These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1042 fasta sequence [TTCNAGCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTACGTGCGTGAGAGAGCTAAGCATAGAGCTAGTGGAGTGGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG-GAACCTCAACCACTTCATCAATGGCCAGACCAACTACCCAGGCGTGGCGGGCAACGGCGCGACGTTCTACTTCCT-GGTGTTCGCCATCCTGGCCGGGGTGGTGGGCGCGGCGTCCAAGCTGGCGGGCGTCCACCACGTGCGCGCGTGGCGCCACGACAGCCTCGCCACCAACGCGGCCTCCTCCCTCATCGCGTGGGCCATCACCGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCCACCGCGGGTGGCGCCTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCAGCTGCTCTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCTACCGGGACC-ACGACTACGGCGTTGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTCCCCGACACGGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTGTGTATGTGACCGTACCTAGTACGTACTTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGTGCCGTCCTCAATTAATTACTCAAAGTCACCGAAAAAAAAAAAAAAAAA] [+] EMBL OSC753 [TTCNAGCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTACNTGCGTGAGAGAGCTAAGCATAGAGCTAGTGGAGTNGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAG TATCAGGGTAGCAGCCATNGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTCANCCACTTCATCAATGGCCAGACCAACT ] [+] EMBL OSC707 [TTCTAGCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTACGTGCGTGAGAGAGCTAAGCATAGAGCTAGTGGAGTGGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAG TATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTCAACCACTTCATCAATGGCCAGACCAACTACCCAGGCGTGGCGGGCAACGGCGCGACGTTCTACTTTCTGGGTGTTCG CATNCTGGCCGGGGTGGTGGGCGCGGCGTCCAAG TTGCGG ] [+] EMBL C28696 [ AGCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTACGTNCGTAANAAAGCTAAGCATAGAGCTAGTGGAGTGGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTCAACCACTTCATCAATGGNCA ] [+] EMBL AU063363 [ AGCTAGTGTTGCCCACCTTGATTTGCTCNNACTNTGATTCTTTCTGNCTCTGCGNACGTGCGTGAGAGAGCTAAGCATAGAGCTANTGGAGTGGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTNTTCTGCGTCGNCGTCGTCGTCCANCGGTGAGCTATCAGGGTAGCAGCCATNGCCGGAGTCGNGAGGAACATGCTGGCGACGCTCTTGGTGCTCAACCTCATCATGTACCTCATCNTCATCGGCTTCGCGAGCTGNGAACCTCAACCACTTCATCAATGGCCANACCAACTACCC ] [+] EMBL C97717 [ GCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTACGTGCGTNANAAAGCTAAGCATAGAGCTAGTGGAGTGGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTNAACCANTTCATCAATGGCCAGACCAACTACCCAG ] [+] EMBL U57639 [ ATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTCAACCACTTCATCAATGGCCAGACCAACTACCCAGGCGTGGCGGGCAACGGCGCGACGTTCTACTTCCT GGTGTTCGCCATCCTGGCCGGGGTGGTGGGCGCGGCGTCCAAGCTGGCGGGCGTCCACCACGTGCGCGCGTGGCGCCACGACAGCCTCGCCACCAACGCGGCCTCCTCCCTCATCGCGTGGGCCATCACCGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCCACCGCGGGTGGCGCCTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCAGCTGCTCTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCTACCGGGACC ACGACTACGGCGTTGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTCCCCGACACGGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTGTGTATGTGACCGTACCTAGTACGTACTTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGTGCCGTCCTCAATTAATTACTCCTTGTCACCGAAAAAAAAAAAAAAAAA] [+] EMBL AK063592 [ TCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTCAACCACTTCATCAATGGCCAGACCAACTACCCAGGCGTGGCGGGCAACGGCGCGACGTTCTACTTCCT