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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1552 fasta sequence
[CAAAATTCCCGAGAAGAAGAAGGGAAAAAAACACACACACATACAGAGAGAAAATATCANGG-TGCTGCTGAGCCCGCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGGGGCT-C--CGGTG-CTGCGTCAGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGTCGGCGGCCGGCAGCGTGGCGTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGGCCACGCCGGATTCTCCGCCGTCGAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGCGGTGCTGAGCACCAAGAACCTCGACGCCATCACCGACTCGATCCAGCGCGCCTTCGCCACCGTCGACGCCAACCTCTCCACCTGGCTCGAGCAGATGGACAAGGAAGATGAGTCCGGCGCCACGGCCACGGCCATGTTCCTCAGGAACGATGTCCTTGTTGTCTCGCACATTGGCGACTCCTGCTTGCAGGTCGTATCACGCGGTGGGAGGCCTCAAGCTGTGACCAACTTCCACCGACCGTACGGGAACAAGAAAGCGTCTCTTGAAGAGGTGAAGCGGATCAGAGCAGCAGGTGGATGGATTGTTGATGGACGCATATGTGGAGAAATTTCTGTGTCTCGTG-CTTTTGGAGACATTAGATTTAAGACACGGAAGAATGAGATGTTGGTAAAAGGAGTTAAAGAAGGGAGATGGACTGAAAAGTTTATCTCACGAATAAATTTTAAAGGAGATTTAATAGTCTCTTCACCTGACGTAT-CCCTGGTCGAACTTGGACCAGATGTGGAATTTGTTTTGCTAGCAACAGATGGTCTTTGGGATTACATTAAAAGCTCTGAAGCAGTAGCATTAGTTAGGGATCAACTACGGCAACATGGGGATGTCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACA-AACTGGAAGGAGCTGCCTGTTCAAAGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTTGGGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCG-TTGCAGTAGGCCTAGCTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTAATGGGGCTCTTTTTT--TTTTCTGGAAGATCCTTTGATTCATCTTAGTAACTCACCACATCGAAGAGTTACTCCCTCCGTCGATTTACCCAGTCATTTTTTTAATTTCAGAAAACCAACTTTGTATATTTTGATCAACATTAGTCAAAATCCTATGTTCAATTTTTGATGTTAAAAAAAAAA]
[+] EMBL OSS13517A [CAAAATTCCCGAGAAGAAGAAGGGAAAAAAACACACACACATACAGAGAGAAAATATCANGG TGCTGCTGAGCCCGCGTNTNCCGCGGCTGCCGCTCGCCTCCGNCTCCNCCGCTGGAGCGGGGCT C CGGTG CTGCNTCA CGGCGGCAGGGCCGGNTCGGCGGCGTGGTGCCACGCNTCGGCGGCCGGCAGCGTGGCGTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCNNGCAACGAGATGGAGGACGAGGTCGTCCTCCGNCCCGGCTCCCTCCTC ]
[+] EMBL AU096515 [ AGAAGGGAAAAAAACACACACACATACAGAGAGAAAATATCATGGCAGCTGCTGAGCCCGCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGGGGCT C CGGTG CTGCGTCAGCGGCGGCAGGGCCGGGTCGG ]
[+] EMBL AK106278 [ CTGCTGAGCCCGCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGGGGCT C CGGTG CTGCGTCAGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGTCGGCGGCCAGCAGCGTGGCGTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGGCCACGCCGGATTCTCCGCCGTCGAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGCGGTGCTGAGCACCAAGAACCTCGACGCCATCACCGACTCGATCCAGCGCGCCTTCGCCACCGTCGACGCCAACCTCTCCACCTGGCTCGAGCAGATGGACAAGGAAGATGAGTCCGGCGCCACGGCCACGGCCATGTTCCTCAGGAACGATGTCCTTGTTGTCTCGCACATTGGCGACTCCTGCTTGCAGGTCGTATCACGCGGTGGGAGGCCTCAAGCTGTGACCAACTTCCACCGACCGTACGGGAACAAGAAAGCGTCTCTTGAAGAGGTGAAGCGGATCAGAGCAGCAGGTGGATGGATTGTTGATGGACGCATATGTGGAGAAATTTCTGTGTCTCGTG CTTTTGGAGACATTAGATTTAAGACACGGAAGAATGAGATGTTGGTAAAAGGAGTTAAAGAAGGGAGATGGACTGAAAAGTTTATCTCACGAATAAATTTTAAAGGAGATTTAATAGTCTCTTCACCTGACGTAT CCCTGGTCGAACTTGGACCAGATGTGGAATTTGTTTTGCTAGCAACAGATGGTCTTTGGGATTACATTAAAAGCTCTGAAGCAGTAGCATTAGTTAGGGATCAACTACGGCAACATGGGGATGTCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACA AACTGGAAGGAGCTGCCTGCTCAAAGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTTGGGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCG TTGCAGTAGGCCTAGGTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTAATGGGGCTCTTTTTT TTTTCTGGAAGATCCTTTGATTCA ]
