These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 2399 fasta sequence [AGGATGATGCGGCGGAGGAGGAGGAGGATCTCGACCTGCCCACGGCGTTCGGGCAGCGGATCGCGGAGGGCGCGAGGGCGAGGCGGGAGGAGAGGGCGCGGGAGCGGGAGACGGCCGCGCGGCGCAGGCAGGCGTCGGGGGTGGCCTCCGGGAAGCCGGCGCCGGCTCTGGGGAGCCTGGGGTCCAACACGAAGGTGGCCAAGATGATGGCCATGATGGGGTACAAGGATGGGATGGGGCTCGGCAAGAACGAGCAAGGTATAGTCGCGCCGGTGGAGACCACTCTGCGCCCCAAGAACGCCGGTCTCGGAAGCGTCGAGGGGTTCAAGGAGCCCAAGCCATTCTTTACTAAGGAGAATTTGCCGCCTCCGCCTCCACCGGCGCCCGCCAAGAAGGAGCAGCAGAGGTGGTCGAAGAAGGCCGGTGCGAAGAAAGGCCCCGTGCTGACGAAGAACGAGTTGCTGGCGATGCGCAGCGAGCAGGAGCAGGACGAGCAGCCTACGGTTGTGCAGAAGGTGATCGACATGCGAGGGCCTCAGGCACGCGTGCTAACGGACTTGAAGGGGCTCAACGTGGAGCAGGAGATGGAGGCGAACGATGTGCCGATGCCAGAGTTGCAATACAATGTGAGGCTGCTTGTCGATGAGGCCAAGGCTGATATTGTGAGGCTGGATGGGCAGCTGCGACGGGAGCAGGAGAAGGTGGCAAGCTTAGTGCGGGAGAAGGAGAAAGTGGCAAAACAGGAGGCTTTGCAGAAACGCCAACTACAAGTTATGGAGAAGATTGCAGGAGTGCTGGAGCAGGTCCGAGTGGATGATACTGCAGGTATTCTCTCTCTGGAAGGGTTGCTTAAGACCTTTCAGGAATTGAAGGCATGCTACGTGGAGGAATTCAAGATGTGCAGTGTTGCATGGATTGCCTGCCGGTTTGCTCATCCGCTACTAATCCGAGTCTTCCAGGGGTGGCAACCACTGCAAAATCCGTTGTTTGGCTTGGAGATCATGTCATCATGGAAAGATTTGCTGCAGGGGGATCAAGCATATGACTTCTCAGGTGATGTTGAATCGATGGCTCCATATGCACAATTGGTTTGCGAGGTCATCCTACCCGCTGTGAGGATATCAGGAACCAATTCATGGGAGGCTAGGGATCCAGAACCAATGCTTCGGTTTCTTGAATCATGGGAACGGTTGCTGCCCCCTATCGTGCTCCAGTCAATATTGGAGCATGTCATAATGCCAAAGCTTTCAGCTGCAGTAGATTCTTGGGACCCACGCAGGGAGAAGGTACCAATCCATGTATGGGTGCATCCATGGTTGCCAATGCTAGGACAGAGGATAGATACCTTGTGCCATTCTATTCGATACAAACTGAGTAGTGTTCTCCATGTTTGGCAAGCTCACGATGCATCAGCCTATGCTGTGTTGTCTCCATGGAAGGATGTATTTGATGCCGCAAGCTGGGAAGACTTGATTGTGCGTTATATCGTACCAAAATTGAAAATGGCACTTCAAGAATTTCAGATCAACCCTGC-AAACCAGAAACTCGACCAGTTCAACTGGGTAATGATTTGGGCTTCTGCAATTCCAGTACACCATATGGTCCATATGTTGGAAGTAGATTTCTTCAGCAAGTGGCAGCAGGTCCTGTACCATTGGCTGTGTTCACCAAATCCTGATTTCAATGAAATCATGAACTGGTACAAGGGCTGGAAGGGCCTTTTCCCACCAGAATTGCTTGCCAATGAGCGCATACGGATGCTTTTAACGGCTGGCCTTGACATGATGAACCGAGCTGCTGAAGGCCTTGAGGTGGTGCAACCTGGCGCTAGGGAAAATGTGGGCTACTTGAGAGCAACAGAGAAGAGGCAATTTGATGCAGCACAGCAAGCATCACAATACATGACTCACCATGCGGTGCCAGGAGCAGCCATGGCGGATATGAGCTTTAAGGAGTCTATCCAGGCATATGCAATGGACCAAGGCTTATTGTTTATGCCCAGAGTTGGTAAATTCTACAATGGTATGCCAGTGTATGAGTTTGGCACCGTAAGTATTTGCATCGACTCTGTGAAGCGCCTACTCTACGCACAACTTCAAGAAGGAATTGAGAGATGGAGTGCTGTCTCTCTTACACAATTGATAGAAATGAACCGGAAGGCGAGGCAACGCTAGTTGATCATCCTATTGTGTACTATTACTAAAAGGTGTCAGTTTTGATCATCATTGTAGAATATTTCTAAAGAGCAGATGGTTTAATGATGTATCTGAACAGGTTGTTGTTTGGCCTAGTAACTTTGTAGTATTTATATTCATGCTTTAATATGCACCGTGGTGCCTTTTTCTTGCCATAGAATGAACAAATGATTTATTAACTATTAGTTATCACCATGACAATTG] [+] EMBL AK073946 [AGGATGATGCGGCGGAGGAGGAGGAGGATCTCGACCTGCCCACGGCGTTCGGGCAGCGGATCGCGGAGGGCGCGAGGGCGAGGCGGGAGGAGAGGGCGCGGGAGCGGGAGACGGCCGCGCGGCGCAGGCAGGCGTCGGGGGTGGCCTCCGGGAAGCCGGCGCCGGCTCTGGGGAGCCTGGGGTCCAACACGAAGGTGGCCAAGATGATGGCCATGATGGGGTACAAGGATGGGATGGGGCTCGGCAAGAACGAGCAAGGTATAGTCGCGCCGGTGGAGACCACTCTGCGCCCCAAGAACGCCGGTCTCGGAAGCGTCGAGGGGTTCAAGGAGCCCAAGCCATTCTTTACTAAGGAGAATTTGCCGCCTCCGCCTCCACCGGCGCCCGCCAAGAAGGAACAGCAGAGGTGGTCGAAGAAGGCCGGTGCGAAGAAAGGCCCCGTGCTGACGAAGAACGAGTTGCTGGCGATGCGCAGCGAGCAGGAGCAGGACGAGCAGCCTACGGTTGTGCAGAAGGTGATCGACATGCGAGGGCCTCAGGCACGCGTGCTAACGGACTTGAAGGGGCTCAACGTGGAGCAGGAGATGGAGGCGAACGATGTGCCGATGCCAGAGTTGCAATACAATGTGAGGCTGCTTGTCGATGAGGCCAAGGCTGATATTGTGAGGCTGGATGGGCAGCTGCGACGGGAGCAGGAGAAGGTGGCAAGCTTAGTGCGGGAGAAGGAGAAAGTGGCAAAACAGGAGGCTTTGCAGAAACGCCAACTACAAGTTATGGAGAAGATTGCAGGAGTGCTGGAGCAGGTCCGAGTGGATGATACTGCAGGTATTCTCTCTCTGGAAGGGTTGCTTAAGACCTTTCAGGAATTGAAGGCATGCTACGTGGAGGAATTCAAGATGTGCAGTGTTGCATGGATTGCCTGCCGGTTTGCTCATCCGCTACTAATCCGAGTCTTCCAGGGGTGGCAACCACTGCAAAATCCGTTGTTTGGCTTGGAGATCATGTCATCATGGAAAGATTTGCTGCAGGGGGATCAAGCATATGACTTCTCAGGTGATGTTGAATCGATGGCTCCATATGCACAATTGGTTTGCGAGGTCATCCTACCCGCTGTGAGGATATCAGGAACCAATTCATGGGAGGCTAGGGATCCAGAACCAATGCTTCGGTTTCTTGAATCATGGGAACGGTTGCTGCCCCCTATCGTGCTCCAGTCAATATTGGAGCATGTCATAATGCCAAAGCTTTCAGCTGCAGTAGATTCTTGGGACCCACGCAGGGAGAAGGTACCAATCCATGTATGGGTGCATCCATGGTTGCCAATGCTAGGACAGAGGATAGATACCTTGTGCCATTCTATTCGATACAAACTGAGTAGTGTTCTCCATGTTTGGCAAGCTCACGATGCATCAGCCTATGCTGTGTTGTCTCCATGGAAGGATGTATTTGATGCCGCAAGCTGGGAAGACTTGATTGTGCGTTATATCGTACCAAAATTGAAAATGGCACTTCAAGAATTTCAGATCAACCCTGC AAACCAGAAACTCGACCAGTTCAACTGGGTAATGATTTGGGCTTCTGCAATTCCAGTACACCATATGGTCCATATGTTGGAAGTAGATTTCTTCAGCAAGTGGCAGCAGGTCCTGTACCATTGGCTGTGTTCACCAAATCCTGATTTCAATGAAATCATGAACTGGTACAAGGGCTGGAAGGGCCTTTTCCCACCAGAATTGCTTGCCAATGAGCGCATACGGATGCTTTTAACGGCTGGCCTTGACATGATGAACCGAGCTGCTGAAGGCCTTGAGGTGGTGCAACCTGGCGCTAGGGAAAATGTGGGCTACTTGAGAGCAACAGAGAAGAGGCAATTTGATGCAGCACAGCAAGCATCACAATACATGACTCACCATGCGGTGCCAGGAGCAGCCATGGCGGATATGAGCTTTAAGGAGTCTATCCAGGCATATGCAATGGACCAAGGCTTATTGTTTATGCCCAGAGTTGGTAAATTCTACAATGGTATGCCAGTGTATGAGTTTGGCACCGTAAGTATTTGCATCGACTCTGTGAAGCGCCTACTCTACGCACAACTTCAAGAAGGAATTGAGAGATGGAGTGCTGTCTCTCTTACACAATTGATAGAAATGAACCGGAAGGCGAGGCAACGCTAGTTGATCATCCTATTGTGTACTATTACTAAAAGGTGTCAGTTTTGATCATCATTGTAGAATATTTCTAAAGAGCAGATGGTTTAATGATGTATCTGAACAGGTTGTTGTTTGGCCTAGTAACTTTGTAGTATTTATATTCATGCTTTAATATGCACCGTGGTGCCT ] [+] EMBL CB682317 [AGGATGATGCGGCGGAGGAGGAGGAGGATCTCGACCTGCCCACGGCGTTCGGGCAGCGGATCGCGGAGGGCGCGAGGGCGAGGCGGGAGGAGAGGGCGCGGGAGCGGGAGACGGCCGCGCGGCGCAGGCAGGCGTCGGGGGTGGCCTCCGGGAAGCCGGCGCCGGCTCTGGGGAGCCTGGGGTCCAACACGAAGGTGGCCAAGATGATGGCCATGATGGGGTACAAGGATGGGATGGGGCTCGGCAAGAACGAGCAAGGTATAGTCGCGCCGGTGGAGACCACTCTGCGCCCCAAGAACGCCGGTCTCGGAAGCGTCGAGGGGTTCAAGGAGCCCAAGCCATTCTTTACTAAGGAGAATTTGCCGCCTCCGCCTCCACCGGCGCCCGCCAAGAAGGAGCAGCAGAGGTGGTCGAAGAAGGCCGGTGCGAAGAAAGGCCCCGTGCTGACGAACAACGAGTTGCTGGCGATGCGCATCGAGCAGGAGCAGGAC ] [+] EMBL CB635097 [ GAGGACAGGGCGCGGGAGCGGGAGACGGCCGCGCGGCGCAGGCAGGCGTCGGGGGTGGCCGCCGGGAAGCCGGCGCCGGCTCTGGGGAGCCTGGGGTCCAACACGAAGGTGGCCAAGATGATGGCCATGATGGGGTACAAGGATGGGATGGGGCTCGGCAAGAACGAGCAAGGTATAGTCGCGCCGGTGGAGACCACTCTGCGCCCCAAGAACGCTGGTCTCGGAAGCGTCGAGGGGTTCAAGGAGCCCAAGCCCTTCTTTACCAAGGAGAATTTGCCGCCTCCGCCTCCGCCGGCGCCCGCCAAGAAGGAGCAGCAGAGGTGGTCGAAGAAGGCCGGTGCGAAGAAAGGCCCCGTGCTGACGAAGAATGAGTTGCTTGCGATGCGCAGCGAGCAGGAGCAGGATGAGCAGCCTACAGTTGTCCAGAAGGTGATCGACATGCGAGGGCCTCAGGCACGCGTGCTAACGGACTTGAAGGGGCTCAACGTGGAGCAGGAGATGGAGGCGAATGATGTGCCGATGCCAGAGTTGCAATACAATGTGAGGCTGCTTGTCGATGAGGCCAAGGCTGATATTGTGAGGCTGGATGGGCAGCTGCGACGGGAGCAGGAGAAGGTGGCAAGCTTGGTGCGGGAGAAGGAGAAAGTGGCAAAACAGGAGGCTTTGCAGAAATGCCAACTACAAGTTATGGAGAAGATAGCAGGAGTGCTGGAGCAGGTCCGAGTGGATGATACTGCANGTGTTCTCTCTTTGGAAGGGTTGC ] [+] EMBL CB635604 [ GAGGAGAGGGCGCGGGAGCGGGAGACGGCCGCGCGGCGCAGGCAGGCGTCGGGGGTGGCCGCCGGGAAGCCGGCGCCGGCTCTGGGGAGCCTGGGGTCCAACACGAAGGTGGCCAAGATGATGGCCATGATGGGGTACAAGGATGGGATGGGGCTCGGCAAGAACGAGCAAGGTATAGTCGCGCCGGTGGAGACCACTCTGCGCCCCAAGAACGCTGGTCTCGGAAGCGTCGAGGGGTTCAAGGAGCCCAAGCCCTTCTTTACCAAGGAGAATTTGCCGCCTCCGCCTCCGCCGGCGCCCGCCAAGAAGGAGCAGCAGAGGTGGTCGAAGAAGGCCGGTGCGAAGAAAGGCCCCGTGCTGACGAAGAATGAGTTGCTTGCGATGCGCAGCGAGCAGGAGCAGGATGAGCAGCCTACAGTTGTCCAGAAGGTGATCGACATGCGAGGGCCTCAGGCACGCGTGCTAACGGACTTGAAGGGGCTCAACGTGGAGCAGGAGATGGAGGCGAATGATGTGCCGATGCCAGAGTTGCAATACAATGTGAGGCTGCTTGTCGATGAGGCCAAGGCTGATATTGTGAGGCTGGATGGGCAGCTGCGACGGGAGCAGGAGAAGGTGGCAAGCTTGGTGCGGGAGAAGGAGAAAGTGGCAAAACAGGAGGCTTTGCAGAAATGCCAACTACAAGTTATGGAGAAGATAGCAGGAGTGCTGGAGCAGGTCCGAGTGGATGATACTGCAGGTGTTCTCTCTTTGGAAGGGTTGCTn ] [+] EMBL CB666771 [ AGGTATACTCGCGCCGGTGGAGACCACTCTGCGCCCCAAGAACGCCGGTCTCGGAAGCGTCGAGGGGTTCAAGGAGCCCAAGCCATTCTTTACTAAGGAGAATTTGCCGCCTCCGCCTCCACCGGCGCCCGCCAAGAAGGAGCAGCAGAGGTGGTCGAAGAAGGCCGGTGCGAAGAAAGGCCCCGTGCTGACGAAGAACGAGTTGCTGGCGATGCGCAGCGAGCAGGAGCAGGACGAGCAGCCTACGGTTGTGCAGAAGGTGATCGACATGCGAGGGCCTCAGGCACGCGTGCTAACGGACTTGAAGGGGCTCAACGTGGAGCAGGAGATGGAGGCGAACGATGTGCCGATGCCAGAGTTGCAATACAATGTGAGGCTGCTTGTCGATGAGGCCAAGGCTGATATTGTGAGGCTGGATGGGCAGCTGCGACGGGAGCAGGAGAAGGTGGCAAGCTTAGTGCGGGAGAAGGAGAAAGTGGCAAAACAGGAGGCTTTGCAGAAACGCCAACTACAAGTTATGGAGAAGATTGCAGGAGTGCTGGAGCAGGTCCGAGTGGATGATACTGCAGGTATTCTCTCTCTGGAAGGGTTGCTTAAGACCTTTCAGGAATTGAAGGCATGCTACGTGGAGGAATTCAAGATGTGCAGTGTTGCATGGATTGCCTGCCGGTTTGCTCATCCGCTACTAATCCGAGTCTTCCAGGGGTGGCAACCACTGCAAAATCCGTTGTTTGGCTTGGAGATCATGTCATCATGGAAAGATTTGCTGCAGGGGGATCAAGCATATGACTTCTCANGTGATGT ] [+] EMBL CB668625 [ GTTGTGCAGAAGGTGATCGACATGCGAGGGCCTCAGGCACGCGTGCTAACGGACTTGAAGGGGCTCAACGTGGAGCAGGAGATGGAGGCGAACGATGTGCCGATGCCAGAGTTGCAATACAATGTGAGGCTGCTTGTCGATGAGGCCAAGGCTGATATTGTGAGGCTGGATGGGCAGCTGCGACGGGAGCAGGAGAAGGTGGCAAGCTTAGTGCGGGAGAAGGAGAAAGTGGCAAAACAGGAGGCTTTGCAGAAACGCCAACTACAAGTTATGGAGAAGATTGCAGGAGTGCTGGAGCAGGTCCGAGTGGATGATACTGCAGGTATTCTCTCTCTGGAAGGGTTGCTTAAGACCTTTCAGGAATTGAAGGCATGCTACGTGGAGGAATTCAAGATGTGCAGTGTTGCATGGATTGCCTGCCGGTTTGCTCATCCGCTACTAATCCGAGTCTTCCAGGGGTGGCAACCACTGCAAAATCCGTTGTTTGGCTTGGAGATCATGTCATCATGGAAAGATTTGCTGCAGGGGGATCAAGCATATGACTTCTCAGGTGATGTTGAATCGATGGCTCCATATGCACAATTGGTTTGCGAGGTCATCCTACCCGCTGTGAGGATATCAGGAACCAATTCATGGGAGGCTAGGGATCCAGAACCAATGCTTCGGTTTCTTGAATCATGGGAACGGTTGCTGCCCCCTATCGTGCTCCAGTCAATATTGGAGCATGTCATAATGCCAAAGCTTTCAGCTGCAGTAGATTCTTGGGAACCACGCACGGAGAAAGTACCAATCCATGTATGGGTGCATCCATGGT ] [+] EMBL CA998309 [ GTGAGGCTGCTTGTCGATGAGGCCAAGGCTGATATTGTGAGGCTGGATGGGCAGCTGCAACGGGAGCAGGATAAGGTGGCAAGCTTGGTGCGGGAGAAGGAGAAAGTGGCAAAACAGGAGGCTTTGCAGAAATGCCAACTA ] [+] EMBL CB656509 [ AGGCTGATATTGTGAGGCTGGATGGGCAGCTGCGACGGGAGCAGGAGAAGGTGGCAAGCTTAGTGCGGGAGAAGGAGAAAGTGGCAAAACAGGAGGCTTTGCAGAAACGCCAACTACAAGTTATGGAGAAGATTGCAGGAGTGCTGGAGCAGGTCCGAGTGGATGATACTGCAGGTATTCTCTCTCTGGAAGGGTTGCTTAAGACCTTTCAGGAATTGAAGGCATGCTACGTGGAGGAATTCAAGATGTGCAGTGTTGCATGGATTGCCTGCCGGTTTGCTCATCCGCTACTAATCCGAGTCTTCCAGGGGTGGCAACCACTGCAAAATCCGTTGTTTGGCTTGGAGATCATGTCATCATGGAAAGATTTGCTGCAGGGGGATCAAGCATATGACTTCTCAGGTGATGTTGAATCGATGGCTCCATATGCACAATTGGTTTGCGAGGTCATCCTACCCGCTGTGAGGATATCAGGAACCAATTCATGGGAGGCTAGGGATCCAGAACCAATGCTTCGGTTTCTTGAATCATGGGAACGGTTGCTGCCCCCTATCGTGCTCCAGTCAATATTGGAGCATGTCATAATGCCAAAGCTTTCAGCTGCAGTAGATTCTTGGGACCCACGCAGGGAGAAGGTACCAATCCATGTATGGGTGCATCCATGGTTGCCAATGCTAGGACAGAGGATAGATACCTTGTGCCATTCTATTCGATACAAACTGAGTAGTGTTCTCCATGTTTGGCAAGCTCACGATGCATCAGCCTATGC ] [-] EMBL CB635605 [ CAGATCAACCCTGC AAACCAGAAACTCGATCAGTTCAACTGGGTAATGATTTGGGCTTCTGCAATCCCAGTACACCATATGGTCCATATGTTGGAAGTCGATTTCTTCAGCAAGTGGCAGCAGGTCCTCTACCATTGGCTGTGTTCACCAAGTCCTGATTTCAATGAAATCATGAACTGGTACAAGGGCTGGAAGGGCCTTTTTCCACCAGAATTGCTTGCCAATGAGCGCATACGGATGCTTTTAACGGCTGGCCTTGACATGATGAACCGAGCTGCTGAAGGCCTTGAGGTGGTGCAACCTGGCGCTAGGGAAAACGTGGGCTACTTGAGAGCAACAGAGAAGAGGCAATTTGATGCAGCACAGCAAGCATCACAATACACGACTCACCATGCGGTGCCAGGAGCAGCCATGGCGGATTTGAGCTTTAAGGAGTCTATCCAGGCATATGCAATGGACCAAGGCTTATTGTTTATGCCCAGAGTTGGTAAATTCTACAACGGTATGCCAGTGTATGAGTTTGGCACCGTGAGTATTTGCATTGACTCTGTGAAGCGCCTACTCTATGCACAACTTCAAGAAGGAATTGAGAGATGGAGTGCTGTCTCTCTTACACAATTGATAGAAATGAACCGGAAGGCGAGGCAACGCTAATAGATCATCCTATTGTGTACAAGTACTAAAAGGTGTCAGTTTTGATCATCATTGTAGAATCTTTCTCAAGAGCAGATGGTTTAATGATGTATCTGAACAGATTGTTGTTTGGCCTAGTAACTTCATAGTATTTATATTCATGCTTTAATAaaaaaaaga ] [-] EMBL CB666772 [ TCAACCTTGCAAAACCAGAAACTCGACCAGTTCAACTGGGTAATGATTTGGGCTTCTGCAATTCCAGTACACCATATGGTCCATATGTTGGAAGTAGATTTCTTCAGCAAGTGGCAGCAGGTCCTGTACCATTGGCTGTGTTCACCAAATCCTGATTTCAATGAAATCATGAACTGGTACAAGGGCTGGAAGGGCCTTTTCCCACCAGAATTGCTTGCCAATGAGCGCATACGGATGCTTTTAACGGCTGGCCTTGACATGATGAACCGAGCTGCTGAAGGCCTTGAGGTGGTGCAACCTGGCGCTAGGGAAAATGTGGGCTACTTGAGAGCAACAGAGAAGAGGCAATTTGATGCAGCACAGCAAGCATCACAATACATGACTCACCATGCGGTGCCAGGAGCAGCCATGGCGGATATGAGCTTTAAGGAGTCTATCCAGGCATATGCAATGGACCAAGGCTTATTGTTTATGCCCAGAGTTGGTAAATTCTACAATGGTATGCCAGTGTATGAGTTTGGCACCGTAAGTATTTGCATCGACTCTGTGAAGCGCCTACTCTACGCACAACTTCAAGAAGGAATTGAGAGATGGAGTGCTGTCTCTCTTACACAATTGATAGAAATGAACCGGAAGGCGAGGCAACGCTAGTTGATCATCCTATTGTGTACTATTACTAAAAGGTGTCAGTTTTGATCATCATTGTAGAATATTTCTAAAGAGCAGATGGTTTAATGATGTATCTGAACAGGTTGTTGTTTGGCCTAGTAACTTTGTAGTATTTATAAAAGGGCTTTAATATGCNCCGTG ] [-] EMBL CB668626 [ ACACCATATGGTCCATATGTTGGAAGTAGATTTCTTCAGCAAGTGGCAGCAGGTCCTGTACCATTGGCTGTGTTCACCAAATCCTGATTTCAATGAAATCATGAACTGGTACAAGGGCTGGAAGGGCCTTTTCCCACCAGAATTGCTTGCCAATGAGCGCATACGGATGCTTTTAACGGCTGGCCTTGACATGATGAACCGAGCTGCTGAAGGCCTTGAGGTGGTGCAACCTGGCGCTAGGGAAAATGTGGGCTACTTGAGAGCAACAGAGAAGAGGCAATTTGATGCAGCACAGCAAGCATCACAATACATGACTCACCATGCGGTGCCAGGAGCAGCCATGGCGGATATGAGCTTTAAGGAGTCTATCCAGGCATATGCAATGGACCAAGGCTTATTGTTTATGCCCAGAGTTGGTAAATTCTACAATGGTATGCCAGTGTATGAGTTTGGCACCGTAAGTATTTGCATCGACTCTGTGAAGCGCCTACTCTACGCACAACTTCAAGAAGGAATTGAGAGATGGAGTGCTGTCTCTCTTACACAATTGATAGAAATGAACCGGAAGGCGAGGCAACGCTAGTTGATCATCCTATTGTGTACTATTACTAAAAGGTGTCAGTTTTGATCATCATTGTAGAATATTTCTAAAGAGCAGATGGTTTAATGATGTATCTGAACAGGTTGTTGTTTGGCCTAGTAACTTTGTAGTATTTATATTCATGCTTTAATATGCACCGTGGTGCCTTTTTCTTGCCATAGAATGAACAAAAGGTTTATTAACTATTAGTTATCACCATGACAATT ] [-] EMBL CB682318 [ TATGTTGGAAGTAGATTTCTTCAGCAAGTGGCAGCAGGTCCTGTACCATTGGCTGTGTTCACCAAATCCTGATTTCAATGAAATCATGAACTGGTACAAGGGCTGGAAGGGCCTTTTCCCACCAGAATTGCTTGCCAATGAGCGCATACGGATGCTTTTAACGGCTGGCCTTGACATGATGAACCGAGCTGCTGAAGGCCTTGAGGTGGTGCAACCTGGCGCTAGGGAAAATGTGGGCTACTTGAGAGCAACAGAGAAGAGGCAATTTGATGCAGCACAGCAAGCATCACAATACATGACTCACCATGCGGTGCCAGGAGCAGCCATGGCGGATATGAGCTTTAAGGAGTCTATCCAGGCATATGCAATGGACCAAGGCTTATTGTTTATGCCCAGAGTTGGTAAATTCTACAATGGTATGCCAGTGTATGAGTTTGGCACCGTAAGTATTTGCATCGACTCTGTGAAGCGCCTACTCTACGCACAACTTCAAGAAGGAATTGAGAGATGGAGTGCTGTCTCTCTTACACAATTGATAGAAATGAACCGGAAGGCGAGGCAACGCTAGTTGATCATCCTATTGTGTACTATTACTAAAAGGTGTCAGTTTTGATCATCATTGTAGAATATTTCTAAAGAGCAGATGGTTTAATGATGTATCTGAACAGGTTGTTGTTTGGCCTAGTAACTTTGTAGTATTTATATTCATGCTTTAATATGCACCGTGGTGCCTTTTTCTTGCCATAGAAAGGGCAAATGATTTATTAACTATTAGTTATCACCAaaaaaaaag] [-] EMBL CB656510 [ ATGTTGGAAGTAGATTTCTTCAGCAAGTGGCAGCAGGTCCTGTACCATTGGCTGTGTTCACCAAATCCTGATTTCAATGAAATCATGAACTGGTACAAGGGCTGGAAGGGCCTTTTCCCACCAGAATTGCTTGCCAATGAGCGCATACGGATGCTTTTAACGGCTGGCCTTGACATGATGAACCGAGCTGCTGAAGGCCTTGAGGTGGTGCAACCTGGCGCTAGGGAAAATGTGGGCTACTTGAGAGCAACAGAGAAGAGGCAATTTGATGCAGCACAGCAAGCATCACAATACATGACTCACCATGCGGTGCCAGGAGCAGCCATGGCGGATATGAGCTTTAAGGAGTCTATCCAGGCATATGCAATGGACCAAGGCTTATTGTTTATGCCCAGAGTTGGTAAATTCTACAATGGTATGCCAGTGTATGAGTTTGGCACCGTAAGTATTTGCATCGACTCTGTGAAGCGCCTACTCTACGCACAACTTCAAGAAGGAATTGAGAGATGGAGTGCTGTCTCTCTTACACAATTGATAGAAATGAACCGGAAGGCGAGGCAACGCTAGTTGATCATCCTATTGTGTACTATTACTAAAAGGTGTCAGTTTTGATCATCATTGTAGAATATTTCTAAAGAGCAGATGGTTTAATGATGTATCTGAACAGGTTGTTGTTTGGCCTAGTAACTTTGTAGTATTTATATTCATGCTTTAATATGCACCGTGGTGCCTTTTGCTTGCCATAGAATGAACAAATGATTTATTGACTAaaaaga ] [-] EMBL CB661150 [ TGGCCTTGACATGATGAACCGAGCTGCTGAAGGCCTTGAGGTGGTGCAACCTGGCGCTAGGGAAAATGTGGGCTACTTGAGAGCAACAGAGAAGAGGCAATTTGATGCAGCACAGCAAGCATCACAATACATGACTCCCCATGCGGTGCCAGGAGCAGCCATGGCGGATATGAGCTTTAAGGAGTCTATCCAGGCATATGCAATGGACCAAGGCTTATTGTTTATGCCCAGAGTTGGTAAATTCTACAATGGTATGCCAGTGTATGAGTTTGGCCCCGTAAGTATTTGCATCGACTCTGTGAAGCGCCTACTTTACGCCCAACTTCAAGAAGGAATTGAGAGATGGAGTGCTGTCTCTCTTACACAATTGATAGAAATGAACCGGAAGGCGAGGCAACGCTAGTTGATCATCCTATTGTGTACTATTACTAAAAGGTGTCAGTTTTGATCATCATTGTAGAATATTTCTAAAGAGCAGATGGTTTAATGATGTATCTGAACAGGTTGTTGTAGGGCCTAGTAACTTTGTAGTATTTATATTCAGGCTTTAAAAGGCCCCGTGGTCCCTT ] [+] EMBL CB661149 [ GACATGATGAACCGAGCTGCTGAAGGCCTTGAGGTGGTGCAACCTGGCGCTAGGGAAAATGTGGGCTACTTGAGAGCAACAGAGAAGAGGCAATTTGATGCAGCACAGCAAGCATCACAATACATGACTCACCATGCGGTGCCAGGAGCAGCCATGGCGGATATGAGCTTTAAGGAGTCTATCCAGGCATATGCAATGGACCAAGGCTTATTGTTTATGCCCAGAGTTGGTAAATTCTACAATGGTATGCCAGTGTATGAGTTTGGCACCGTAAGTATTTGCATCGACTCTGTGAAGCGCCTACTCTACGCACAACTTCAAGAAGGAATTGAGAGATGGAGTGCTGTCTCTCTTACACAATTGATAGAAATGAACCGGAAGGCGAGGCAACGCTAGTTGATCATCCTATTGTGTACTATTACTAAAAGGTGTCAGTTTTGATCATCATTGTAGAATATTTCTAAAGAGCAGATGGTTTAATGATGTATCTGAACAGGTTGTTGTTTGGCCTAGTAACTTTGTAGTATTTATATTCATGCTTTAATATGCACCGTGGTGCCT ] consensusID : consensus_14659#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [TTATCGGCANAATTGGGATCCAAAGGGCTTTTGATTGTGTGTGTTATTGCACACAAGGATGTTTGGGTTAGTAAATGTCGTACNAAAACTGGTATTGCCAATGTGTATGGAGTGTGTGGGCACCCAGTGGAGTNATTGTCGCAATTGACTCTGGTGAAGCGCCTGACTGCTGATGGCACCATACTTGCAAGAAGGAATTGGAGAGATGGGAGTGCTGTTCTCTGCTGTGACCCAAATTGGATGAGAAATGCNCNCCCGGAAGGCGAGGCAACGCTAATAGATCATGCCTATTGGTGTGACCAAGTGATCTATAAAGGGTGTCCAGTTTTGATCATCATNGTAGAATCTTTCTCAAGACAGATGGTTTAATGATGTATCTGAACAGATTGTTGTTTGGCCTAGTAACTTCATAGCTATTTATATTCANGCTTTAATAAAAAAAAAA] [+] EMBL BM420362 [TTATCGGCANAATTGGGATCCAAAGGGCTTTTGATTGTGTGTGTTATTGCACACAAGGATGTTTGGGTTAGTAAATGTCGTACNAAAACTGGTATTGCCAATGTGTATGGAGTGTGTGGGCACCCAGTGGAGTNATTGTCGCAATTGACTCTGGTGAAGCGCCTGACTGCTGATGGCACCATACTTGCAAGAAGGAATTGGAGAGATGGGAGTGCTGTTCTCTGCTGTGACCCAAATTGGATGAGAAATGCNCNCCCGGAAGGCGAGGCAACGCTAATAGATCATGCCTATTGGTGTGACCAAGTGATCTATAAAGGGTGTCCAGTTTTGATCATCATNGTAGAATCTTTCTCAAGACAGATGGTTTAATGATGTATCTGAACAGATTGTTGTTTGGCCTAGTAACTTCATAGCTATTTATATTCANGCTTTAATAAAAAAAAAA] consensusID : consensus_14659#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [ATGGCACAGTGTTATGGATGTTTGTGGGCACACCGTGGAAGTGAATATTGGCCATTGGAATCTTTCTGTTGGAAGCGCCTACTCTTCTTANTGCACCAACCTTTCACAGAAAGGGAATTTGAGAGATTGGATGTGCCTGTTCTTCTCGTTACGACACANTTGATACGAAATTGAACCGGAACGGCGAGGCAACGCCGTAATAGAGTCATCCTTAGTTGTGTACCACAGTACTAAAAGGTGTCAGTTTTGATCATCATTGTAGAATCTTTCTCAAGAGCAGATGGTTTAATGATGTATCTGAACAGATTGTTGTTTGGCCTAGTAACTTCATAGTATTTATATTCATGCTTTAATATGCACTGTGGTGCCATTTTTCTTGCCAAAAAA] [+] EMBL BQ908826 [ATGGCACAGTGTTATGGATGTTTGTGGGCACACCGTGGAAGTGAATATTGGCCATTGGAATCTTTCTGTTGGAAGCGCCTACTCTTCTTANTGCACCAACCTTTCACAGAAAGGGAATTTGAGAGATTGGATGTGCCTGTTCTTCTCGTTACGACACANTTGATACGAAATTGAACCGGAACGGCGAGGCAACGCCGTAATAGAGTCATCCTTAGTTGTGTACCACAGTACTAAAAGGTGTCAGTTTTGATCATCATTGTAGAATCTTTCTCAAGAGCAGATGGTTTAATGATGTATCTGAACAGATTGTTGTTTGGCCTAGTAACTTCATAGTATTTATATTCATGCTTTAATATGCACTGTGGTGCCATTTTTCTTGCCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 AGGATGATGCGGCGGAGGAGGAGGAGGATCTCGACCTGCCCACGGCGTTCGGGCAGCGGA 60 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 TCGCGGAGGGCGCGAGGGCGAGGCGGGAGGAGAGGGCGCGGGAGCGGGAGACGGCCGCGC 120 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 GGCGCAGGCAGGCGTCGGGGGTGGCCTCCGGGAAGCCGGCGCCGGCTCTGGGGAGCCTGG 180 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 GGTCCAACACGAAGGTGGCCAAGATGATGGCCATGATGGGGTACAAGGATGGGATGGGGC 240 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 TCGGCAAGAACGAGCAAGGTATAGTCGCGCCGGTGGAGACCACTCTGCGCCCCAAGAACG 300 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 CCGGTCTCGGAAGCGTCGAGGGGTTCAAGGAGCCCAAGCCATTCTTTACTAAGGAGAATT 