These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1410 fasta sequence [AAAGAAAAACACCTCCTCCTCTCTTCCTTCCAGCGAGCTCCACCTCCAGCCAGCCATAGCCATCCCCTTCTCCGATTCGATCGCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCG-CCCGCCGGCGTCGGCGGG-GGCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAAACCGTCAGGAGACATCCAGGTGCCTATCTTTAACCAGCAGGCTCCAGCATCCATCTTTGAGCGTGTAAGCCCACACAACATCCCTAGCAATTTCACATTTGGGGCTGAAAGAACTACTGAAGTGAAGCTCCCAGATAACAATAGCTTTGGTGTTGTCAACTCATCTGGGGGCGATAGCATGATGGACAGCTCCTAGTATGTTTTGCATTGATACAAAAGGAATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAGGAAAGTTGCATTTTTTGTACAAGGATTTCAAGCGTTTTGACCATTGCAGTTCTGCGTTTTAACAAACATGTATGTGCTTTTTCATCGAACTTTTCAAGTGTAATTCAAGTTAACTGAAATTACGCTGGAAAGCTCAAGTAAAAGCTATGCATGTGTTTTTGTTGAAACGTAGAAATGTAGTCGTCAAGAATGCTGTAACACCCAGAAATATTACTCCCACGGCTGCAAGATGAACTGAGAAATCTGGAAAATACACACATGGTTTGTTTGTTTGTATCTTGGCAGTTGTTGATATACTAGCTTGAGTCCCTTGCTTACAGTGAAAAA] [+] EMBL AK071054 [AAAGAAAAACACCTCCTCCTCTCTTCCTTCCAGCGAGCTCCACCTCCAGCCAGCCATAGCCATCCCCTTCTCCGATTCGATCGCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCG CCCGCCGGCGTCGGCGGG GGCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAAACCGTCAGGAGACATCCAGGTGCCTATCTTTAACCAGCAG GCATCCATCTTTGAGCGTGTAAGCCCACACAACATCCCTAGCAATTTCACATTTGGGGCTGAAAGAACTACTGAAGTGAAGCTCCCAGATAACAATAGCTTTGGTGTTGTCAACTCATCTGGGGGCGATAGCATGATGGACAGCTCCTAGTATGTTTTGCATTGATACAAAAGGAATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAGGAAAGTTGCATTTTTTGTACAAGGATTTCAAGCGTTTTGACCATTGCAGTTCTGCGTTTTAACAAACATGTATGTGCTTTTTCATCGAACTTTTCAAGTGTAATTCAAGTTAACTGAAATTACGCTGGAAAGCTCAAGTAAAAGCTATGCATGTGTTTTTGTTGAAACGTAGAAATGTAGTCGTCAAGAATGCTGTAACACCCAGAAATATTACTCCCACGGCTGCAAGATGAACTGAGAAATCTGGAAAATACACACATGGTTT ] [+] EMBL CF323666 [ ATAGCCATCCCCTTCTCCGATTCGATCGCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCG CCCGCCGGCGTCGGCGGG GGCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCAC ] [+] EMBL OSR2822A [ GATCGCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGG GATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAG GNGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGTCACCGTTCCGCCGGCGTCGGCGGGTGGCTCAGGCGGCGGCGGGG ] [+] EMBL CA305831 [ GAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAAACCGTCAGGAGACATCCAGGTGCCTATCTTTAACCAGCAGGCTCCAGCATCCATCTTTGAGCGTGTAAGCCCACACAACATCCCTAGCAATTTCACATTTGGGGCTGAAAGAACTACTGAAGTGAAGCTCCCAGATAACAATAGCTTTGGTGTTGTCAACTCATCTGGGGGCGATAGCATGATGGACAGCTCCTAGTATGTTTTGCATTGATACAAAAGGAATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAG ] [-] EMBL CB672253 [ ATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAAACCGTCAGGAGACATCCAGGTGCCTATCTTTAACCAGCAGGCTCCAGCATCCATCTTTGAGCGTGTAAGCCCACACAACATCCCTAGCAATTTCACATTTGGGGCTGAAAGAACTACTGAAGTGAAGCTCCCAGATAACAATAGCTTTGGTGTTGTCAACTCATCTGGGGGCGATAGCATGATGGACAGCTCCTAGTATGTTTTGCATTGATACAAAAGGAATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAGGAAAGTTGCATTTTTTGTACAAGGATTTCAAGCGTTTTGACCATTGCAGTTCTGCGTTTTAACAAACATGTATGTGCTTTTTCATCGAACTTTTCAAGTGTAATTCAAGTTAACTGAAATTACGCTGGAAAGCTCAAGTAAAAGCTATGCATGTGTTTTTGTTGAAACGTAGAAATGTAGTCGTCAAGAATGCTGTAACACCCAGAAATATTACTCCCACGGCTGCAAGATGAACTGAGAAATCTGGAAAATACACACATGGTTTGTTTGTTTG ] [+] EMBL AU161555 [ ACAGCACCTAGTATGTTTTGCATTGATACAAAAGGAATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAGGAAAGTTGCATTTTTTGTACAAGGATTTCAAGCGTTTTNACCATTGCAGTTCTGCGTTTTAACAAACATGTATGTNCTTTTTCATCGAACTNTTCAAGTGTAATTCAAGTTAACTGAAATTACGCTGGAAAGCTCAAGTAAAAGCTATGCATGTGTTTTTGTTGAAACGTAGAAATGTAGTCGTCAAGAATGCTGTAACACCCAGAAATATTACTCCCACGGCTGCAAGATGAACTGAGAAATCTGGAAAATACACACATGGTTTGTTTGTTTGTATCTTGGCAGTTGTTGATATACTAGCTTGAGTCCCTTGCTTACAGTGAAAAA] consensusID : consensus_14652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1246 fasta sequence [AAAGAAAAAGAAAAAAAAAAAGAAAAACCCAACTCCGAACCCTTTCTTTTGCTCCAAGCGCGCGCGCCGCCACTGGACTACCGCACCACCACCACCGGCCGATCGAGCGCGGCGGCGGCTGCGGCGAGGCCGGCGGAGGAGGCGAGATGAGGAAGCGGGAGAGGGAGAACCCCTGCGAGATCTGCGGGCACTACCACAACAGCGAGGAAGGGGAGCGGTGCGGGGTCTGCGGCCACCGGTCGGGGCCGATGGCCGGGGAGCCCCCGGCGACGCTGGACCCGGCCTTCCCCACCGAGGTCCTCAAGGACTTCCTCTTCCTCGGCAGCTACAACAACGCCTCCCGCTCCGAGGTCCTCAAGACGCTCAGCATCACCCACATCCTCAACACTGTGCCAGATTGTCAGAATCTCTACCGGAATTCTTTCACTTATCACTGCATTCAGGATGAGAGGAGCTTGGATTTTGATGGTGCAAACAGGTTTTTAGAACAGTGTGAAAGGGAGACATCACGTGTTCTTGTCCATTGCATGTCTGGAAAAAACAGGTCTGCAGCTATTGTAATAGGCTACTTGATGAAATCTAGGGGATGGAGACTTTCACAGTCTTACCAATGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATCGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGTGACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCCGTCCATCTTCGAGCGAGTCAACCCAAGTAAT-ATTCCTAGTAATTTTACTTTTGGAGCAATGGAGG-CCAACACTCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTC-ATAACTCATAAGAGGAC-C-TGACATGTTC-AATCTC-CTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGC-AAATGATGGCAATTGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGATGGCACGCTTTTTCAGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK102281 [AAAGAAAAAGAAAAAAAAAAAGAAAAACCCAACTCCGAACCCTTTCTTTTGCTCCAAGCGCGCGCGCCGCCACTGGACTACCGCACCACCACCACCGGCCGATCGAGCGCGGCGGCGGCTGCGGCGAGGCCGGCGGAGGAGGCGAGATGAGGAAGCGGGAGAGGGAGAACCCCTGCGAGATCTGCGGGCACTACCACAACAGCGAGGAAGGGGAGCGGTGCGGGGTCTGCGGCCACCGGTCGGGGCCGATGGCCGGGGAGCCCCCGGCGACGCTGGACCCGGCCTTCCCCACCGAGGTCCTCAAGGACTTCCTCTTCCTCGGCAGCTACAACAACGCCTCCCGCTCCGAGGTCCTCAAGACGCTCAGCATCACCCACATCCTCAACACTGTGCCAGATTGTCAGAATCTCTACCGGAATTCTTTCACTTATCACTGCATTCAGGATGAGAGGAGCTTGGATTTTGATGGTGCAAACAGGTTTTTAGAACAGTGTGAAAGGGAGACATCACGTGTTCTTGTCCATTGCATGTCTGGAAAAAACAGGTCTGCAGCTATTGTAATAGGCTACTTGATGAAATCTAGGGGATGGAGACTTTCACAGTCTTACCAATGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATCGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGTGACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCCGTCCATCTTCGAGCGAGTCAACCCAAGTAAT ATTCCTAGTAATTTTACTTTTGGAGCAATGGAGG CCAACACTCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTC ATAACTCATAAGAGGAC C TGACATGTTC AATCTC CTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGC AAATGATGGCAATTGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGATGGCACGCT ] [+] EMBL AU162270 [ ACCCTTTCTTTTGCTCCAAGCGCGCGCGCCGCCACNNGACTACCGCACCACCACCACCGGCCGATCGAGCGCGGCGGCGGCTGCGGCGAGGCCGGCGGAGGAGGCGAGATGAGGAAGCGGGAGAGGGAGAACCCCTGCGAGATCTGCGGGCACTACCACAACAGCGAGGAAGGGGAGCGGTGCGGGGTCTGCGGCAACCGGTCGGGGCCGATNG CGGGGAGCCCCCGGCGACNCTGGACCCGGCCTTCCCCACCGAGGTCCTCAAGGANTTCCTCTTCCTCGGCAGNTACAACAACACTTCCGGTTCNGAGGTCCTCAAGAGGTTCAGNATAACCa ] [+] EMBL AU067980 [ ACCCTTTCTTTTGCTCCAAGCGCGCGCGCCGCCACTGGACTACCGCACCACCACCACCGGCCGATCGAGCGCGGCGGCGGCTGCGGCGAGGCCGGCGGACGAGGCGAGATGAGGAAGCGGGAGAGGGAGAACCCCTGCGAGATCTGCGGGCACTACCACAACAGCGAGGAAGGGGAGCGGTGCGGGGTCTGCGGCCACCGGTCGGGGCCGATGGCCGGGGAGCCCCCGGCGACGCTGGACCNGGCCTTCCCCACCGAGGTCCTCAAGGACTTCCTCTTCCTCGGCAGCTACAACAACGCCTCCCGCTCCGAGGT ] [+] EMBL AU029558 [ CAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATCGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGTGACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCCGTCCATCTTCGAGCGAGTCAACCCAAGTAAT ATTCCTAGTAATTTTACTTTTGGAGCAATGGAGG CCAACACTCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTC ATAACTCATAAGAGGNC C TGACATGTTC AATCTC CTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGC AAATGATGGCAATTGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCAaaaaaaaa ] [+] EMBL AU067981 [ TTCGAGCGAGTCAACCCAAGTAATAATTCCTAGTAATTTTACTTTTGGAGCAATGGAGGCCCAACACNCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTC ATAACTCATAAGNGGNC C TGACATGTTN AATCTC CTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGC AAATGATGGCAATTGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGATGGCNCGCTTTTTCAGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI808027 [ caAAGTCAATAACTCATAAGAGGACACATGACATGTTCAAATCTCACTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGCAAAATGATGGCAAATGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCAaaaaaaaa ] [+] EMBL BE229512 [ TGGATATTACTG CAGGAATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGC AAATGATGGCAATTGMTCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGCCCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGRTGGCACGYTTTTTCAG CCCAAAAAAAA ] consensusID : consensus_14652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 827 fasta sequence [GGGTCCGGGCCCCCCCCTTCAGCGAGCTCCCCTTAGAGCCAGCCATAGCCATCCCCTTCTCCGATTCGACCTCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCGCCCGCCGGCGTCGGCGGGGGCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAACCGTCAGGAGACATCCAGGTGCCTATCT] [+] EMBL CB672254 [GGGTCCGGGCCCCCCCCTTCAGCGAGCTCCCCTTAGAGCCAGCCATAGCCATCCCCTTCTCCGATTCGACCTCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCGCCCGCCGGCGTCGGCGGGGGCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAACCGTCAGGAGACATCCAGGTGCCTATCT] [+] EMBL CF330173 [ GGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTC ] consensusID : consensus_14652#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [AGGACGAGACAAGGGGGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTTCACAGCATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATNGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGTGACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCCGTCCATTTTCGAGCGAGTCAACCCAAGTAATATTCCTAGTAATTTTACTTTTGGAGCAATGGAGGCCAACACTCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTCATAACTCATAAGAAGACCTGACATGTTCAATCTCCTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATTTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGCAAATGATGGCAAATGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAGTGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGATGGCAAAAAAAAAAAAAAAAAA] [-] EMBL CA762132 [AGGACGAGACAAGGGGGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTTCACAGCATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATNGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGTGACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCCGTCCATTTTCGAGCGAGTCAACCCAAGTAATATTCCTAGTAATTTTACTTTTGGAGCAATGGAGGCCAACACTCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTCATAACTCATAAGAAGACCTGACATGTTCAATCTCCTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATTTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGCAAATGATGGCAAATGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAGTGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGATGGCAAAAAAAAAAAAAAAAAA] consensusID : consensus_14652#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence [TTTTGTGTCATTTGGGAATAGACCAATCCTCTGAGATGAAGCTTGCTATTGCAAGTACCAGTTAGTTGATGGCAACTAGGAACAATGGTTAGCTAGCCAATATCTGACAGGATTATCAGCTTTATTGTTTAGACATGTACTCTGCAACTTTGCAAATGTTCTTGTTCTATTTGAAAGTAAAATGATATCTTACATAGTTCTTGCTTGGCAGACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAG] [+] EMBL CF304017 [TTTTGTGTCATTTGGGAATAGACCAATCCTCTGAGATGAAGCTTGCTATTGCAAGTACCAGTTAGTTGATGGCAACTAGGAACAATGGTTAGCTAGCCAATATCTGACAGGATTATCAGCTTTATTGTTTAGACATGTACTCTGCAACTTTGCAAATGTTCTTGTTCTATTTGAAAGTAAAATGATATCTTACATAGTTCTTGCTTGGCAGACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14652#0 ------------------------------------------------------------ consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 AAAGAAAAAGAAAAAAAAAAAGAAAAACCCAACTCCGAACCCTTTCTTTTGCTCCAAGCG 60 consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 ------------------------------------------------------------ consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 CGCGCGCCGCCACTGGACTACCGCACCACCACCACCGGCCGATCGAGCGCGGCGGCGGCT 120 consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 ------------------------------------------------------------ consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 GCGGCGAGGCCGGCGGAGGAGGCGAGATGAGGAAGCGGGAGAGGGAGAACCCCTGCGAGA 180 consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 ------------------------------------------------------------ consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 TCTGCGGGCACTACCACAACAGCGAGGAAGGGGAGCGGTGCGGGGTCTGCGGCCACCGGT 240 consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 ------------------------------------------------------------ consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 CGGGGCCGATGGCCGGGGAGCCCCCGGCGACGCTGGACCCGGCCTTCCCCACCGAGGTCC 300 consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 ------------------------------------------------------------ consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 TCAAGGACTTCCTCTTCCTCGGCAGCTACAACAACGCCTCCCGCTCCGAGGTCCTCAAGA 360 consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 -----------------------------AAAGAAAAACACCTCCTCCTCTCTTCCTTCC 31 consensus_14652#2 ---------------------------------------GGGTCCGGGCCCCCCCCTTC- 20 consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 CGCTCAGCATCACCCACATCCTCAACACTGTGCCAGATTGTCAGAATCTCTACCGGAATT 420 consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 AGCGAGCTCCACCTCCAGCCAGCCATAGCCATCCCCTTCTCCGATTCGATCGCTCGCCGT 91 consensus_14652#2 AGCGAGCTCCCCTTAGAGCCAGCCATAGCCATCCCCTTCTCCGATTCGACCTCTCGCCGT 80 consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 CTTTCACTTATCACTGCATTCAGGATGAGAGGAGCTTGGATTTTGATGGTGCAAACAGGT 480 consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 CGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGG 151 consensus_14652#2 CGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGG 140 consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 TTTTAGAACAGTGTGAAAGGGAGACATCACGTGTTCTTGTCCATTGCATGTCTGGAAAAA 540 consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 GAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCAC 211 consensus_14652#2 GAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCAC 200 consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 ACAGGTCTGCAGCTATTGTAATAGGCTACTTGATGAAATCTAGGGGATGGAGACTTTCAC 600 consensus_14652#3 --------------------------------------------------------AGGA 4 consensus_14652#0 AAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCGCCCGCCGGCGTCGGCGGGG 271 consensus_14652#2 AAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCGCCCGCCGGCGTCGGCGGGG 260 consensus_14652#4 TTTTGTGTCATTTGGGAATAGACCAATCCTCTGAGATGAAGCTTGCTATTGCAAGTACCA 60 consensus_14652#1 AGTCTTACCAATGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTT-CACAG 659 consensus_14652#3 CGAGACAAGGGGGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTT-CACAG 63 ** * * * * * * consensus_14652#0 GCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCG 331 consensus_14652#2 GCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCG 320 consensus_14652#4 G-TTAGTTGATGGCAACTA-GGAACAATGGTTAG---CTAGCCAATATCTGACAGGATTA 115 consensus_14652#1 AATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAA 719 consensus_14652#3 CATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAA 123 * ** * * * * * * consensus_14652#0 TCGGAGATCCTCAAGGACTTCCTCT-TCCTCGGCAGCTACGACAACGCCTCCCGCTCCGA 390 consensus_14652#2 TCGGAGATCCTCAAGGACTTCCTCT-TCCTCGGCAGCTACGACAACGCCTCCCGCTCCGA 379 consensus_14652#4 TCAG----CTTTATTGTTTAGACATGTACTCTGCAACTTTGCAAATGT-TCTTGTTCTA- 169 consensus_14652#1 TCGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGT 779 consensus_14652#3 TNGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGT 183 * * * * * *** * * * consensus_14652#0 GCTGCTCAAGACCATCGGCATCTCCCACA-TCCTCAAT------ACTGTACCCTTATGCC 443 consensus_14652#2 GCTGCTCAAGACCATCGGCATCTCCCACA-TCCTCAAT------ACTGTACCCTTATGCC 432 consensus_14652#4 --TTTGAAAGTAAAATGATATCTTACATAGTTCTTGCTTGGCAGACTGTACCCTTATGCC 227 consensus_14652#1 GACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCC---------GTCCATCTTCGAG 830 consensus_14652#3 GACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCC---------GTCCATTTTCGAG 234 *** * * ** * * * consensus_14652#0 AAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGT 503 consensus_14652#2 AAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGT 492 consensus_14652#4 AAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGT 287 consensus_14652#1 CGAGTCAACCCAAGTAATATTCCTAGTAATTTTACTTTTGGAGCAATGGAGGCCAACACT 890 consensus_14652#3 CGAGTCAACCCAAGTAATATTCCTAGTAATTTTACTTTTGGAGCAATGGAGGCCAACACT 294 * * * * * * * *** * * ** * * ** * consensus_14652#0 TTGATGAT--GCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGT 561 consensus_14652#2 TTGATGAT--GCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGT 550 consensus_14652#4 TTGATGAT--GCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGT 345 consensus_14652#1 CCTATGGACGACAATGGCGCGCCCGCACCAAC-TTCAGGTGATAA--CCCGATGGACAGC 947 consensus_14652#3 CCTATGGACGACAATGGCGCGCCCGCACCAAC-TTCAGGTGATAA--CCCGATGGACAGC 351 *** **** * ** * * ***** * ** ** consensus_14652#0 CCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGAC 621 consensus_14652#2 CCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGAC 610 consensus_14652#4 CCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGAC 405 consensus_14652#1 TCATAACAAGTCATAACTCATAAGAGGACCTG-ACATGTT-CAATCTCCTCTGTAGTGAT 1005 consensus_14652#3 TCATAACAAGTCATAACTCATAAGAAGACCTG-ACATGTT-CAATCTCCTCTGTAGTGAT 409 *** ** **** * *** * * * * *** * ** ** * ** consensus_14652#0 CAAAGGCTGGAGACT--TTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTG 679 consensus_14652#2 CAAAGGCTGGAGACT--TTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTG 668 consensus_14652#4 CAAAGGCTGGAGACT--TTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTG 463 consensus_14652#1 TAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATG 1065 consensus_14652#3 TAGTGAATGGATATTACTGCCAGGCATATTTGATATGCAAAATGGGATGTTATTTAGATG 469 * * **** * * * ** * * * ** * *** * ** consensus_14652#0 CAATT---GGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAAT 736 consensus_14652#2 CAATT---GGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAAT 725 consensus_14652#4 CAATT---GGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAAT 520 consensus_14652#1 GTCTCTAGAATTGATGAATGGTTCTGGCAAATGATGGCAATTGATCAGGGTTATATGCAC 1125 consensus_14652#3 