GGTGTTCGCCATCCTGGCCGGGGTGGTGGGCGCGGCGTCCAAGCTGGCGGGCGTCCACCACGTGCGCGCGTGGCGCCACGACAGCCTCGCCACCAACGCGGCCTCCTCCCTCATCGCGTGGGCCATCACCGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCCACCGCGGGTGGCGCCTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCAGCTGCTCTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCTACCGGGACC ACGACTACGGCGTTGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTCCCCGACACGGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTGTGTATGTGACCGTACCTAGTACGTACTTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGTGCCGTCCTCAATTAATTACTC ] [+] EMBL AU181869 [ ACGCAGCTGCTCTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCTACCGGGACC ACGACTACGGCGTTGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTCCCCGACACGGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTGTGTATGTGACCGTACCTAGTACGTACTTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGTGCCGTCCTCAATTAAaaaaaaaaa ] [+] EMBL AU100990 [ ACCGGGACCAACGNCTACGGCGTTGGCGCCGGTGCTGCCGCCGGCNAGCCCAAGGGAACAGCGAGGGTCTGATCGATGATCTCCCCGACACGGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTGTGTATGTGACCGTACCTAGTACGTACTTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGTGCCGTCCTCAATTAAaaaaaaaaa ] consensusID : consensus_14675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1025 fasta sequence [ACAGTAGCTCTCAGCTAGCTAGCTAAACCAGTGCTAATTGTGTTGCTAATTTGTGTTGATTTGTGATTTTGATACGAGATGGCCGGAGTAGGGAGGACGATGATCGCGCCGCTGCTGGTGCTGAATCTGATCATGTACTTGATCGTGATCGGGTTCGCGAGCTGGAATCTCAACCACTACATCAACGGCGAGACCAACCACCCGGGGGTCGCCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTCGCGGGGGTGGTCGGCGCCGCCTCCAAGCTCGCCGGCGTCCACCACGTCCGCTCCTGGGGCGCGCACAGCCTCGCCGCCGGCGCCGCGTCGGCGCTCATCGCCTGGGCCATCACCGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCTACCGCGGGTGGCGCCTCCGCGTGCTCGAGGCCTTCGTCATCATCCTCGCCTTCACGCAGCTGCTCTACGTCGCCATGCTCCACGGCGGCCTCTTCTCCGGCAACCACGCCGCCGGCGCCGGCGGCTACGGCGGCGACTACCCCGCCGACCACCACCACAAGCCCGCCGCCGCGGCCAGGGTCTAACTGAATTTGACCCCGACACACCGGCCAATCGATCGATGCCATCCATCATGCACACGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTTCTCGTAATTTCTTCACTTTGTGTTTCCCGCTCGTGCATTGCTGCTAGATGCAATGGCAATGCACGAACAACGCTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTGTATCGACGTTCGTAATCATATGTATGTACCGTTTGGTTAAAAAAAAGTTCAAATGTTTGCTGCTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTACCAAACAAAGGGGAAATTTCGGGCCCTAAAAA] [+] EMBL AK102039 [ACAGTAGCTCTCAGCTAGCTAGCTAAACCAGTGCTAATTGTGTTGCTAATTTGTGTTGATTTGTGATTTTGATACGAGATGGCCGGAGTAGGGAGGACGATGATCGCGCCGCTGCTGGTGCTGAATCTGATCATGTACTTGATCGTGATCGGGTTCGCGAGCTGGAATCTCAACCACTACATCAACGGCGAGACCAACCACCCGGGGGTCGCCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTCGCGGGGGTGGTCGGCGCCGCCTCCAAGCTCGCCGGCGTCCACCACGTCCGCTCCTGGGGCGCGCACAGCCTCGCCGCCGGCGCCGCGTCGGCGCTCATCGCCTGGGCCATCACCGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCTACCGCGGGTGGCGCCTCCGCGTGCTCGAGGCCTTCGTCATCATCCTCGCCTTCACGCAGCTGCTCTACGTCGCCATGCTCCACGGCGGCCTCTTCTCCGGCAACCACGCCGCCGGCGCCGGCGGCTACGGCGGCGACTACCCCGCCGACCACCACCACAAGCCCGCCGCCGCGGCCAGGGTCTAACTGAATTTGACCCCGACACACCGGCCAATCGATCGATGCCATCCATCATGCACACGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTTCTCGTAATTTCTTCACTTTGTGTTTCCCGCTCGTGCATTGCTGCTAGATGCAATGGCAATGCACGAACAACGCTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTGTATCGACGTTCGTAATCATATGTATGTACCGTTTG ] [+] EMBL AU071001 [ CCCCGACACACCGGCCAATCGATCGATGCCATCCATCATNCACACGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTNCTCGTAATTTCTTCACTTTGTGTTTCCNGCTCGTGCATTGCTGCTAGATGCAATGGCAATGCACGAANAACNNTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTGTATCGACGTTCGTAATCATATGTNTGTACCGTTTGGTTAAAAAAA ] [+] EMBL CF308560 [ CGAACAACGCTGTT ATATACTCTCCGTATGTAAACTTCTGTTCTCTGTATCGACGTTCGTAATCATATGTATGTACCGTTTGGTTTGGTTTTAGTTCAAATGTTTGCTGCTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTACCAAACAAAGGGGAAATTTCGGGCCCTAAAAA] consensusID : consensus_14675#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [AGCTGGCTACTGAGAGCAGTCGGTCACATGGCTGACACACGGCAGGCCGTCTTCATCTCCGTGCAAAGCACAACGTCACGTCTCGGTGCTGTCTCAGTGGCGAGGGTCTTAATCAGTGGCTATGGCTGAGCTTGATCACACACAGTCTCCTAGGACCAAGCCCAACCCTAACCTATATGCGCACTGCACAGCACGGGCAGGGCCACAAGGGTTCGTGATACTTGTGAATTGTGTGACGCCCGGGACATACCTATCTCTGGGCACAATATTGCAGATTGCGATGTGCACTATGCACTATGCAATGGCAACCACCGAGCTGGCCTGATGATGATGCTGCGGGTGGTGGATGCGGAGCTTTTGGATGTTTGCTCGTGAATTTGCTGTGCACCTTGTGGTGGTGTGTGCCCGCTGCGTGGCACTTGGCTGCTAAGATGGCAATGGGCATGGGCCCGAACACCGCTGGTTGCATGATGACTGCTGCCGTGATGGTGAAACTGTGCTGGTGTGGCTGCTGGGATGCGACCGTGTGCGTGAATGCATGATGGTATGTACCGTTTGGTTTGGTTTTAGTTCAAATGTTTGATGCTGTGTGTTTGGTTCTGTTTGAATTCAAGTATCAAATGTGTGCACGGATGAATTGAGAAAAAA] [+] EMBL BI803242 [AGCTGGCTACTGAGAGCAGTCGGTCACATGGCTGACACACGGCAGGCCGTCTTCATCTCCGTGCAAAGCACAACGTCACGTCTCGGTGCTGTCTCAGTGGCGAGGGTCTTAATCAGTGGCTATGGCTGAGCTTGATCACACACAGTCTCCTAGGACCAAGCCCAACCCTAACCTATATGCGCACTGCACAGCACGGGCAGGGCCACAAGGGTTCGTGATACTTGTGAATTGTGTGACGCCCGGGACATACCTATCTCTGGGCACAATATTGCAGATTGCGATGTGCACTATGCACTATGCAATGGCAACCACCGAGCTGGCCTGATGATGATGCTGCGGGTGGTGGATGCGGAGCTTTTGGATGTTTGCTCGTGAATTTGCTGTGCACCTTGTGGTGGTGTGTGCCCGCTGCGTGGCACTTGGCTGCTAAGATGGCAATGGGCATGGGCCCGAACACCGCTGGTTGCATGATGACTGCTGCCGTGATGGTGAAACTGTGCTGGTGTGGCTGCTGGGATGCGACCGTGTGCGTGAATGCATGATGGTATGTACCGTTTGGTTTGGTTTTAGTTCAAATGTTTGATGCTGTGTGTTTGGTTCTGTTTGAATTCAAGTATCAAATGTGTGCACGGATGAATTGAGAAAAAA] consensusID : consensus_14675#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [CACACGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCACATCGGCGGCTACGCGGGTGGCGCCTCCGCGTGCTTNAAGCCTTCGTCATCATCCTCCNCTTCACCAGCTGCTCTACGTCCCATGCTCCACGGNGGGCTCTTCTCCGGCAACCACGCCNCCGGCGCCCGNGGCTACTGGGGNGANTACCCCGCCNACCACCACCACAAGACCCGCCGCCGCGGGCAAGGTCTAACTGAATTTGAACCCNANACACGGGCAATCGATCNATGCCAANCATCATGCATNCGAATGCCTATATTCTCGGNGTNAATCAAACTTTGANTTCCCCNNATTCTTCACTTTGTNTTTNCCCNCTCNTGCATTGCTGCTNAATTCAATNGCAATTCACGAACAACCTGTTCATATACTCTCCGTATGTAAACTNCTGTTCTCTGTATCNACTTTCCTAATCATATNTTNTTTACCGTTTGGGTTTGGT] [+] EMBL BE228463 [CACACGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCACATCGGCGGCTACGCGGGTGGCGCCTCCGCGTGCTTNAAGCCTTCGTCATCATCCTCCNCTTCACCAGCTGCTCTACGTCCCATGCTCCACGGNGGGCTCTTCTCCGGCAACCACGCCNCCGGCGCCCGNGGCTACTGGGGNGANTACCCCGCCNACCACCACCACAAGACCCGCCGCCGCGGGCAAGGTCTAACTGAATTTGAACCCNANACACGGGCAATCGATCNATGCCAANCATCATGCATNCGAATGCCTATATTCTCGGNGTNAATCAAACTTTGANTTCCCCNNATTCTTCACTTTGTNTTTNCCCNCTCNTGCATTGCTGCTNAATTCAATNGCAATTCACGAACAACCTGTTCATATACTCTCCGTATGTAAACTNCTGTTCTCTGTATCNACTTTCCTAATCATATNTTNTTTACCGTTTGGGTTTGGT] consensusID : consensus_14675#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 463 fasta sequence [GCNGCAGCTGCTCTACGTCGCCATGCTCCACGGCGGCCTCTTCTCCGGCAACCACGCCGCCGGGCCGGCGNTTACGGCGGCGACTACCCCGCCGACCACCACCACAAGCCCGCCGCCGCGGCCAGGGTCTAACTGAATTTGACCCCGACACACCGGCCAATCGATCGATGCCATCCATCATGCACACGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTTCTCGTAATTTCTTCACTTTGTGTTTCCCGCTNGTGCATTGCTGCTAGATGCAATGGCAATGCACGAACAACGCTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTTGTATCGACGTTCGTAATCATATGTATGTACCG-TTGGTTTNGGTTTAGTTCAAATGTTTGCTGCTGTGTGTTTNGGTTCTGTTTGAATTCAAGTATAAAATGTGTGCACGGATGAATTGAGAAAAAA] [+] EMBL OSC407 [GCNGCAGCTGCTCTACGTCGCCATGCTCCACGGCGGCCTCTTCTCCGGCAACCACGCCGCCGGGCCGGCGNTTACGGCGGCGACTACCCCGCCGACCACCACCACAAGCCCGCCGCCGCGGCCAGGGTCTAACTGAATTTGACCCCGACACACCGGCCAATCGATCGATGCCATCCATCATGCACACGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTTCTCGTAATTTCTTCACTTTGTGTTTCCCGCTNGTGCATTGCTGCTAGATGCAATGGCAATGCACGAACAACGCTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTTGTATCGACGTTCGTAATCATATGTATGTACCG TTGGTTTNGGTTTAGTTCAAATGTTTGCTGCTGTGTGTTTNGGTTCTG ] [+] EMBL C99180 [ CGCCGACCACCACCACAAGCCCGCCGCCGCGGCNAGGGTCTAACTGAATTTGACCCCGACACACCGGCCAATCGATCGATGCCATCCATCATGCACNCGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTTCTCGTAATTTCTTCACTTTGTGTTTCCCGCTCGTGCATTGCTGCTAGATGCAATGGCAATGCACGAACAACGCTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTC TGTATCGACGTTCGTAATCATATGTATGTACCGTTTGGTTTGGTTTTAGTTCAAATGTTTGCTGCTGTGTGTTT GGTTCTGTTTGAATTCAAGTATAAAATGTGTGCACGGATGAATTGAGAAAAAA] consensusID : consensus_14675#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [CCACCGCKNGGTGSGCCTTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCAGCTGCTTTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTNCCCGACACGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACCGAGGCTCTGCCTGTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTATGTGACCGTACCTAGTACGTACTTTGATCGT] [+] EMBL AA752576 [CCACCGCKNGGTGSGCCTTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCAGCTGCTTTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTNCCCGACACGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACCGAGGCTCTGCCTGTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTATGTGACCGTACCTAGTACGTACTTTGATCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14675#0 TTCNAGCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTA 60 consensus_14675#5 ------------------------------------------------------------ consensus_14675#1 ------------------------------------------------------------ consensus_14675#3 ------------------------------------------------------------ consensus_14675#4 ------------------------------------------------------------ consensus_14675#2 ------------------------------------------------------------ consensus_14675#0 CGTGCGTGAGAGAGCTAAGCATAGAGCTAGTGGAGTGGACCGGCCTCACTCGATCTCAGT 120 consensus_14675#5 ------------------------------------------------------------ consensus_14675#1 -----------------------------------------------------ACAGTAG 7 consensus_14675#3 ------------------------------------------------------------ consensus_14675#4 ------------------------------------------------------------ consensus_14675#2 ------------------------------------------------------------ consensus_14675#0 TCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCA 180 