360 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 TGCCGCCTCCGCCTCCACCGGCGCCCGCCAAGAAGGAGCAGCAGAGGTGGTCGAAGAAGG 420 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 CCGGTGCGAAGAAAGGCCCCGTGCTGACGAAGAACGAGTTGCTGGCGATGCGCAGCGAGC 480 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 AGGAGCAGGACGAGCAGCCTACGGTTGTGCAGAAGGTGATCGACATGCGAGGGCCTCAGG 540 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 CACGCGTGCTAACGGACTTGAAGGGGCTCAACGTGGAGCAGGAGATGGAGGCGAACGATG 600 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 TGCCGATGCCAGAGTTGCAATACAATGTGAGGCTGCTTGTCGATGAGGCCAAGGCTGATA 660 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 TTGTGAGGCTGGATGGGCAGCTGCGACGGGAGCAGGAGAAGGTGGCAAGCTTAGTGCGGG 720 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 AGAAGGAGAAAGTGGCAAAACAGGAGGCTTTGCAGAAACGCCAACTACAAGTTATGGAGA 780 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 AGATTGCAGGAGTGCTGGAGCAGGTCCGAGTGGATGATACTGCAGGTATTCTCTCTCTGG 840 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 AAGGGTTGCTTAAGACCTTTCAGGAATTGAAGGCATGCTACGTGGAGGAATTCAAGATGT 900 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 GCAGTGTTGCATGGATTGCCTGCCGGTTTGCTCATCCGCTACTAATCCGAGTCTTCCAGG 960 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 GGTGGCAACCACTGCAAAATCCGTTGTTTGGCTTGGAGATCATGTCATCATGGAAAGATT 1020 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 TGCTGCAGGGGGATCAAGCATATGACTTCTCAGGTGATGTTGAATCGATGGCTCCATATG 1080 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 CACAATTGGTTTGCGAGGTCATCCTACCCGCTGTGAGGATATCAGGAACCAATTCATGGG 1140 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 AGGCTAGGGATCCAGAACCAATGCTTCGGTTTCTTGAATCATGGGAACGGTTGCTGCCCC 1200 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 CTATCGTGCTCCAGTCAATATTGGAGCATGTCATAATGCCAAAGCTTTCAGCTGCAGTAG 1260 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 ATTCTTGGGACCCACGCAGGGAGAAGGTACCAATCCATGTATGGGTGCATCCATGGTTGC 1320 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 CAATGCTAGGACAGAGGATAGATACCTTGTGCCATTCTATTCGATACAAACTGAGTAGTG 1380 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 TTCTCCATGTTTGGCAAGCTCACGATGCATCAGCCTATGCTGTGTTGTCTCCATGGAAGG 1440 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 ATGTATTTGATGCCGCAAGCTGGGAAGACTTGATTGTGCGTTATATCGTACCAAAATTGA 1500 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 AAATGGCACTTCAAGAATTTCAGATCAACCCTGCAAACCAGAAACTCGACCAGTTCAACT 1560 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 GGGTAATGATTTGGGCTTCTGCAATTCCAGTACACCATATGGTCCATATGTTGGAAGTAG 1620 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 ATTTCTTCAGCAAGTGGCAGCAGGTCCTGTACCATTGGCTGTGTTCACCAAATCCTGATT 1680 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 TCAATGAAATCATGAACTGGTACAAGGGCTGGAAGGGCCTTTTCCCACCAGAATTGCTTG 1740 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 CCAATGAGCGCATACGGATGCTTTTAACGGCTGGCCTTGACATGATGAACCGAGCTGCTG 1800 