These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2022 fasta sequence [AAGTAAAGCTCCCAAAATCAAATTAAATTAAAGAGAAAAAAAAGAAGAAGAGAAGGGCAAATCGATTCGCCATGGCTGCTCCCCGCACGCCTCTCCCCCTCGTCCTCCTCCTCGTCTCCGCCGCGCTCCTCGCGGCGGCTCCCCTCTCGCCGGCGGCCGAGACCGGTGCCGCCGCGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTGGCGAGGGGATCCAATAGTGTGTCCTCCGCGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGGCAAGACATGGGACTCGCGCACCTACCAAAAAGAGAATCAAAGAGCTGGATAGACTGGCGGTTCGGTTGAAGGCTCTTATCGATGAAGCAAAACAAGGGCCTGAAAGTGACTCCCTGAAAAAAATTCCTTCATGGATGAAA-GGGTGGGAGTCACCCTGGAAAGGTAGGGTGAAAGGTGGTGAGCTGGTCAGTGAAGGGGAGGAAGAGCTATACAACCTTGCTATCAGAGTCAAGGAGAGGTTTCAAGGCCTATTTGATGAGGAATATCACCCTGATGTGTATTCAATAAGAGCAACTCAGGTTCCTCGGGCATCAGCTAGTGCAGTAGCATTTGGTTTGGGTCTACTTTCTGGGAAAGGGAAGCTTGGACCTGTGAAAAACCGTGCCTTTTCTGTTCTGAGTGAGAGTCGTGCAAGTGATATTTGTCTGCGATTCTTTGATAGCTGTGAAACATACAAGGACTACAGGAAAAGAAAGGAGCCTGATGTTGAAAAGCAAAAGGAACCAATTTTAGAACACGTCACATCGGCATTAGTTAACCGTTATCATCTCAATTTTACACCAAAAGATGTTTCTTCCCTCTGGTTCCTTTGCAAGCAGGAAGCATCTTTAATGAATATAACCAATCAAGCTTGTCAACTTTTTAATGAAGCTGAGGTTTATTTTCTAGAGTGGACAGATGATCTGGAGGGCTTTGTGCTAAAAGGTTATGGTGAGTCAATAAACTATCGGATGGGACTGCCATTGCTCAAGGACGTTGTCCAGTCAATGGAAGAAGCAATCGTTGCTAAAGAAGAAAACCACCCTGATGGTACATATGAGAAGGCAAGGCTCCGATTTGCACATGCTGAAACTGTTGTCCCTTTCTCATGTCTTCTTGGTCTTTTTCTTGAAGGATCAGATTTTGCGAAGATACAA-CGGGAGGAATCATTGGACATACCTCCTGTGCCACCACAGGGAAGAAATTGGAAGGGCAGTGTTGTTGCACCTTTTGCTGGTAACAATATGTTGGCTTTGTACCAGTGCCCAGGAAAAACTGATGGTGGTAAGATTTCTCGGGATCAGAAGAGCTCATACTTCGTGCAGGTTATACACAATGAAGCTCCAGTTTCAATGCCGGGATGCGGGAACAAAGATTTCTGCCCATTTGAAGAGTTCAAGGAGAAGATAGTTGAACCCCACCTGAAGCATGACTACGACGCCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTCCAGGATGTCCAATTTCTTCCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCAGGATGTGAAGTCGGAGCTGTAGGTTTATACTAGGCAGATGGTGCATCTTCTACCTTTCGCACTAAGCTGCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAACTACGGTGTTTCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACGCTATCACTGGTGCCCCTCTTCTTTCAG-ATAGAAGACGTTTGTTGATC-AATGTAATCTTTGTTTTAATCTGGACTTTCTCTAGTGCTCAACTGCTGACTCTGTTGAGATCAAACTGAAAGTACTAGCACACGGTTGTGATTGTGGCCCTTGTGGTAGGTTGAGATCATGTACTACTACTTGGACAATCCGTTTCAAGCTTTCAGCTCAATCAATCCAGATTTGGGAGATCCCCA] [+] EMBL AK121701 [AAGTAAAGCTCCCAAAATCAAATTAAATTAAAGAGAAAAAAAAGAAGAAGAGAAGGGCAAATCGATTCGCCATGGCTGCTCCCCGCACGCCTCTCCCCCTCGTCCTCCTCCTCGTCTCCGCCGCGCTCCTCGCGGCGGCTCCCCTCTCGCCGGCGGCCGAGACCGGTGCCGCCGCGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTGGCGAGGGGATCCAATAGTGTGTCCTCCGCGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGGCAAGACATGGGACTCGCGCACCTACCAAAAAGAGAATCAAAGAGCTGGATAGACTGGCGGTTCGGTTGAAGGCTCTTATCGATGAAGCAAAACAAGGGCCTGAAAGTGACTCCCTGAAAAAAATTCCTTCATGGATGAAA GGGTGGGAGTCACCCTGGAAAGGTAGGGTGAAAGGTGGTGAGCTGGTCAGTGAAGGGGAGGAAGAGCTATACAACCTTGCTATCAGAGTCAAGGAGAGGTTTCAAGGCCTATTTGATGAGGAATATCACCCTGATGTGTATTCAATAAGAGCAACTCAGGTTCCTCGGGCATCAGCTAGTGCAGTAGCATTTGGTTTGGGTCTACTTTCTGGGAAAGGGAAGCTTGGACCTGTGAAAAACCGTGCCTTTTCTGTTCTGAGTGAGAGTCGTGCAAGTGATATTTGTCTGCGATTCTTTGATAGCTGTGAAACATACAAGGACTACAGGAAAAGAAAGGAGCCTGATGTTGAAAAGCAAAAGGAACCAATTTTAGAACACGTCACATCGGCATTAGTTAACCGTTATCATCTCAATTTTACACCAAAAGATGTTTCTTCCCTCTGGTTCCTTTGCAAGCAGGAAGCATCTTTAATGAATATAACCAATCAAGCTTGTCAACTTTTTAATGAAGCTGAGGTTTATTTTCTAGAGTGGACAGATGATCTGGAGGGCTTTGTGCTAAAAGGTTATGGTGAGTCAATAAACTATCGGATGGGACTGCCATTGCTCAAGGACGTTGTCCAGTCAATGGAAGAAGCAATCGTTGCTAAAGAAGAAAACCACCCTGATGGTACATATGAGAAGGCAAGGCTCCGATTTGCACATGCTGAAACTGTTGTCCCTTTCTCATGTCTTCTTGGTCTTTTTCTTGAAGGATCAGATTTTGCGAAGATACAA