These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 768 fasta sequence [AGCTTGCACATTTGTTCGGCTCTTCTTCTTCTTCGTCTTCGTCTTCCTCCAAGAAGAGGAGGAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCTTCGTCGTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGACGCGGGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGGAGTGCGCCGGGGAGCTCGTGCTGGAGGAGATCGCGGCCGCGGCGGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCT-CCGCGCCGTGCTCGCGTCGCTCGGCGACGAGCTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTATGGCTGCGCGTGATTATATATTGGTTACTAGGTTTTGATCGATGTACGTAATGCATGTTAATCGATCGTCTCCTGTATGTACGTGTCGTTCATCTGCTGTTCATTGTCTCCACTGATTTCTTTTGTTCTCTTTGTACGTAGTACGAGTTTCACAGAAGAAATGAACAGAACGGTCAGTTTAGATCGGTAACGTTAAAAAA] [+] EMBL AU162621 [AGCTTGCACATTTGTTCGGCTCTTCTTCTTCTTCGTCTTCGTCTTCCTCCAAGAAGAGGAGGAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCTTCGTCGTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGACGCGGGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGGAGTGCGCCGGGGAGCTCGTGCTGGAGGA ] [+] EMBL AK070778 [ CTTCTTCTTCTTCGTCTTCGTCTTCCTCCAAGAAGAGGAGGAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCTTCGTCGTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGACGCGGGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGGAGTGCGCCGGGGAGCTCGTGCTGGAGGAGATCGCGGCCGCGGCGGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCT CCGCGCCGTGCTCGCGTCGCTCGGCGACGAGCTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTATGGCTGCGCGTGATTATATATTGGTTACTAGGTTTTGATCGATGTACGTAATGCATGTTAATCGATCGTCTCCTGTATGTACGTGTCGTTCATCTGCTGTTCATTGTCTCCACTGATTTCTTTTGTTCTCTTTGTACGTAGTACGAGTTTCACAGAAGAAATGAACAGAACGGTCAGT ] [+] EMBL AU162628 [ GGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCT CCGCGCCGTGCTCGCGTCGCTCGGCGACGAGCTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTATGGCTGCGCGTGATTATATATTGGTTACTAGGTTTTGATCGATGTACGTAATGCATGTTAATCGATCGTCTCCTGTATGTACGTGTCGTTCATCTGCTGTTCATTGTCTCCACTGATTTCTTTTGT ] [+] EMBL AU071132 [ GGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCT CCGCGCCGTGCTCGCCTCGCTCGGCGACGA CTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTGTGG ] [+] EMBL AU071083 [ GGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCT CCGCGCCGTGCTCGCCTCGCTCGGCGACGA CTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTGTGG ] [+] EMBL AU071136 [ CGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAACTCCCGCGCCGTGCTCGCGTCGCTCGGCGACGAGCTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTAT GNTGCGCGTGATTATATATTGGTTACTAGGTTTTGATCGATGTACGTAATGCATGTTAATCGATCGTCTCCTGTATGTACGTGTCGTTCATCTGCTGTTCATTGTCTCCACTGATTTCTTTTGTTCTCTTTGTACGTAGTACGAGTTTCACAGAAGAAATGAACAGAACGGTCAGTTTAGATCGGTAACGTTAAAAAA] consensusID : consensus_14654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 431 fasta sequence [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT-CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG-CGGCCGTGACGCGGGA-GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC-AAGGAGGAGC-TGG-CCGCGA-TGC-TCGCCG-AGGCGGATT-AC-GCC-GGGG-AGC-TCGTGCTTTG-AGGAG-ATCG-CGGCCGCAA-CGCGG-TGGAGCTTCAANTTTTGTTNCCTTTAAGTNAAGGGTTAAA] [+] EMBL AU197355 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TTG CCGCGA TGCTTCGCCG AGGCGGATT AC GCC GGGG AGCTTCGTGCTTTG AGGAG ATCG CGGCCGCAA CGCGG TGGAGCTTCAANTTTTGTTNCCTTTAAGTNAAGGGTTAAA] [+] EMBL AU164381 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGCTTGG CCGCGA TGCTTCGCCGAAGGCGGATT ACGGCC GGGG AGCTTCGTNCTTNGAAGGAG ATCGNGGGCCGCAACCGNGGTTGGAGCTTCAAGTTTTtg ] [+] EMBL AU164382 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGGCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTNCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAAGGAGGAGCTTGG NCGCGA TGT TCGCCG AGGCGGATTAAC GGC GGGGAAGCTTCGTGCTTNGAAGGAGAATCG GGGnc ] [+] EMBL AU164356 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TTG CCGCGATTNT TNGCCG AGGCGGATT AN GCCGGGGG AG TNGTGC TTG AGGAG ATCG CGGCCGCA ] [+] EMBL AU164334 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGGTCGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TGG CCGCGA TGC TCGCCG AGGCGGATT AC GCC GGGG AGC TCGTGCT ] [+] EMBL AU197282 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TGG CCGCGA TGC TCGCCG AGGCGGATT AC GCC GGGG AGC TCGTGC ] [+] EMBL AU164374 [ATTTCTAAAGACATCGCCATGATGAAG TTGCGCATTTGTTCCGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGNAGGNGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCNCCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCT CTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGG CCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TGGACCGCGA TGC TCGCCG AGGCGGATT AC GCC GGGG AGC TCGTGCT ] [+] EMBL AU164328 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGNCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TTG