consensus_14675#5 ------------------------------------------------------------ consensus_14675#1 CTCTCAGCTAGCTAGCTAAACCAGTGCTAATTGTGTTGCTAATTTGTGTTGATTTGTGAT 67 consensus_14675#3 ------------------------------------------------------------ consensus_14675#4 ------------------------------------------------------------ consensus_14675#2 ------------------------------------------------------------ consensus_14675#0 GGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACC 240 consensus_14675#5 ------------------------------------------------------------ consensus_14675#1 TTTGATACGAGATGGCCGGAGTAGGGAGGACGATGATCGCGCCGCTGCTGGTGCTGAATC 127 consensus_14675#3 ------------------------------------------------------------ consensus_14675#4 ------------------------------------------------------------ consensus_14675#2 ------------------------------------------------------------ consensus_14675#0 TCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTGGAACCTCAACCACTTCATCAATG 300 consensus_14675#5 ------------------------------------------------------------ consensus_14675#1 TGATCATGTACTTGATCGTGATCGGGTTCGCGAGCTGGAATCTCAACCACTACATCAACG 187 consensus_14675#3 ------------------------------------------------------------ consensus_14675#4 ------------------------------------------------------------ consensus_14675#2 ------------------------------------------------------------ consensus_14675#0 GCCAGACCAACTACCCAGGCGTGGCGGGCAACGGCGCGACGTTCTACTTCCTGGTGTTCG 360 consensus_14675#5 ------------------------------------------------------------ consensus_14675#1 GCGAGACCAACCACCCGGGGGTCGCCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCG 247 consensus_14675#3 ------------------------------------------------------------ consensus_14675#4 ------------------------------------------------------------ consensus_14675#2 ------------------------------------------------------------ consensus_14675#0 CCATCCTGGCCGGGGTGGTGGGCGCGGCGTCCAAGCTGGCGGGCGTCCACCACGTGCGCG 420 consensus_14675#5 ------------------------------------------------------------ consensus_14675#1 CCATCCTCGCGGGGGTGGTCGGCGCCGCCTCCAAGCTCGCCGGCGTCCACCACGTCCGCT 307 consensus_14675#3 ------------------------------------------------------------ consensus_14675#4 ------------------------------------------------------------ consensus_14675#2 -----------------------------------------------AGCTGGCTACTGA 13 consensus_14675#0 CGTGGCGCCACGACAGCCTCGCCACCAACGCGGCCTCCTCCCTCATCGCGTGGGCCATCA 480 consensus_14675#5 ------------------------------------------------------------ consensus_14675#1 CCTGGGGCGCGCACAGCCTCGCCGCCGGCGCCGCGTCGGCGCTCATCGCCTGGGCCATCA 367 consensus_14675#3 ----------------------------------------------------------CA 2 consensus_14675#4 ------------------------------------------------------------ consensus_14675#2 GAGCAGTCGGTCACATGGCTGACACACGGCAGGCCGTCTTCATCTCCGTGCAAAGCACAA 73 consensus_14675#0 C--CGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCCACCGC-GGGT 537 consensus_14675#5 ------------------------------------------------CCACCGC-KNGG 11 consensus_14675#1 C--CGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCTACCGC-GGGT 424 consensus_14675#3 