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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1483 fasta sequence
[CGTATCGTTGGCTCCGCCTCTCCTAGGGTTTTAGCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCCCGCCGCCTCCTCCTCCTCACGCTTCGCAATCCCTTCCACCACCTCGCCGCGGCGGCGACGAGCGGGCGGCGCCGGCGGCGCAGGCGCAGGCGCGGGGGCGGCGGAGATGGACCGGTACCAGAGGGTGGAGCGGCCGCGGCCGGAGTCGGCCATCGAGGAGAACGAGATCCGCATCACCGCGCAGGGGCTCATCCGCAACTACGTCTCCTACGCCACGTCCCTCCTCCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG-CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT-GAAGACTCCTATGT-CCGGGGTCGTGG-CAGAGGAAGGGGGCGTGGACGTGGAA-GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAAA]
[+] EMBL AK071715 [CGTATCGTTGGCTCCGCCTCTCCTAGGGTTTTAGCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCCCGCCGCCTCCTCCTCCTCACGCTTCGCAATCCCTTCCACCACCTCGCCGCGGCGGCGACGAGCGGGCGGCGCCGGCGGCGCAGGCGCAGGCGCGGGGGCGGCGGAGATGGACCGGTACCAGAGGGTGGAGCGGCCGCGGCCGGAGTCGGCCATCGAGGAGAACGAGATCCGCATCACCGCGCAGGGGCTCATCCGCAACTACGTCTCCTACGCCACGTCCCTCCTCCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTAT ]
[+] EMBL AU064231 [ CCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTATGGAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAANGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATA ]
[+] EMBL OS0595A [ CCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAAGGGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTTGGTATGG AACAATCAAGGTGGGTACAACCAAGGTGGTGGGTATTATGGTAACCAAGGTNGGTATGGTGGTTAT ]
[+] EMBL AU091626 [ TATTGAAGAAGCCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTC ATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCC GCAACAGCCGCTCCTCCAGCCAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGTCCCGGGGTCGTGGNCAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGA ]
[+] EMBL AK059602 [ GTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTGTGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACC ]
[+] EMBL AA754283 [ cGAGAAGAACTCTHCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTRGSTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGG AACTACCARG AAATGGTGGATATAACCGAGGACGGGGTDGGAWGCGCGGGAGGGGMAATTGGAATTACCGTGGCGGGTACGAACGAGGMARAGGTGGCGGTTTTCCTGGTGGAA GGGRTATGGC GSCSCGGGCGGGGAAGAATGGGTGGCC TGGTGGRCGAGGAAACTRAARATCCAARCARTGAGCA ATGGGTGAG RRATCCAT ]
[+] EMBL AU094657 [ GCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCTTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGA ]
[+] EMBL CA753752 [ AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAA ]
[-] EMBL BI306414 [ GAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCT ]
[+] EMBL CF329994 [ CCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAA ]
[-] EMBL CF329993 [ CCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAAA]
consensusID : consensus_14657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGGGTTGGTTATCACCTGCTGGCCAGTTTTGCTTGTTTCTCACGGGTCGATGAATGCTGAACATGCCTCTATGTTCCTGCCCGCCGTATTTACCTGATGCTATAAAATCCTGCCTCTATGCTGAGNCATCCCCTATGTTTTTACACCTACCCACCGCCCTCTGTCTGCCTGCGACTCCGTTGTCCACCCTCGGGGCCGNNCCGGGACCCGCGTCCGCCCTGTGCGGGACGTGCTTCCGCCGCGTCGCGCGTCGCCGTTCCCCCCTCGTTGC]