CCGCGA TTCTTTGCCG AGGCGG ] [+] EMBL AU164391 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCNGCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGNCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTNCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGTGGGA GGACCTGGAGGTGGCCCTNCGGAGGATCGTNTCGAGC AAGGAGGAGC TGG CCGCGA TNT TCGCCG A ] [+] EMBL AU070064 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGNCACCACGTCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTNCTNCGGCAACAAGAAGCCGGCGGGGG CGGCCGTGACGGGGGAGGGACCTGGAGGTGGCCCT CGGAGGATCG ] consensusID : consensus_14654#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence [AGGAGACGTTTCGCGGGTGTTCGACGNCCGNCGGGGAACGGGAAGNATCTCCGCCGAGGAGCTCCGCGNCCGTGCTCGCCTCGCTTCGGGNACNAAGCTTTGTTCCGTCGNACAACTGCCGCCGAATGATCGGCGGCGTGGACACCGACGGCGNACGGGTTCGTCTGTTTCNACNAGTTCGCCCGCATGATGATGTGTGG] [+] EMBL AU176506 [AGGAGACGTTTCGCGGGTGTTCGACGNCCGNCGGGGAACGGGAAGNATCTCCGCCGAGGAGCTCCGCGNCCGTGCTCGCCTCGCTTCGGGNACNAAGCTTTGTTCCGTCGNACAACTGCCGCCGAATGATCGGCGGCGTGGACACCGACGGCGNACGGGTTCGTCTGTTTCNACNAGTTCGCCCGCATGATGATGTGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14654#0 AGCTTGCACATTTGTTCGGCTCTTCTTCTTCTTCGTCTTCGTCTTCCTCCAAGAAGAGGA 60 consensus_14654#2 ------------------------------------------------------------ consensus_14654#1 ------------------------------------------------------------ consensus_14654#0 GGAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCTTCGTCGT 120 consensus_14654#2 ------------------------------------------------------------ consensus_14654#1 ------------------------------------------------------------ consensus_14654#0 CGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGT 180 consensus_14654#2 ------------------------------------------------------------ consensus_14654#1 ------------------------------------------------------------ consensus_14654#0 TGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGA 240 consensus_14654#2 ------------------------------------------------------------ consensus_14654#1 ------------------------------------------------------------ consensus_14654#0 CGCGGGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCG 300 consensus_14654#2 ------------------------------------------------------------ consensus_14654#1 ------------------------------------------------------------ consensus_14654#0 CGATGCTCGCCGAGGCGGAGTGCGCCGGGGAGCTCGTGCTGGAGGAGATCGCGGCCGCGG 360 consensus_14654#2 ------------------------------------------------------------ consensus_14654#1 ------------ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTTCGGCTCT 48 consensus_14654#0 CGGCGGACGAGGGCGAGCTGAAGGAGACGTT-CGCGG-TGTTCGACGCC-GACGGGGAC- 416 consensus_14654#2 ---------------------AGGAGACGTTTCGCGGGTGTTCGACGNCCGNCGGGGAAC 39 consensus_14654#1 TCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGG-TGAGCAGCAAGAAGAGGAGGAG 107 * ** * ** ** * * ** * consensus_14654#0 -GGG---AGGATCTCCGCCGAGGAGCTCCGCGCC-GTGCTCGCG-TCGCTC--GGCGACG 468 consensus_14654#2 GGGA---AGNATCTCCGCCGAGGAGCTCCGCGNCCGTGCTCGCC-TCGCTTCGGGNACNA 95 consensus_14654#1 CGGCGCCAAGAGCTGCTCCTTCG-GCTCCACCAC-GTCCTCGTCGTCGTTGGCGGCGTCA 165 ** * * ** * ** * ***** * * ** **** *** * ** consensus_14654#0 AGCTCTGCTCCGTCGA-CGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGA- 526 consensus_14654#2 AGCTTTGTTCCGTCGNACAACTGCCGCCGAATGATCGGCGGCGTGGACACCGACGGCGNA 155 consensus_14654#1 TCATCCGATGATTCCG-CCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGG- 223 * * * ** * * ** * **** * * * *** ** ***** consensus_14654#0 CGGGTTCGTCTGCTTCGACGAGTTCGCCCGCA----TGATGATGTATGGCTGCGCGTGAT 582 consensus_14654#2 CGGGTTCGTCTGTTTCNACNAGTTCGCCCGCA----TGATGATGTGTGG----------- 200 consensus_14654#1 CGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGGCGGCCGTGACGCGGGAGGACCTGGAGG 283 ** ** ** * * * * ** * ** *** * * consensus_14654#0 TATATATTGGTTACTAGGTTTTGATCGATGTACGTAATGCATGTTAATCGATCGTCTCCT 642 consensus_14654#2 ------------------------------------------------------------ consensus_14654#1 TGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGG 343 consensus_14654#0 GTATGTACGTGTCGTTCATCTGCTGTTCATTGTCTCCACTGATTTCTTTTGTTCTCTTTG 702 consensus_14654#2 ------------------------------------------------------------ consensus_14654#1 ATTACGCCGGGGAGCTCGTGCTTTGAGGAGATCGCGGCCGCAACGCGGTGGAGCTTCAAN 403 consensus_14654#0 TACGTAGTACGAGTTTCACAGAAGAAATGAACAGAACGGTCAGTTTAGATCGGTAACGTT 762 consensus_14654#2 ------------------------------------------------------------ consensus_14654#1 TTTTGTTNCCTTTAAGTNAAGGGTTAAA-------------------------------- 431 consensus_14654#0 AAAAAA 768 consensus_14654#2 ------ consensus_14654#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||