CGGGAGGAATCATTGGACATACCTCCTGTGCCACCACAGGGAAGAAATTGGAAGGGCAGTGTTGTTGCACCTTTTGCTGGTAACAATATGTTGGCTTTGTACCAGTGCCCAGGAAAAACTGATGGTGGTAAGATTTCTCGGGATCAGAAGAGCTCATACTTCGTGCAGGTTATACACAATGAAGCTCCAGTTTCAATGCCGGGATGCGGGAACAAAGATTTCTGCCCATTTGAAGAGTTCAAGGAGAAGATAGTTGAACCCCACATGAAGCATGACTACGACGCCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTCCAGGATGTCCAATTTCTTCCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCAGGATGTGAAGTCGGAGCTGTAGGTTTATACTAGGCAGATGGTGCATCTTCTACCTTTCGCACTAAGCTGCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAACTACGGTGTTTCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACGCTATCACTGGTGCCCCTCTTCTTTCAG ATAGAAGACGTTTGTTGATC AATGTAATCTTTGTTTTAATCTGGACTTTCTCTAGTGCTCAACTGCTGACTCTGTTGAGATCAAACTGAAAGTACTAGCACACGGTTGTGATTGTGGCCCTTGTGGTAGGTTGAGATCATGTACTACTACTTGGACAATCCGTTTCAAGCTTTCAGCTCAATCAATCCAGATTTGGGAGATCCCCA] [+] EMBL OSS0760A [ AGCTCCCAAAATCAAATTAAATTAAAGAGAAAAAAAAGAAGAAGAGAAGGGCAAATCGATTCGCCATGGCTGCTCCCCGCACGCCTCTCCCCCTCGTCCTCCTCCTCGTCTCCGCCGCGCTCCTCGCGG GTCTCCCCTCTCGCCGGCGGCCGAGACCGGTGCCGCCGCGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTGGCGAGGGGATCCAATAGTGTGTCCTCCGCGCCGTCTATGTCGG ] [+] EMBL CB676462 [ AGAAGAGAAGGGCAAATCGATTCGCCATGGCTGCTCCCCGCACGCCTCTCCCCCTCGTCCTCCTCCTCGTCTCCGCCGCGCTCCTCGCGGCGGCTCCCCTCTCGCCGGCGGCCGAGACCGGTGCCGCCGCGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTGGCGAGGGGATCCAATAGTGTGTCCTCCGCGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGGCAAGACATGGGACTCGCGCACCTACCAAAAAGAGAATCAAAGAGCTGGATAGACTGGCGGTTCGGTTGAAGGCTCTTATCGATGAAGCAAAACAAGGGCCTGAAAGTGACTCCCTGAAAAAAATTCCTTCATGGATGAAA GGGTGGGAGTCACCCTGGAAAGGTAGGGTGAAAGGTGGTGAGCTGGTCAGTGAAGGGGAGGAAGAGCTATACAACCTTGCTATCAGAGTCAAGGAGAGGTTTCAAGGCCTATTTGATGAGGAATATCACCCTGATGTGTATTCAATAAGAGCAACTCAGGTTCCTCGGGCATCAGCTAGTGCAGTAGCATTTGGTTTGGGTCTACTTTCTGGGAAAGGGAAGCTTGGACCTGTGAAAAACCGTGCCTTTTCTGTTCTGAGTGAGAGTCGTGCAAGTGATATTTGTCTGCGATTCTTTGATAGCTGTGAAACATACAAGGACTACAGGAAAAGAAAGGAGCCTGATGTTGAAAA CAAAAGGAACCAATTTTAGAACACGTCACATCGGCATTAGTTAACC ] [+] EMBL CB636884 [ CTCCCCCTCGTCCTCCTCCTCGTCTCCGCCGCGCTCCTCGCGGCGGCTCCCCTCTCGCCGGCGGCCGAGACCGGTGCCGCCGCGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTGGCGAGGGGATCCAATAGTGTGTCCTCCGCGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGGCAAGACATGGGACTCGCGCACCTACCAAAAAGAGAATCAAAGAGCTGGATAGACTGGCGGTTCGGTTGAAGGCTCTTATCGATGAAGCAAAACAAGGGCCTGAAAGTGACTCCCTGAAAAAAATTCCTTCATGGATGAAAGGGGTGGGAGTCACCCTGGAAAGGTAGGGTGAAAGGTGGTGAGCTGGTCAGTGAAGGGGAGGAAGAGCTATACAACCTTGCTATCAGAGTCAAGGAGAGGTTTCAAGGCCTATTTGATGAGGAATATCACCCTGATGTGTATTCAATAAGAGCAACTCAGGTTCCTCGGGCATCAGC ] [+] EMBL CB638465 [ CTCCCCCTCGTCCTCCTCCTCGTCTCCGCCGCGCTCCTCGCGGCGGCTCCCCTCTCGCCGGCGGCCGAGACCGGTGCCGCCGCGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTGGCGAGGGGATCCAATAGTGTGTCCTCCGCGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGGCAAGACATGGGACTCGCGCACCTACCAAAAAGAGAATCAAAGAGCTGGATAGACTGGCGGTTCGGTTGAAGGCTCTTATCGATGAAGCAAAACAAGGGCCTGAAAGTGACTCCCTGAAAAAAATTCCTTCATGGATGAAA