[+] EMBL CA755688 [AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGGGTTGGTTATCACCTGCTGGCCAGTTTTGCTTGTTTCTCACGGGTCGATGAATGCTGAACATGCCTCTATGTTCCTGCCCGCCGTATTTACCTGATGCTATAAAATCCTGCCTCTATGCTGAGNCATCCCCTATGTTTTTACACCTACCCACCGCCCTCTGTCTGCCTGCGACTCCGTTGTCCACCCTCGGGGCCGNNCCGGGACCCGCGTCCGCCCTGTGCGGGACGTGCTTCCGCCGCGTCGCGCGTCGCCGTTCCCCCCTCGTTGC]
consensusID : consensus_14657#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 460 fasta sequence
[CTAGATTACCTCACTAAGGGAATAGC-TGCGGTCGCGGGCGGGGAAGAATGGGTGG-CGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGTTTGGTTNGTTGTTTTCCCT-GAGCGCGAGGTTTGGTTGTGA-GCATAATGCCTTTTTCCCAAAGGTATCCT-GTAGTCTTTCGAT-GATGTTCGG-GTATCATC-CTGTAGTCAATCTTTCAG-TGTTGGTTATCAGCT-GCTGGCGA-GTTTTGC-TTGTTTCTCA-ATGGT--CGATGAATGCTGAGCATGC-CTCTATGTTCA-TGCCCGTCGTATTTAC-CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA]
[+] EMBL CB967225 [CTAGATTACCTCACTAAGGGAATAGC TGCGGTCG GGGCGGGGAAG ACGGGTGG CCGGGT GACGAGG AACTGAAGATCCAAGCAG GAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT GGGAGCCCTCATGTTTGGTTNGTTGTTTTCCCT GAGCGCGAGGTTTGGTTGTGA GCATAATGCCTTTTTCCCAAAGGTATCCT GTAGTCTTTCGAT GATGTTCGG GTATCATC CTGTAGTCAATCTTTCAG TGTTGGTTATCAGCT GCTGGCGA GTTTTGC TTGTTTCTCA ATGGT CGATGAATGCTGAGCATGC CTCTATGTTCA TGCCCGTCGTATTTAC CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA]
[+] EMBL CB964852 [ ACCTCACTAAGGGAATAGC TGCGG CGCGGGCGGGGAAGAATGGGTGG CGTGGTGGACGAGGAAACTGAAGAT CAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT GGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCT GAGCGCGAGGTTTGGTTGTGA GCATAATGCCTTTTTCCCAAAGGTATCCT GTAGTCTTTCGAT GATGTTCGG GTATCATC CTGTAGTCAATCTTTCAG TGTTGGTTATCAGCT GCTGGCGA GTTTTGC TTGTTTCTCA ATGGT CGATGAATGCTGAGCATGC CTCTATGTTCA TGCCCGTCGTATTTAC CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA]
[+] EMBL CB967477 [ cAGGGACTACCTTGCGGTCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCA GGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT GGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCT GAGCGCGAGGTTTGGTTGTGA GCATAATGCCTTTTTCCCAAAGGTATCCT GTAGTCTTTCGAT GATGTTCGG GTATCATC CTGTAGTCAATCTTTCAG TGTTGGTTATCAGCT GCTGGCGA GTTTTGC TTGTTTCTCA ATGGT CGATGAATGCTGAGCATGC CTCTATGTTCA TGCCCGTCGTATTTAC CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA]
[+] EMBL CB967234 [ AATAGC TGCGG CGCGGGCGGGGAAGAATGGGTGG CGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTNGGGAGCCCTCATGTTTGGTTNGTTGTTTTCCCTNGAGCGCGAGGTTTGGTTGTGACGCATAATGCCTTTTTCCCAAAGGTATCCTNGTAGTCTTTCGATNGATGTTCGGTGTATCATCNCTGTAGTCAATCTTTCAGTTGTTGGTTATCAGCTNGCTGGCGACGTTTTGCGTTGTTTCTCANATGGTTNCGATGAATGCTGAGCATGCNCTCTATGTTCANTGCCCGTCGTATTTACNCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA]
consensusID : consensus_14657#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence
[GGGGAAGAATGGGTGGCCGTGGTTGACGATGAAACTGAATGATCCATGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGTGTAAAAAAGTTATCTATTTATGTGTTTGGGAGCCCTCATGTCTTGGTTTTGTTTGTTTTCCCTTGAGCGCTGAGGTTTGGTTGTTGAGCATAAGTGCCTTTTTCCCAACAGGTATCCTGTTAGTCTTTCAGATGATGTTCTGGGTATCATCCTNGTAGTCAATCTTTCAGTTGTTGGTTATCGAGCTGCTGGCGATGTTTTTGCTTATTTCTCAGATGGTCGCATGAATGGCTGATGCATGCCTCGTATGTTCATGCCCTGTCGTATTTACCTTGATGTTATTAAATTCATGCCTCTAGTGCTGAGCAAAAAAAAAAAAAAAAAACA]