[+] EMBL CB618899 [ ggctcCGGTGCTGCGTCGGCGTCGGCGGCGGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCGTGGCGGCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGGCCACGCCGGCTTCTCCGCCGTCGAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGCGGTGCTGAGCACCAAGAACCTCGACGCCATCACCGACTCGATCCAGCGCGCCTTCGCCACCGTCGACGCCAACCTCTCCACCTGGCTCGAGCAGATGGACAAGGAAGACGAGTCCGGCGCCACGGCCACGGCCATGTTCCTCAGGAACGATGTCCTTGTTGTCTCGCACATTGGCGACTCCTGCTT GGTCGTATCACGCGGTGGGAGGCCTCAAGCTGTGACCAACTTCCACCGACCGTACGGGAACAAGAAAGCGTCTCTTGAAGAGGTGAAGCGGATCAGAGCAGCAGGTGGATGGATTGTTGATGGACGCATATGTGGAGAAATTTCTGTGTCTC ]
[+] EMBL AU070383 [ GTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGGCCACGCCGGATTCTCCGCCGTCGAGTTCCTCAAGGACGAG ]
[-] EMBL CB618900 [ CGTCTCTTGAAGAGGTGAAGCGGATCAGAGCAGCAGGTGGATGGATTGTTGATGGACGCATATGTGGAGAAATTTCTGTGTCTCGTG CTTTTGGAGACATTAGATTTAAGACACGGAAGAATGAGATGTTGGTAAAAGGAGTTAAAGAAGGGAGATGGACTGAAAAGTTTATCTCACGAATAAATTTTAAAGGAGATTTAATAGTCTCTTCACCTGACGTAT CCCTGGTCGAACTTGGACCAGATGTGGAATTTGTTTTGCTAGCAACAGATGGTCTTTGGGATTACATTAAAAGCTCTGAAGCAGTAGCATTAGTTAGGGATCAACTACGGCAACATGGGGATGTCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACA AACTGGAAGGAGCTGCCTGTTCAAAGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTTGGGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCG TTGCAGTAGGCCTAGCTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTAATGGGGCT ]
[+] EMBL BQ907123 [ TGTTTCTCGTGCCTTTGGGANACATGAGATTTAAGACCCGGAAGAATGAGAT TTGGTAAAAGGA TTAAAGAAGGGAGATGGACTGAAAAGTTTATCTCACGAATAAATTTTAAAGGAGATTTAATAGTCTCTTCACCTGACGTATCCCCTGGTCGAACTTGGACCAGATGTGGAATTTGTTTTGCTAGCAACAGATGGTCTTTGGGATTACATTAAAAGCTCTGAAGCAGTAGCATTAGTTAGGGATCAACTACGGCAACATGGGGATGTCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACA AACTGGAAGGAGCTGCCTGTTCAAAGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTT GGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCGCTTGCAGTAGGCCTAGCTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTCATGGGGCTCTTTTTTTCTTTTCTGGAAaaa ]
[+] EMBL BI811235 [ CAGTACCATTA TTAGGGATCAACTAC GCAACATGGGGAT TCCA GTTCCCTGTGAGCCACTTGGTCAGATAGCTCTGGATC TC GTC CAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACACAACTGGAAGGAGCTGCCTGTTCAAAGCCCAAATTTATTCTTGGAGTTAACTCAA CAGTTGCAACAGTT GGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCG TT CAGTAGGCCTAGCTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCC AGATATTAATGGGGCTCTTTTTTTCTTTTCTGGAAGATCCTTTGATTCATCTTAGTAACTCACCACATCGAAGAGTTACTCCCTCCGTCGATTTACCCAGTCATTTTTTTAATTTCAGAAAACCAACTTTGTATATTTTGATCAACATTAGTCAAAATCCTATGTTCAATTTTTGATGTTAAAAAAAAAA]
[+] EMBL CA752606 [ TCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACA AACTGGAAGGAGCTGCCTGTTCAAAGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTTGGGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCG TTGCAGTAGGCCTAGCTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATT ]
consensusID : consensus_14648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence
[TCCCTTCTAGGCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGTGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGCGGCGAGCTGTCGAGGCACCGGCGTCACTGCCGGCCAAGTCGCGCCGCGCCGCACCTCCTCCCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATAGGTTCTGAGGTAATTCAAGAAATGCTCTATGGTCTGAATTCATAGGTTTTTTTGGCTGGAATCTCGTACAGTTCCTTTCATCACCTCCCCCAAAGTTTTAGCATGCAATGTTTCTTCTTCTTTTTTCTCTCTTGCTCTGTTTGGTTCTTCCTTTCCCTTTTCCTTTTGTTTCTCCACTTGTGAATAACCTTTCATTTCTTTACATTCAGTAGTACTCTAGTAGAAATGTTCCTCTGTTTCTTCTCCGTTACTGTTGATCATGTTCGTTTGCTGTTTGTGGGTTGTGGCACCAAGAAATGGATGGTTGAATGAGAGAGGGTGGGTGTTGGTGTGCTCCTGCATTTTATTGGAAGCAGCAGCTTCCAGATCTGAGATGGCAGAGGCATTTTGCTGCTCATGGCT]