GGGTGGGAGTCACCCTGGAAAGGTAGGGTGAAAGGTGGTGAGCTGGTCAGTGAAGGGGAGGAAGAGCTATACAACCTTGCTATCAGAGTCAAGGAGAGGTTTCAAGGCCTATTTGATGAGGAATATCACCCTGATGTGTATTCAATAAGAACAACTCAGGTTCCTCGGGCATCAGCTAGTGCAATAGCATTTGGTTTGGGTCT ] [+] EMBL CF303355 [ TTGAAGGCTCTTATCGATGAAGCAAAACAAGGGCCTGAAAGTGACTCCCTGAAAAAAATTCCTTCATGGATGAAA GGGTGGGAGTCACCCTGGAAAGGTAGGGTGAAAGGTGGTGAGCTGGTCAGTGAAGGGGAGGAAGATCTATACAACCTTGCTATCAGAGTCAAGGAGAGGTTTCAAGGCCTATTTGATGAGGAATATCACCCTGATGTGTATTCAATAAGAGCAACTCAGGTTCCTCGGGCATCAGCTAGTGCAGTAGCATTTGGTTTGGGTCTACTTTCTGGGAAAGGGAAGCTTGGACCTGTGAAAAACCGTGCCTTTTCTGTTCTGAGTGAGAGTCGTGCAAGTGATATTTGTCTGCGATTCTTTGATAGCTGTGAAACATACAAGGACTACAGGAAAAGAAAGGAGCCTGATGTTGAAAAGCAAAAGGAACCAATTTTAGAACACGTCACATCGGCATTAGTTAACCGTTATCATCTCAATTTTACACCAAAAGATGTTTCTTCCCTCTGGTTCCTTTGCAAGCAGGAAGCATCTTTAATGAATATAACCAATCAAGCTTGTCAACTTTTTAA ] [+] EMBL AU181453 [ CTCGGGCATCAGCTAGTGCAGTAGCATTTGGTTTGGGTCTACTTTCTGGGAAAGGGAAGCTTGGACCTGTGAAAAACCGTGCCTTTTCTGTTCTGAGTGAGAGTCGTGCAAGTGATATTTGTCTGCGATTCTTTGATAGCTGTGAAACATACAAGGACTACAGGAAAAGAAAGGAGCCTGATGTTGAAAAGCAAAAGGAACCAATTTTAGAACACGTCACATCGGCATTAGTTAACCGTTATCATCTCAATTTTACACCAAAAGATGTTTCTTCCCTCTGGTTCCTTTGCAAGCAGGAAGCATCTTTAATGAATATAACCAATCAAGCTTGTCAACTTTTTAATGAAGCTGAGGTTTATTTTCTAGAGTGGACAGATGATCTGGAGGGCTTTGTGCTAAAAGGTTATGGTGAGTCAATAAACTATCG ] [-] EMBL CB676463 [ GAAGAAGCAATCGTTGCTAAAGAAGAAAACCACCCTGATGGTACATATGAGAAGGCAAGGCTCCGATTTGCACATGCTGAAACTGTTGTCCCTTTCTCATGTCTTCTTGGTCTTTTTCTTGAAGGATCAGATTTTGCGAAGATACAA CGGGAGGAATCATTGGACATACCTCCTGTGCCACCACAGGGAAGAAATTGGAAGGGCAGTGTTGTTGCACCTTTTGCTGGTAACAATATGTTGGCTTTGTACCAGTGCCCAGGAAAAACTGATGGTGGTAAGATTTCTCGGGATCAGAAGAGCTCATACTTCGTGCAGGTTATACACAATGAAGCTCCAGTTTCAATGCCGGGATGCGGGAACAAAGATTTCTGCCCATTTGAAGAGTTCAAGGAGAAGATAGTTGAACCCCACCTGAAGCATGACTACGACGCCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTCCAGGATGTCCAATTTCTTCCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCAGGATGTGAAGTCGGAGCTGTAGGTTTATACTAGGCAGATGGTGCATCTTCTACCTTTCGCACTAAGCTGCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAACTACGGTGTTTCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACGCTATCACTGGTGCCCCTCTTCTTTCAG ATAGAAGACGTTTGTTGATC AATGTAATCTTTGTT ] [+] EMBL AU068139 [ CTTCTTGGTCTTTTTCTTGAAGGATCAGATTTTGCGAAGATACAACCGGGAGGAATCATTGGACATACCTCCTGTGCCACCACAGGGAAGAAATTGGAAGGGCAGTGTTGTTGCACCTTTTGCTGGTAACAATATGTTGGCTTTGTACCAGTGCCCAGGAAAAACTGATGGTGGTAAGATTTCTCGGGATCAGAAGAGCTCATA TTCGTGCAGGTTATACACAATGAAGCTCCAGTTTCAATGCCGGGATGCGGGAACAAAGATTTCTGCCCATTTGAAGAGTTCAAGGAGAAGATAGTTGAACCCCACCTGAAGCATGACTACGACGCCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTCCAGGATGTCCAATTTCTTCCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCAGGATGTGAAGTCGGAGCTGTAGGTTTATACTAGGCAGATGGTGCATCTTCTACCTTTCGCACTAAGCTGCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAACTACGGTGTTTCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACGCTATCACTGGTGCCCCTCTTCTTTCAG ATAGAAGACGTTTGTTGATC AATGTAATCTTTGTTTTAATCaaaaaaa ] [-] EMBL CB636885 [ AAAAACTGATGGTGGTAAGATTTCTCGGGATCAGAAGAGCTCATACTTCGTGCAGGTTATACACAATGAAGCTCCAGTTTCAATGCCGGGATGCGGGAACAAAGATTTCTGCCCATTTGAAGAGTTCAAGGAGAAGATAGTTGAACCCCACCTGAAGCATGACTACGACGCCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTCCAGGATGTCCAATTTCTTCCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCAGGATGTGAAGTCGGAGCTGTAGGTTTATACTAGGCAGATGGTGCATCTTCTACCTTTCGCACTAAGCTGCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAACTACGGTGTTTCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACGCTATCACTGGTGCCCCTCTTTTTTCAGAATAGAAGACGTTTGTTGATCAAATGTAATCTTT ] consensusID : consensus_14661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1521 fasta sequence [AAAAAAGAAGAAGAGAAGGGCAAATCGATTCGCCATGGCTGCTCCCCGCACGCCTCTCCCCCTCGTCCTCCTCCTCGTCTCCGCCGCGCTCCTCGCGGCGGCTCCCCTCTCGCCGGCGGCCGAGACCGGTGCCGCCGCGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTGGCGAGGGGATCCAATAGTGTGTCCTCCGCGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGGCAAGACATGGGACTCGCGCACCTACCAAAAAGAGAATCAAAGAGCTGGATAGACTGGCGGTTCGGTTGAAGGCTCTTATCGATGAAGCAAAACAAGGGCCTGAAAGTGACTCCCTGAAAAAAAATTCCTTCATGGATGAAAGGGTGGGAGTCACCCTGGAAAGGTAGGGTGAAAGGTGGTGAGCTGGTCAGTGAAGGGGAGGAAGAGCTATACAACCTTGCTATCAGAGTCAAGGAGAGGTTTCAAGGCCTATTTGATGAGGAATATCACCCTGATGTGTATTCAATAAGAGCAACTCAGGTTCCTCGGGCATCAGCTAGTGCAGTAGCATTTGGTTTGGGTCTACTTTCTGGGAAAGGGAAGCTTGGACCTGTGAAAAACCGTGCCTTTTCTGTTCTGAGTGAGAGTCGTGCAAGTGATATTTGTCTGCGATTCTTTGATAGCTGTGAAACATACAAGGAAAAGAAAGGAGCCTGATGTTGAAAAGCAAAAGGAACCAATTTTAGAACACGTCACATCGGCATTAGTTAACCGTTATCATCTCAATTTTACACCAAAAGATGTTTCTTCCCTCTGGTTCCTTTGCAAGCAGAAGAGCTCATACTTCGTGCAGGTTATACACAATGAAGCTCCAGTTTCAATGCCGGGATGCGGGAACAAAGATTTCTGCCCATTTGAAGAGTTCAAGGAGAAGATAGTTGAACCCCACCTGAAGCATGACTACGACGCCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTCCAGGATGTCCAATTTCTTCCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCAGGATGTGAAGTCGGAGCTGTAGGTTTATACTAGGCAGATGGTGCATCTTCTACCTTTCGCACTAAGCTGCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAACTACGGTGTTTCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACGCTATCACTGGTGCCCCTCTTCTTTCAG-ATAGAAGACGTTTGTTGATCAATGTAATCTTTGTTTTAATCTGGACTTTCTCTAGTGCTCAACTGCTGACTCTGTTGAGATCAAACTGAAAGTACTAGCACACGGTTGTGATTGTGGCCCTTGTGGTAGGTTGAGATCATGTACTACTACTTGGACAATCCGTTTCAAGCTTTCACTCAATCAATCCAGATTTGGGAGATCCCCAATTCGAGAT] [+] EMBL AK064366 [AAAAAAGAAGAAGAGAAGGGCAAATCGATTCGCCATGGCTGCTCCCCGCACGCCTCTCCCCCTCGTCCTCCTCCTCGTCTCCGCCGCGCTCCTCGCGGCGGCTCCCCTCTCGCCGGCGGCCGAGACCGGTGCCGCCGCGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTGGCGAGGGGATCCAATAGTGTGTCCTCCGCGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGGCAAGACATGGGACTCGCGCACCTACCAAAAAGAGAATCAAAGAGCTGGATAGACTGGCGGTTCGGTTGAAGGCTCTTATCGATGAAGCAAAACAAGGGCCTGAAAGTGACTCCCTGAAAAAAAATTCCTTCATGGATGAAAGGGTGGGAGTCACCCTGGAAAGGTAGGGTGAAAGGTGGTGAGCTGGTCAGTGAAGGGGAGGAAGAGCTATACAACCTTGCTATCAGAGTCAAGGAGAGGTTTCAAGGCCTATTTGATGAGGAATATCACCCTGATGTGTATTCAATAAGAGCAACTCAGGTTCCTCGGGCATCAGCTAGTGCAGTAGCATTTGGTTTGGGTCTACTTTCTGGGAAAGGGAAGCTTGGACCTGTGAAAAACCGTGCCTTTTCTGTTCTGAGTGAGAGTCGTGCAAGTGATATTTGTCTGCGATTCTTTGATAGCTGTGAAACATACAAGGAAAAGAAAGGAGCCTGATGTTGAAAAGCAAAAGGAACCAATTTTAGAACACGTCACATCGGCATTAGTTAACCGTTATCATCTCAATTTTACACCAAAAGATGTTTCTTCCCTCTGGTTCCTTTGCAAGCAGAAGAGCTCATACTTCGTGCAGGTTATACACAATGAAGCTCCAGTTTCAATGCCGGGATGCGGGAACAAAGATTTCTGCCCATTTGAAGAGTTCAAGGAGAAGATAGTTGAACCCCACCTGAAGCATGACTACGACGCCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTCCAGGATGTCCAATTTCTTCCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCAGGATGTGAAGTCGGAGCTGTAGGTTTATACTAGGCAGATGGTGCATCTTCTACCTTTCGCACTAAGCTGCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAACTACGGTGTTTCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACGCTATCACTGGTGCCCCTCTTCTTTCAG