[+] EMBL CB964849 [GGGGAAGAATGGGTGGCCGTGGTTGACGATGAAACTGAATGATCCATGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGTGTAAAAAAGTTATCTATTTATGTGTTTGGGAGCCCTCATGTCTTGGTTTTGTTTGTTTTCCCTTGAGCGCTGAGGTTTGGTTGTTGAGCATAAGTGCCTTTTTCCCAACAGGTATCCTGTTAGTCTTTCAGATGATGTTCTGGGTATCATCCTNGTAGTCAATCTTTCAGTTGTTGGTTATCGAGCTGCTGGCGATGTTTTTGCTTATTTCTCAGATGGTCGCATGAATGGCTGATGCATGCCTCGTATGTTCATGCCCTGTCGTATTTACCTTGATGTTATTAAATTCATGCCTCTAGTGCTGAGCAAAAAAAAAAAAAAAAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14657#0 CGTATCGTTGGCTCCGCCTCTCCTAGGGTTTTAGCTCCCCTCTCCCCTCCCCTCCCCTCC 60
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 CCTCCCGCCGCCTCCTCCTCCTCACGCTTCGCAATCCCTTCCACCACCTCGCCGCGGCGG 120
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 CGACGAGCGGGCGGCGCCGGCGGCGCAGGCGCAGGCGCGGGGGCGGCGGAGATGGACCGG 180
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 TACCAGAGGGTGGAGCGGCCGCGGCCGGAGTCGGCCATCGAGGAGAACGAGATCCGCATC 240
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 ACCGCGCAGGGGCTCATCCGCAACTACGTCTCCTACGCCACGTCCCTCCTCCAGGATCGG 300
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 AGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTT 360
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 GCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTC 420
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 AGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGT 480
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 CATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGG 540
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 TACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAGCAGGCGCCA 600
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 CCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTATGAAGACTCCTATGTCCGG 660
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 GGTCGTGGCAGAGGAAGGGGGCGTGGACGTGGAAGGGGTTGGGGTAGAGGAGGTTATGGT 720
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 GGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGAT 780
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 AACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAA 840
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 GGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAA 900
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 AATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGT 960
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ------------------------------------------------------------
consensus_14657#0 GGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGC 1020
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 -------------------------CTAGATTACCTCACTAAGGGAATAGCTGCGGTCGC 35
consensus_14657#1 --------------AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGC 46
consensus_14657#0 GGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAA-GATCCAAGCAGTGAGC 1079
consensus_14657#3 ----GGGGAAGAATGGGTGGCCGTGGTTGACGATGAAACTGAATGATCCATGCAGTGAGC 56
consensus_14657#2 GGGCGGGGAAGAATGGGTGGC-GTGGTGGACGAGGAAACTGAA-GATCCAAGCAGTGAGC 93
consensus_14657#1 GGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAA-GATCCAAGCAGTGAGC 105
***************** ***** ***** ********* ****** *********
consensus_14657#0 AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 1139
consensus_14657#3 AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 116