[+] EMBL CB677733 [TCCCTTCTAGGCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGTGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGCGGCGAGCTGTCGAGGCACCGGCGTCACTGCCGGCCAAGTCGCGCCGCGCCGCACCTCCTCCCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATAGGTTCTGAGGTAATTCAAGAAATGCTCTATGGTCTGAATTCATAGGTTTTTTTGGCTGGAATCTCGTACAGTTCCTTTCATCACCTCCCCCAAAGTTTTAGCATGCAATGTTTCTTCTTCTTTTTTCTCTCTTGCTCTGTTTGGTTCTTCCTTTCCCTTTTCCTTTTGTTTCTCCACTTGTGAATAACCTTTCATTTCTTTACATTCAGTAGTACTCTAGTAGAAATGTTCCTCTGTTTCTTCTCCGTTACTGTTGATCATGTTCGTTTGCTGTTTGTGGGTTGTGGCACCAAGAAATGGATGGTTGAATGAGAGAGGGTGGGTGTTGGTGTGCTCCTGCATTTTATTGGAAGCAGCAGCTTCCAGATCTGAGATGGCAGAGGCATTTTGCTGCTCATGGCT]
consensusID : consensus_14648#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 385 fasta sequence
[ATCCATCGAAACCAGCCGCCACCGTCCCCTTCGGAGAGAAAATATCACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGTGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGGGGCGAGCTGTCGAGGCACCGGCGTCACCGCCGGCCAAGTC-GCGCCGCGCCGCACCTCCTCCCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATA]
[+] EMBL AU166687 [ATCCATCGAAACCAGCCGCCACCGTCCCCTTCGGAGAGAAAATATCACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGTGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGCGGCGAGCTGTCGAGGCACCGGCGTCACCGCCGGCCAAGTC GCGCCGCGCCGCACCTCCTCCCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATA]
[+] EMBL C26766 [ CGAAACCAGCCGCCACCGTCCCCTTCGGAGAGAAAATATCACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGGGCCGAGCTGTCGAGGCACCGGCGTCACt ]
[+] EMBL AU070166 [ AACCAGCCGCCACCGTCCCCTTCGGAGAGAAAATATCACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCTGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCG ]
[+] EMBL AU029782 [ GAAAATATCACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCATGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCANCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGTGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAACGGGCGAGCTGTCGAGGCACCGGCGTCACCGCCGGCCAAGTCTGCGNCGGGCCGCACCTCCTCCCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATT ]
consensusID : consensus_14648#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence
[GTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGCCAACGNCGGATTCTCCGCCGTCGAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGCGGTTGTTGAGAACAAAGAACCTCGACGCAATNAACCGAATTGATCAAGCGGGGCTTNGCAACGTCGACGCAAACTTTCAANTTGGTTGAGANATGACAAGGA]
[+] EMBL C28935 [GTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGCCAACGNCGGATTCTCCGCCGTCGAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGCGGTTGTTGAGAACAAAGAACCTCGACGCAATNAACCGAATTGATCAAGCGGGGCTTNGCAACGTCGACGCAAACTTTCAANTTGGTTGAGANATGACAAGGA]
consensusID : consensus_14648#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[AGGANTCTGCACNAAGCCAAATTTATCTTGGAGTTAACTCAANCAGTTGCAACAGTTGGGGCCNTCTCATTAGGGATTTATATTTCATCNCTCCTTGNGTTGNAATAGGCCTANGTAATTCTNGCAAGTGTGTNTANTACTTACACTTTTACCGTCTGCAANTTCTANCTGCNAAAATGTACATTCTTATAGGGTAAATGCATATGATATCCATTGAATNTGTACTTCAGCTCCTGCTGGNCANAATATTAATGGGGCNCTTTTNNTTTTCTGGAAAAAAATNAGTGNTAACC]
[+] EMBL BE228966 [AGGANTCTGCACNAAGCCAAATTTATCTTGGAGTTAACTCAANCAGTTGCAACAGTTGGGGCCNTCTCATTAGGGATTTATATTTCATCNCTCCTTGNGTTGNAATAGGCCTANGTAATTCTNGCAAGTGTGTNTANTACTTACACTTTTACCGTCTGCAANTTCTANCTGCNAAAATGTACATTCTTATAGGGTAAATGCATATGATATCCATTGAATNTGTACTTCAGCTCCTGCTGGNCANAATATTAATGGGGCNCTTTTNNTTTTCTGGAAAAAAATNAGTGNTAACC]
consensusID : consensus_14648#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence
[CAGTTTTACGGCCTGCAACTTCTAGNTGCAAATNATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTAATGGGGGTNTTTTTTTTTTTNNTGGAANGTTCCNTTTGNTTCAAAAAAAA]