ATAGAAGACGTTTGTTGATCAATGTAATCTTTGTTTTAATCTGGACTTTCTCTAGTGCTCAACTGCTGACTCTGTTGAGATCAAACTGAAAGTACTAGCACACGGTTGTGATTGTGGCCCTTGTGGTAGGTTGAGATCATGTACTACTACTTGGACAATCCGTTTCAAGCTTTCACTCAATCAATCCAGATTTGGGAGATCCCCAATTCGAGAT] [+] EMBL C26121 [ GGCAAATCGATTCGCCATGGCTGCTCCCCGCACGNCTCTCCCCCTCGTCCTCCTCCTCGTCTCCGCCGCGCTCCTCGCGG GGCTCCCCTCTCGCCGGCGGCCGAGACCGGTGCCGCCGCGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTGGCGAGGGGATCCAATAGTGTGTCCTCCGCGCCGTCTATGTCGGATGANTGCCGCGTGATCCACCTCAATCTCGTGGCAAGACATGGGACTCGCGCACCTACCAAAAAGAGAATNAAAGAGCTGGATAGACTGGCGGTTC ] [+] EMBL D43143 [ TGGCTGCTCCCCGCACG CTCTCCCCCTCGTCCTCCTCCTCGTCTCCGCCGCGATCCTC ] [+] EMBL AU100661 [ AGCTCCAGTTTCAATGCCGGGATGCGGGAACAAAGATTTCTGCCCATTTGAAGAGTTCAAGGAGAAGATAGTTGAACCCCACCTGAAGCATGACTACGACGCCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTCCAGGATGTCCAATTTCTTCCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCAGGATGTGAAGTCGGAGCTGTAGGTTTATACTAGGCAGATGGTGCATCTTCTACCTTTCGCACTAAGCTGCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAACTACGGTGTTTCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACGCTATCACTGGTGCCCCTCTTNTTTCAG ATAGAAGACGTTTGTTGATCAATGTAATCTTTGTTTTAATC ] [-] EMBL CB638466 [ CAGTTTCAATGCCGGGATGCGGGAACAAAGATTTCTGCCCATTTGAAGAGTTCAAGGAGAAGATAGTTGAACCCCACCTGAAGCATGACTACGACGCCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTCCAGGATGTCCAATTTCTTCCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCAGGATGTGAAGTCGGAGCTGTAGGTTTATACTAGGCAGATGGTGCATCTTCTACCTTTCGCACTAAGCTGCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAACTACGGTGTTTCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACGCTATCACTGGTGCCCCTCTTCTTTCAGAATAGAAGACGTTTG ] consensusID : consensus_14661#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [CTTACCCATGGGATTAACCAAGGGGACTGACTCGTGGACTAAAACTACGGNTGTTTCTGTACTTTGGCAACCCCTCAGTTTGGATGAGCGAGTCCCAATGTGTAAACAACACGGCTAACAACTGGGTGCCCCCTCCTTTCTTTCNAGATAGAAGACGTTTGTTTGATNAATGTAATCTTTTGTTTTAAATCTGGGANTTTNTCTAGGTGCTCNAACTGCTGACTCTGTTGAGATCAAACTGAAAGTACTAGCAACACGGGTTTNTTGATTTGTGGCNCCTTGTGGGTAGGNTTGAGGATNATGTACTNACTACTTGGGACAATCCCGTTTTCAAGTTCAGGTTCAANTCAATCCAGATTTGGGANATCCCCAATTCGAGATGAATCATGACAAAAAAAA] [+] EMBL AU033001 [CTTACCCATGGGATTAACCAAGGGGACTGACTCGTGGACTAAAACTACGGNTGTTTCTGTACTTTGGCAACCCCTCAGTTTGGATGAGCGAGTCCCAATGTGTAAACAACACGGCTAACAACTGGGTGCCCCCTCCTTTCTTTCNAGATAGAAGACGTTTGTTTGATNAATGTAATCTTTTGTTTTAAATCTGGGANTTTNTCTAGGTGCTCNAACTGCTGACTCTGTTGAGATCAAACTGAAAGTACTAGCAACACGGGTTTNTTGATTTGTGGCNCCTTGTGGGTAGGNTTGAGGATNATGTACTNACTACTTGGGACAATCCCGTTTTCAAGTTCAGGTTCAANTCAATCCAGATTTGGGANATCCCCAATTCGAGATGAATCATGACAAAAAAAA] consensusID : consensus_14661#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [AAATCGATTCNCCATGGCTGCTCCCCNCACNNCTCTCCCCCTCGNCCTCCTCCTCGTCTCCNCCGCGCTCCTCGCNGTNCCCCCTCTCGCCNGCNNCGAGACCGGTNCCNCCGCGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTNGCGAGGGGATCCAATAGTGTGTCCTCCNGGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGGCAAGACATNGGA] [+] EMBL AU068138 [AAATCGATTCNCCATGGCTGCTCCCCNCACNNCTCTCCCCCTCGNCCTCCTCCTCGTCTCCNCCGCGCTCCTCGCNGTNCCCCCTCTCGCCNGCNNCGAGACCGGTNCCNCCGCGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTNGCGAGGGGATCCAATAGTGTGTCCTCCNGGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGGCAAGACATNGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14661#0 ------------------------------------------------------------ consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ------------------------------------------------------------ consensus_14661#2 CTTACCCATGGGATTAACCAAGGGGACTGACTCGTGGACTAAAACTACGGNTGTTTCTGT 60 consensus_14661#0 -AAGTAAAGCTCCCAAAATCAAATTAAATTAAAGAGAAAAAAAAGAAGAAGAGAAGGGCA 59 consensus_14661#3 -----------------------------------------------------------A 1 consensus_14661#1 --------------------------------------AAAAAAGAAGAAGAGAAGGGCA 22 consensus_14661#2 ACTTTGGCAACCCCTCAGTTTGGATGAGCGAGTCCCAATGTGTAAACAACACGGCTAACA 120 * consensus_14661#0 AATCGATTCGCCATGGCTGCTCCCCGCACGCCTCTCCCCCTCGTCCTCCTCCTCGTCTCC 119 consensus_14661#3 AATCGATTCNCCATGGCTGCTCCCCNCACNNCTCTCCCCCTCGNCCTCCTCCTCGTCTCC 61 consensus_14661#1 AATCGATTCGCCATGGCTGCTCCCCGCACGCCTCTCCCCCTCGTCCTCCTCCTCGTCTCC 82 consensus_14661#2 ACTGGGTGCCCCCTCCTTTCTTTCNAGATAGAAGACGTTTGTTTGATNAATGTAATCTTT 180 * * * * * ** * * ** * * * * * *** consensus_14661#0 -GCCGCGCTCCTCGCGGCGGCTCCCCTCTCGCCGGCGGCCGAGACCGGTGCCGCCGCGTT 178 consensus_14661#3 -NCCGCGCTCCTCGCNGTN--CCCCCTCTCGCCNGCNNC-GAGACCGGTNCCNCCGCGTT 117 consensus_14661#1 -GCCGCGCTCCTCGCGGCGGCTCCCCTCTCGCCGGCGGCCGAGACCGGTGCCGCCGCGTT 141 consensus_14661#2 TGTTTTAAATCTGGGANTTTNTCTAGGTGCTCNAACTGCTGACTCTGTTGAGATCAAACT 240 ** * * * * * * ** * * * * * consensus_14661#0 CGACGT-CCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTGGCGAGGGGATCCAATA 237 consensus_14661#3 CGACGT-CCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTNGCGAGGGGATCCAATA 176 consensus_14661#1 CGACGT-CCGCCGCCACCTCTCCACCGTCACCAGGTACGATGTGGCGAGGGGATCCAATA 200 consensus_14661#2 GAAAGTACTAGCAACACGGGTTTNTTGATTTGTGGCNCCTTGTGGGTAGGNTTGAGGATN 300 * ** * * *** * * ** * *** * *** ** consensus_14661#0 GTGTGTCCTCCGCGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGG 297 consensus_14661#3 GTGTGTCCTCCNGGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGG 236 consensus_14661#1 GTGTGTCCTCCGCGCCGTCTATGTCGGATGAGTGCCGCGTGATCCACCTCAATCTCGTGG 260 consensus_14661#2 ATGTACTNACTACTTGGGACAATCCCGTTTTCAAGTTCA-GGTTCAANTCAATCCAGATT 359 *** * * * * * * * * * ** ****** * consensus_14661#0 CAAGACATGGGACTCGCGCACCTACCAAAAAGAGAATCAAAGAGCTGGATAGACTGGCGG 357 consensus_14661#3 CAAGACATNGGA------------------------------------------------ 248 consensus_14661#1 CAAGACATGGGACTCGCGCACCTACCAAAAAGAGAATCAAAGAGCTGGATAGACTGGCGG 320 consensus_14661#2 TGGGANATCCCCAATTCGAGATGAATCATGACAAAAAAAA-------------------- 399 ** ** consensus_14661#0 TTCGGTTGAAGGCTCTTATCGATGAAGCAAAACAAGGGCCTGAAAGTGACTCCCTGAAAA 417 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 TTCGGTTGAAGGCTCTTATCGATGAAGCAAAACAAGGGCCTGAAAGTGACTCCCTGAAAA 380 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 AAATTCCTTCATGGATGAAAGGGTGGGAGTCACCCTGGAAAGGTAGGGTGAAAGGTGGTG 477 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 AAAATTCCTTCATGGATGAAAGGGTGGGAGTCACCCTGGAAAGGTAGGGTGAAAGGTGGT 440 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 