consensus_14659#1 ------------------------------------------------------------ consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 AAGGCCTTGAGGTGGTGCAACCTGGCGCTAGGGAAAATGTGGGCTACTTGAGAGCAACAG 1860 consensus_14659#1 --------------------------TTATCGGCANAATTGGGATCCAAAGGGCTTTTGA 34 consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 AGAAGAGGCAATTTGATGCAGCACAGCAAGCATCACAATACATGACTCACCATGCGGTGC 1920 consensus_14659#1 TTGTGTGTGTTATTGCACACAAGGATGTTTGGGTTAGTAAAT-GTCGTACNAAAACTGGT 93 consensus_14659#2 ------------------------------------------------------------ consensus_14659#0 CAGGAGCAGCCATGGCGGATATGAGCTTTAAGGAGTCTATCCAGGCATATGCAATGGACC 1980 consensus_14659#1 ATTGC-CAATGTGTATG---GA-GTGTGTGGGCAC-CCAGTGG-A-GTNATTGTCG-CAA 144 consensus_14659#2 ATGGCACAGTGT-TATG---GATGTTTGTGGGCAC-ACCGTGG-AAGTGAATATTGGCCA 54 consensus_14659#0 AAGGCTTATTGTTTATGCCCAGAGTTGGTAAATTCTACAATGGTATGCCAGTGTATGAGT 2040 * ** * *** **** ** ** * * *** * * * * * consensus_14659#1 TTGA-----CTCTGGTG-AAGCGCCTGA-CTGCTGATGGC--ACCATACTTGCA------ 189 consensus_14659#2 TTGGAATCTTTCTGTTGGAAGCGCCTACTCTTCTTANTGC--ACCAACCTTTCACA---G 109 consensus_14659#0 TTGGCAC--CGTAAGTATTTGCATCGACTCTGTGAAGCGCCTACTCTACGCACAACTTCA 2098 *** * ** * ** * ** ** * ** consensus_14659#1 AGAAGGAATTGGAGAGATGGGA-GTGC-TGTTCTCTGCTGTGACCCAAATTGGATGAGAA 247 consensus_14659#2 AAAGGGAATTTGAGAGATTGGATGTGCCTGTTCTTCTCGTTACGACACANTTGATACGAA 169 consensus_14659#0 AGAAGGAATT-GAGAGATGGAG------TGCTGTCTCTCTTA---CACAATTGATA-GAA 2147 * * ****** ******* * ** * * * ** * * *** *** consensus_14659#1 ATGCNCNCCCGGAAGGCGAGGCAACGC--TAATAGA-TCATGCCTATTGGTGTGACCAAG 304 consensus_14659#2 AT-TGAACCGGAACGGCGAGGCAACGCCGTAATAGAGTCATCCTTAGTTGTGTACCACAG 228 consensus_14659#0 AT--GAACC-GGAAGGCGAGGCAACGC--TAGTTGA-TCAT-CCTATT-GTGTACT--AT 2197 ** ** * * ************* ** * ** **** * ** * **** * consensus_14659#1 TGATCTATAAAGGGTGTCCAGTTTTGATCATCATNGTAGAATCTTTCTCAAGA-CAGATG 363 consensus_14659#2 TACT----AAAAGGTGTC-AGTTTTGATCATCATTGTAGAATCTTTCTCAAGAGCAGATG 283 consensus_14659#0 TACT----AAAAGGTGTC-AGTTTTGATCATCATTGTAGAATATTTCTAAAGAGCAGATG 2252 * * *** ****** *************** ******* ***** **** ****** consensus_14659#1 GTTTAATGATGTATCTGAACAGATTGTTGTTTGGCCTAGTAACTTCATAGCTATTTATAT 423 consensus_14659#2 GTTTAATGATGTATCTGAACAGATTGTTGTTTGGCCTAGTAACTTCATAG-TATTTATAT 342 consensus_14659#0 GTTTAATGATGTATCTGAACAGGTTGTTGTTTGGCCTAGTAACTTTGTAG-TATTTATAT 2311 ********************** ********************** *** ********* consensus_14659#1 TCANGCTTTAATAAAAAAAAAA-------------------------------------- 445 consensus_14659#2 TCATGCTTTAATATGCACTGTGGTGCCATTTTTCTTGCCAAAAAA--------------- 387 consensus_14659#0 TCATGCTTTAATATGCACCGTGGTGCC-TTTTTCTTGCCATAGAATGAACAAATGATTTA 2370 *** ********* * consensus_14659#1 ----------------------------- consensus_14659#2 ----------------------------- consensus_14659#0 TTAACTATTAGTTATCACCATGACAATTG 2399 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||