GTCTCTAGAATTGATGAATGGTTCTGGCAAATGATGGCAAATGATCAGGGTTATATGCAC 529 * ***** * ***** **** * * *** *** * * * consensus_14652#0 T-----CCACTGTTGGCATTCCAGCTCAGGCTTTTGT-TCCAACAGATGCGTTCCCTTCA 790 consensus_14652#2 T-----CCACTGTTGGCATTCCAGCTCAGGCTTTTGT-TCCAACAGATGCGTTCCCTTCA 779 consensus_14652#4 T-----CCACTGTTGGCATTCCAGCTCAGGCTTTTGT-TCCAACAG-------------- 560 consensus_14652#1 TGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCAT 1185 consensus_14652#3 TGACTGCCAATCATGGCAAGTGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCAT 589 * *** * ***** * * *** * * *** ** consensus_14652#0 CTTGGATTTGGTTTCCCAAAACCGTCAGGAGACATCCAGGTGCCTATCTTTAACCAGCAG 850 consensus_14652#2 CTTGGATTTGGTTTCCCAAA-CCGTCAGGAGACATCCAGGTGCCTATCT----------- 827 consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 GATGGCACGCTTTTTCAGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1245 consensus_14652#3 GATGGCA---------------AAAAAAAAAAAAAAAAA--------------------- 613 consensus_14652#0 GCTCCAGCATCCATCTTTGAGCGTGTAAGCCCACACAACATCCCTAGCAATTTCACATTT 910 consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 A----------------------------------------------------------- 1246 consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 GGGGCTGAAAGAACTACTGAAGTGAAGCTCCCAGATAACAATAGCTTTGGTGTTGTCAAC 970 consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 ------------------------------------------------------------ consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 TCATCTGGGGGCGATAGCATGATGGACAGCTCCTAGTATGTTTTGCATTGATACAAAAGG 1030 consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 ------------------------------------------------------------ consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 AATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAGGAAAGTT 1090 consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 ------------------------------------------------------------ consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 GCATTTTTTGTACAAGGATTTCAAGCGTTTTGACCATTGCAGTTCTGCGTTTTAACAAAC 1150 consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 ------------------------------------------------------------ consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 ATGTATGTGCTTTTTCATCGAACTTTTCAAGTGTAATTCAAGTTAACTGAAATTACGCTG 1210 consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 ------------------------------------------------------------ consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 GAAAGCTCAAGTAAAAGCTATGCATGTGTTTTTGTTGAAACGTAGAAATGTAGTCGTCAA 1270 consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 ------------------------------------------------------------ consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 GAATGCTGTAACACCCAGAAATATTACTCCCACGGCTGCAAGATGAACTGAGAAATCTGG 1330 consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 ------------------------------------------------------------ consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 AAAATACACACATGGTTTGTTTGTTTGTATCTTGGCAGTTGTTGATATACTAGCTTGAGT 1390 consensus_14652#2 ------------------------------------------------------------ consensus_14652#4 ------------------------------------------------------------ consensus_14652#1 ------------------------------------------------------------ consensus_14652#3 ------------------------------------------------------------ consensus_14652#0 CCCTTGCTTACAGTGAAAAA 1410 consensus_14652#2 -------------------- consensus_14652#4 -------------------- consensus_14652#1 -------------------- consensus_14652#3 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||