AGCTGGTCAGTGAAGGGGAGGAAGAGCTATACAACCTTGCTATCAGAGTCAAGGAGAGGT 537 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 GAGCTGGTCAGTGAAGGGGAGGAAGAGCTATACAACCTTGCTATCAGAGTCAAGGAGAGG 500 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 TTCAAGGCCTATTTGATGAGGAATATCACCCTGATGTGTATTCAATAAGAGCAACTCAGG 597 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 TTTCAAGGCCTATTTGATGAGGAATATCACCCTGATGTGTATTCAATAAGAGCAACTCAG 560 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 TTCCTCGGGCATCAGCTAGTGCAGTAGCATTTGGTTTGGGTCTACTTTCTGGGAAAGGGA 657 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 GTTCCTCGGGCATCAGCTAGTGCAGTAGCATTTGGTTTGGGTCTACTTTCTGGGAAAGGG 620 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 AGCTTGGACCTGTGAAAAACCGTGCCTTTTCTGTTCTGAGTGAGAGTCGTGCAAGTGATA 717 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 AAGCTTGGACCTGTGAAAAACCGTGCCTTTTCTGTTCTGAGTGAGAGTCGTGCAAGTGAT 680 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 TTTGTCTGCGATTCTTTGATAGCTGTGAAACATACAAGGACTACAGGAAAAGAAAGGAGC 777 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ATTTGTCTGCGATTCTTTGATAGCTGTGAAACATACAAGGAAAAGAAAGGAGCCTGATGT 740 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 CTGATGTTGAAAAGCAAAAGGAACCAATTTTAGAACACGTCACATCGGCATTAGTTAACC 837 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 TGAAAAGCAAAAGGAACCAATTTTAGAACACGTCACATCGGCATTAGTTAACCGTTATCA 800 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 GTTATCATCTCAATTTTACACCAAAAGATGTTTCTTCCCTCTGGTTCCTTTGCAAGCAGG 897 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 TCTCAATTTTACACCAAAAGATGTTTCTTCCCTCTGGTTCCTTTGCAAGCAGAAGAGCTC 860 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 AAGCATCTTTAATGAATATAACCAATCAAGCTTGTCAACTTTTTAATGAAGCTGAGGTTT 957 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ATACTTCGTGCAGGTTATACACAATGAAGCTCCAGTTTCAATGCCGGGATGCGGGAACAA 920 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 ATTTTCTAGAGTGGACAGATGATCTGGAGGGCTTTGTGCTAAAAGGTTATGGTGAGTCAA 1017 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 AGATTTCTGCCCATTTGAAGAGTTCAAGGAGAAGATAGTTGAACCCCACCTGAAGCATGA 980 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 TAAACTATCGGATGGGACTGCCATTGCTCAAGGACGTTGTCCAGTCAATGGAAGAAGCAA 1077 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 CTACGACGCCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTC 1040 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 TCGTTGCTAAAGAAGAAAACCACCCTGATGGTACATATGAGAAGGCAAGGCTCCGATTTG 1137 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 CAGGATGTCCAATTTCTTCCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCA 1100 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 CACATGCTGAAACTGTTGTCCCTTTCTCATGTCTTCTTGGTCTTTTTCTTGAAGGATCAG 1197 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 GGATGTGAAGTCGGAGCTGTAGGTTTATACTAGGCAGATGGTGCATCTTCTACCTTTCGC 1160 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 ATTTTGCGAAGATACAACGGGAGGAATCATTGGACATACCTCCTGTGCCACCACAGGGAA 1257 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ACTAAGCTGCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAACT 1220 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 GAAATTGGAAGGGCAGTGTTGTTGCACCTTTTGCTGGTAACAATATGTTGGCTTTGTACC 1317 