTATGTGCTTTGAAGTACCTGCCCTTGTTCCAGCTGGTGCTCCGAATGCTAAAAGTAGAT 600
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 CAGGGGGAAATGACCCAGATGATGACCTGAATCTTATGGATCCAGATGGCAATGATCTCA 660
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 AACCAGATGATACATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCG 720
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 ATGGAATCCAGGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGC 780
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 GTTGCATTTCAATGCATGGGATTACAGAACGATACCTGTCCGGTCAGAAAGCTGATGCTG 840
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 CAGGATTTGTTCGCAGACTACTTCATGACTTGGAGTCAAGAATATCAACACAGTTCAGCA 900
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 GGTTTATTGATGAAGCGTGCCATCAAATCGAGCGCAATGAAAGAAATGTACGGCAGACAG 960
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 GAATACTAGCCTACATTCCCAGATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTC 1020
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 AAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAGTCAGCACAATGTTCA 1080
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 CAACTTTGGACAAAATTGCACATAGTGACCCCAAAACTGCAGACATTGTATTGATAGAGA 1140
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 ATTATGCTGCCTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAA 1200
consensus_14641#1 ------------------------------------------------------------
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 AATTCTACCATGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCAC 1260
consensus_14641#1 ----------TGAGGCCAGTGAATCATATGAACAAGCTTGCACTCGTCATATCAGTTCAC 50
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 TTATTTATCTTCAATTCGAGAGGCTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACAT 1320
consensus_14641#1 TTATTTATCTTCAATTCGAGAGGCTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACAT 110
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 ACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGA 1380
consensus_14641#1 ACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGA 170
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 GGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGT 1440
consensus_14641#1 GGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAGGT 230
consensus_14641#2 --------------------------------------------------TAGGGAGGGT 10
** * ***
consensus_14641#0 TACA-GAAGACACTGACTTCT--GATGAGTTGTTTCCT--TCACTGTGGG-ACA-AGTGC 1493
consensus_14641#1 TACA-GAAGACACTGACTTCT--GATGAGTTGTTTCCT--TCACTGTGGG-ACA-AGTGC 283
consensus_14641#2 TCCACGAAGCCCGTGACTTTCTGGATGAGTTGTGTTCCGCTCACTGTGGGGACACAGTCT 70
* ** **** * ****** ********** * * ********** *** ***
consensus_14641#0 AAGAAAGAGTTTTT-GGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGG 1552
consensus_14641#1 AAGAAAGAGTTTTT-GGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATCTATGG 342
consensus_14641#2 CAGAAAGAGTTTTTTGGACAAGT-CGAGAGCTTCGTTCAGATGGTGACACGGATCTATGG 129
************* ******** ************************ ***********
consensus_14641#0 AAATGAGCCCA--TCATGTCGGTTGCTGATATGAAAGATG-TCCTTGCTAACTTCTAGAT 1609
consensus_14641#1 AAATGAGCCCA--TCATGTCGGTTGCTGATATGAAAGATG-TCCTTGCTAACTTCTAGAT 399
consensus_14641#2 AAATGAGCCCACATCATGTCGGTTGCTGATATGAAAGATGGTCCTTGCTAACTTCTAGAT 189
*********** *************************** *******************
consensus_14641#0 ATAAGTACAGCGCCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAATTCATTTG 1669
consensus_14641#1 ATAAGTACAGCGCCATGTATCATTTCACAGTGCAGTAGCTATCTATATTCAGTTCATTTG 459
consensus_14641#2 ATAAGTCCCGCCCCC--------------------------------------------- 204
****** * ** **
consensus_14641#0 ATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAGTATATATATATAT----GT 1725
consensus_14641#1 ATTGAATTTTACACATCCACTTTTGCTAGGCCTTATTAGAGTATATATATATATATATGT 519
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 TCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTA 1785
consensus_14641#1 TCCCTGGTTAAGTTTATCTGTGTGGCCTCTGTATAGCCGTGGATATGATCTGCTTCCGTA 579
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 AACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATGTG 1845
consensus_14641#1 AACCATACATGCTGAGCAGTTGCATCAGGCTCAGAACTGTAAAACAATTAAATTTATCTG 639
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 TCTCAATGTAACAACACCTGTTTGGATAAAATGTGCCCGGTTACCGTGATGCCAAAAAAA 1905
consensus_14641#1 TCTCAATGTAACAACACCTGTTTGGATAAAAAAAAAAAAAAA------------------ 681
consensus_14641#2 ------------------------------------------------------------
consensus_14641#0 AAAAAAGA 1913
consensus_14641#1 --------
consensus_14641#2 --------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||