[+] EMBL AU096335 [CAGTTTTACGGCCTGCAACTTCTAGNTGCAAATNATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTAATGGGGGTNTTTTTTTTTTTNNTGGAANGTTCCNTTTGNTTCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14648#0 CAAAATTCCCGAGAAGAAGAAGGGAAAAAAACACACACACATACAGAGAGAAAATATCAN 60
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 GGTGCTGCTGAGCCCGCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGC 120
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 GGGGCTCCGGTGCTGCGTCAGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGTC 180
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ---------------ATCCATCGAAACCAGCCGCCACCGTCCCCTTCGGAGAGAAAATAT 45
consensus_14648#0 GGCGGCCGGCAGCGTGGCGTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGC 240
consensus_14648#3 ------------------GTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGC 42
consensus_14648#4 ------------------AGGANTCTGCACNAAGCCAAATTTATCTTGGAGTTAACTCAA 42
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ---------------------------TCCCTTCTAGGCGCTGGAGCGTGGCTGGGGTGC 33
consensus_14648#2 CACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGTGGCTGGGGTGC 105
consensus_14648#0 CAAGCTGCAG--GGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCC 298
consensus_14648#3 CAAGCTGCAG--GGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCC 100
consensus_14648#4 NCAGTTGCAACAGTTGGGGCCNTCTCATTAGGGATTTATATTTCATCNCTCCTTGNGTTG 102
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 TGCGTCGGCGGCGGCGGCAGGGCCGGTGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGG 93
consensus_14648#2 TGCGTCGGCGGCGGCGGCAGGGCCGG-GTCGGCGGCGTGGTGCCACGCGACGGCGGCCGG 164
consensus_14648#0 CTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGGCCACGCCGGATTCTCCGCCGTC 358
consensus_14648#3 CTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGCCAACGNCGGATTCTCCGCCGTC 160
consensus_14648#4 NAATAGGCCTANGTAATTCTNGCAAGTGTGTNTANTACTTACACT---TTTACCGTCTGC 159
consensus_14648#5 -----------------------------------------CAGT---TTTACGGCCTGC 16
consensus_14648#1 CAGCATGGCAGCGGCGTTGGAGCTGGAGGCTAT----CCGGTGGGGGACCGCCAAGCTGC 149
consensus_14648#2 CAGCATGGCAGCGGCGTTGGAGCTGGAGGCTAT----CCGGTGGGGGACCGCCAAGCTGC 220
* * *
consensus_14648#0 GAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGC--GG 416
consensus_14648#3 GAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGC--GG 218
consensus_14648#4 AANTTCT---------ANCTG--CNAA-AATGTACATTCTTATAGGGTAAATGCATATGA 207
consensus_14648#5 AACTTCT---------AGNTG--CAAATNATGTACATTCTTATAGGGTAAATGCATAGGA 65
consensus_14648#1 AGGGCGC--GGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGC 207
consensus_14648#2 AGGGTGC--GGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGG 278
* * * ** *
consensus_14648#0 T-GCTGAGCACCAAGAACCTCGACGCC-ATCA-CCGACTCGA-TCCAGCGCGCCTTCGCC 472
consensus_14648#3 TTGTTGAGAACAAAGAACCTCGACGCA-ATNAACCGAATTGA-TCAAGCGGGGCTTNGC- 275
consensus_14648#4 TATCCATTGAATNTGTACTTCAGCTCCTGCTGGNCANAATAT-TAATGGGGCNCTTTTN- 265
consensus_14648#5 TATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATAT-TAATGGGGGTNTTTTT- 123
consensus_14648#1 GGCGAGCTGTCGAGGCACCGGCGTCACTGCCGGCCAAGTCGCGCCGCGCCGCACCTCCTC 267
consensus_14648#2 GGCGAGCTGTCGAGGCACCGGCGTCACCGCCGGCCAAGTCGCGCCGCGCCGCACCTCCTC 338
* ** * * *
consensus_14648#0 ACCGTCGACGCCAACCTCTCCACCTGGCTCGAGCAGATGGACAAGGAAGATGAGTCCGGC 532
consensus_14648#3 AACGTCGACGC-AAACTTTCAANTTGG-TTGAG-ANATG-ACAAGGA------------- 318
consensus_14648#4 --NTTTTCTGGAAAAAAATNAGTGNTAACC------------------------------ 293
consensus_14648#5 --TTTTTTNNTGGAANGTTCCNTTTGNTTCAAAAAAAA---------------------- 159