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ACGGTGTTTCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACG 1280 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 AGTGCCCAGGAAAAACTGATGGTGGTAAGATTTCTCGGGATCAGAAGAGCTCATACTTCG 1377 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 CTATCACTGGTGCCCCTCTTCTTTCAGATAGAAGACGTTTGTTGATCAATGTAATCTTTG 1340 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 TGCAGGTTATACACAATGAAGCTCCAGTTTCAATGCCGGGATGCGGGAACAAAGATTTCT 1437 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 TTTTAATCTGGACTTTCTCTAGTGCTCAACTGCTGACTCTGTTGAGATCAAACTGAAAGT 1400 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 GCCCATTTGAAGAGTTCAAGGAGAAGATAGTTGAACCCCACCTGAAGCATGACTACGACG 1497 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ACTAGCACACGGTTGTGATTGTGGCCCTTGTGGTAGGTTGAGATCATGTACTACTACTTG 1460 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 CCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTCCAGGATGT 1557 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 GACAATCCGTTTCAAGCTTTCACTCAATCAATCCAGATTTGGGAGATCCCCAATTCGAGA 1520 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 CCAATTTCTTCCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCAGGATGTGA 1617 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 T----------------------------------------------------------- 1521 consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 AGTCGGAGCTGTAGGTTTATACTAGGCAGATGGTGCATCTTCTACCTTTCGCACTAAGCT 1677 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ------------------------------------------------------------ consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 GCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAACTACGGTGTT 1737 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ------------------------------------------------------------ consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 TCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACGCTATCACT 1797 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ------------------------------------------------------------ consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 GGTGCCCCTCTTCTTTCAGATAGAAGACGTTTGTTGATCAATGTAATCTTTGTTTTAATC 1857 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ------------------------------------------------------------ consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 TGGACTTTCTCTAGTGCTCAACTGCTGACTCTGTTGAGATCAAACTGAAAGTACTAGCAC 1917 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ------------------------------------------------------------ consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 ACGGTTGTGATTGTGGCCCTTGTGGTAGGTTGAGATCATGTACTACTACTTGGACAATCC 1977 consensus_14661#3 ------------------------------------------------------------ consensus_14661#1 ------------------------------------------------------------ consensus_14661#2 ------------------------------------------------------------ consensus_14661#0 GTTTCAAGCTTTCAGCTCAATCAATCCAGATTTGGGAGATCCCCA 2022 consensus_14661#3 --------------------------------------------- consensus_14661#1 --------------------------------------------- consensus_14661#2 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||