consensus_14657#2 AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 153
consensus_14657#1 AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 165
************************************************************
consensus_14657#0 ATCAGGG-AAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGT-TTGGTTTG--TT 1194
consensus_14657#3 ATCAGTGTAAAAAAGTTATCTATTTATGTGTTTGGGAGCCCTCATGTCTTGGTTTTGTTT 176
consensus_14657#2 ATCAGGG-AAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGT-TTGGTTNG--TT 208
consensus_14657#1 ATCAGGG-AAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGT-TTGGTTTG--TT 220
***** * ************************ ************** ****** **
consensus_14657#0 GTTTTCCCT-GAGCGC-GAGGTTTGGTTGT-GAGCATAA-TGCCTTTTTCCCAA-AGGTA 1249
consensus_14657#3 GTTTTCCCTTGAGCGCTGAGGTTTGGTTGTTGAGCATAAGTGCCTTTTTCCCAACAGGTA 236
consensus_14657#2 GTTTTCCCT-GAGCGC-GAGGTTTGGTTGT-GAGCATAA-TGCCTTTTTCCCAA-AGGTA 263
consensus_14657#1 GTTTTCCCT-GAGCGC-GAGGTTTGGTTGT-GAGCATAA-TGCCTTTTTCCCAA-AGGTA 275
********* ****** ************* ******** ************** *****
consensus_14657#0 TCCTGT-AGTCTTTC-GATGATGTTC-GGGTATCATCCTG-TAGTCAATCTTTCAGT-GT 1304
consensus_14657#3 TCCTGTTAGTCTTTCAGATGATGTTCTGGGTATCATCCTNGTAGTCAATCTTTCAGTTGT 296
consensus_14657#2 TCCTGT-AGTCTTTC-GATGATGTTC-GGGTATCATCCTG-TAGTCAATCTTTCAGT-GT 318
consensus_14657#1 TCCTGT-AGTCTTTC-GATGATGTTC-GGGTATCATCCTG-TAGTCAATCTTTCAGG-GT 330
****** ******** ********** ************ *************** **
consensus_14657#0 TGGTTATC-AGCTGCTGGCGAG--TTTTGCTTGTTTCTCA-ATGGTCG-ATGAATG-CTG 1358
consensus_14657#3 TGGTTATCGAGCTGCTGGCGATGTTTTTGCTTATTTCTCAGATGGTCGCATGAATGGCTG 356
consensus_14657#2 TGGTTATC-AGCTGCTGGCGAG--TTTTGCTTGTTTCTCA-ATGGTCG-ATGAATG-CTG 372
consensus_14657#1 TGGTTATC-ACCTGCTGGCCAG--TTTTGCTTGTTTCTCA-CGGGTCG-ATGAATG-CTG 384
******** * ******** * ******** ******* ***** ******* ***
consensus_14657#0 A-GCATGCCTC-TATGTTCATGCCC-GTCGTATTTACCT-GATGTTATTAAATTCATGCC 1414
consensus_14657#3 ATGCATGCCTCGTATGTTCATGCCCTGTCGTATTTACCTTGATGTTATTAAATTCATGCC 416
consensus_14657#2 A-GCATGCCTC-TATGTTCATGCCC-GTCGTATTTACCT-GATGTTATTAAATTCATGCC 428
consensus_14657#1 A-ACATGCCTC-TATGTTCCTGCCC-GCCGTATTTACCT-GATGCTATAAAATCC-TGCC 439
* ******** ******* ***** * *********** **** *** **** * ****
consensus_14657#0 TCTA-TGCTGAGCAATCCCCTATGTTATTA-AATTGTTCATTCAATTTGTGCAGTTTTCT 1472
consensus_14657#3 TCTAGTGCTGAGCAAAAAAAAAAAAAAAAA-ACA-------------------------- 449
consensus_14657#2 TCTA-TGCTGAGCAAAAAAAAAAAAAAAAA-ACA-------------------------- 460
consensus_14657#1 TCTA-TGCTGAGNCATCCCCTATGTTTTTACACCTACCCACCGCCCTCTGTCTGCCTGCG 498
**** ******* * * * *
consensus_14657#0 TCAAAAAAAAA------------------------------------------------- 1483
consensus_14657#3 ------------------------------------------------------------
consensus_14657#2 ------------------------------------------------------------
consensus_14657#1 ACTCCGTTGTCCACCCTCGGGGCCGNNCCGGGACCCGCGTCCGCCCTGTGCGGGACGTGC 558
consensus_14657#0 --------------------------------------
consensus_14657#3 --------------------------------------
consensus_14657#2 --------------------------------------
consensus_14657#1 TTCCGCCGCGTCGCGCGTCGCCGTTCCCCCCTCGTTGC 596
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||