consensus_14648#1 CCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATAGGTTCTGAGGTAA 327
consensus_14648#2 CCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATA------------- 385
consensus_14648#0 GCCACGGCCACGGCCATGTTCCTCAGGAACGATGTCCTTGTTGTCTCGCACATTGGCGAC 592
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 TTCAAGAAATGCTCTATGGTCTGAATTCATAGGTTTTTTTGGCTGGAATCTCGTACAGTT 387
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 TCCTGCTTGCAGGTCGTATCACGCGGTGGGAGGCCTCAAGCTGTGACCAACTTCCACCGA 652
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 CCTTTCATCACCTCCCCCAAAGTTTTAGCATGCAATGTTTCTTCTTCTTTTTTCTCTCTT 447
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 CCGTACGGGAACAAGAAAGCGTCTCTTGAAGAGGTGAAGCGGATCAGAGCAGCAGGTGGA 712
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 GCTCTGTTTGGTTCTTCCTTTCCCTTTTCCTTTTGTTTCTCCACTTGTGAATAACCTTTC 507
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 TGGATTGTTGATGGACGCATATGTGGAGAAATTTCTGTGTCTCGTGCTTTTGGAGACATT 772
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ATTTCTTTACATTCAGTAGTACTCTAGTAGAAATGTTCCTCTGTTTCTTCTCCGTTACTG 567
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 AGATTTAAGACACGGAAGAATGAGATGTTGGTAAAAGGAGTTAAAGAAGGGAGATGGACT 832
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 TTGATCATGTTCGTTTGCTGTTTGTGGGTTGTGGCACCAAGAAATGGATGGTTGAATGAG 627
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 GAAAAGTTTATCTCACGAATAAATTTTAAAGGAGATTTAATAGTCTCTTCACCTGACGTA 892
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 AGAGGGTGGGTGTTGGTGTGCTCCTGCATTTTATTGGAAGCAGCAGCTTCCAGATCTGAG 687
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 TCCCTGGTCGAACTTGGACCAGATGTGGAATTTGTTTTGCTAGCAACAGATGGTCTTTGG 952
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ATGGCAGAGGCATTTTGCTGCTCATGGCT------------------------------- 716
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 GATTACATTAAAAGCTCTGAAGCAGTAGCATTAGTTAGGGATCAACTACGGCAACATGGG 1012
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 GATGTCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGAC 1072
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 AACATTAGTATAGTCATAGCTGACTTGGGGAGGACAAACTGGAAGGAGCTGCCTGTTCAA 1132
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 AGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTTGGGGCCGTCTCATTA 1192
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 GGGATTTATATTTCATCGCTCCTTGCGTTGCAGTAGGCCTAGCTAGTTCTTTCAAGTGTG 1252
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 TATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATA 1312
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 GGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTA 1372
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 ATGGGGCTCTTTTTTTTTTCTGGAAGATCCTTTGATTCATCTTAGTAACTCACCACATCG 1432
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 AAGAGTTACTCCCTCCGTCGATTTACCCAGTCATTTTTTTAATTTCAGAAAACCAACTTT 1492
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
consensus_14648#0 GTATATTTTGATCAACATTAGTCAAAATCCTATGTTCAATTTTTGATGTTAAAAAAAAAA 1552
consensus_14648#3 ------------------------------------------------------------
consensus_14648#4 ------------------------------------------------------------
consensus_14648#5 ------------------------------------------------------------
consensus_14648#1 ------------------------------------------------------------
consensus_14648#2 ------------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||