CA-CGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATC-ACATCGGCGGCTAC-GC-GGGT 58 consensus_14675#4 ------------------------------------------------------------ consensus_14675#2 CGTCACGTCTCGGTGCTGTCTCAGTGGCGAGGG--TCTTAATCAGTGGCTATGGCTGAGC 131 consensus_14675#0 GGCGCCT-CCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCA-GCTGCTCTA 595 consensus_14675#5 TGSGCCTTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCA-GCTGCTTTA 70 consensus_14675#1 GGCGCCT-CCGCGTGCTCGAGGCCTTCGTCATCATCCTCGCCTTCACGCA-GCTGCTCTA 482 consensus_14675#3 GGCGCCT-CCGCGTGCTTNAAGCCTTCGTCATCATCCTCCNCTTCAC-CA-GCTGCTCTA 115 consensus_14675#4 --------------------------------------------GCNGCA-GCTGCTCTA 15 consensus_14675#2 TTGATCACACACAGTCTCCTAGGACCAAGCCCAACCCTAACCTATATGCGCACTGCACAG 191 * **** consensus_14675#0 CGTGCTCATGCTCCACACGGGCCTCT----TCGGTGGCGGCGACGGCGCCTACCGGGACC 651 consensus_14675#5 CGTGCTCATGCTCCACACGGGCCTCT----TCGGTGGCGGCGACGGCGCC---------- 116 consensus_14675#1 CGTCGCCATGCTCCACGGCGGCCTCT----TCTCCGGCAACCACGCCGCCGGCGCCGGCG 538 consensus_14675#3 CGTC-CCATGCTCCACGGNGGGCTCT----TCTCCGGCAACCACGCCNCCGGCGCCCGNG 170 consensus_14675#4 CGTCGCCATGCTCCACGGCGGCCTCT----TCTCCGGCAACCACGCCGCCGG-GCCGGCG 70 consensus_14675#2 CACGGGCAGGG-CCACAAGGGTTCGTGATACTTGTGAATTGTGTGACGCCCGGGACATAC 250 * ** * **** ** * * * * ** consensus_14675#0 ACGACTACGGCGTTGGCGCCGGTG-CTGCCGC---CGGCGAGCCCAAGGGGACAGCGAGG 707 consensus_14675#5 --------------------GGTG-CTGCCGC---CGGCGAGCCCAAGGGGACAGCGAGG 152 consensus_14675#1 GCTACGGCGGCGACTACCCCGCCGACCACCAC---CACAAG-CCCGCCGCCGCGGCCAGG 594 consensus_14675#3 GCTACTGGGGNGANTACCCCGCCNACCACCAC---CACAAGACCCGCCGCCGCGGGCAAG 227 consensus_14675#4 NTTACGGCGGCGACTACCCCGCCGACCACCAC---CACAAG-CCCGCCGCCGCGGCCAGG 126 consensus_14675#2 CTATCTCTGGGCACAATATTGCAGATTGCGATGTGCACTATGCACTATGCAATGGCAACC 310 * * * * * * * * consensus_14675#0 GTCTGATCGATGATCTCCCCGACACGGGGTC--ACGCAA-GAATAAACGATAATACATAC 764 consensus_14675#5 GTCTGATCGATGATCTNCCCGACACGGG-TC--ACGCAA-GAATAAACGATAATACATAC 208 consensus_14675#1 GTCTAACTGAATTTGACCCCGACACACCGGCCAATCGAT-CGATGCCATCCATCATGCAC 653 consensus_14675#3 GTCTAACTGAATTTGAACCCNANACACGGGC-AATCGAT-CNATGCCAANCATCATGCAT 285 consensus_14675#4 GTCTAACTGAATTTGACCCCGACACACCGGCCAATCGAT-CGATGCCATCCATCATGCAC 185 consensus_14675#2 ACCGAGCTGG-CCTGATGATGATGCTGCGGGTGGTGGATGCGGAGCTTTTGGATGTTTGC 369 * * * * * * consensus_14675#0 TTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCA 824 consensus_14675#5 TTGATGGTCATTTTGTGTGTGTGACAGTGTGACCG--AGGCTCTGCCTGTGTGTGCAGCA 266 consensus_14675#1 ACGACTGCCTATATATCTCGGTGTGA-TCGAGCTTTGATTTTCTCGTAATTTCTTCA-CT 711 consensus_14675#3 NCGAATGCCTATAT-TCTCGGNGTNAATCAAACTTTGANTTCCCCNNA--TTCTTCA-CT 341 consensus_14675#4 ACGACTGCCTATATATCTCGGTGTGA-TCGAGCTTTGATTTTCTCGTAATTTCTTCA-CT 243 consensus_14675#2 TCGTGAATTTGCTGTGCACCTTGTGGTGGTGTGTGCCCGCTGCGTGGCACTTGGCTGCTA 429 * * * * consensus_14675#0 GTGCAGTGTAAGCTCTGTGCTCTC--GCCTTTAATTACACTACTAGT---TGTTTAGCGT 879 consensus_14675#5 GTGCAGTGTAAGCTCTGTGCTCTC--GCCTTTAATTACACTACTAGT---TGTTTAGCGT 321 consensus_14675#1 TTGTGTTTCCC-GCTCGTGCATT---GCTGCTAGATGCAATGGCAATGCACGAACAACGC 767 consensus_14675#3 TTGTNTTTNCCCNCTCNTGCATT---GCTGCTNAATTCAATNGCAATTCACGAACAAC-C 397 consensus_14675#4 TTGTGTTTCCC-GCTNGTGCATT---GCTGCTAGATGCAATGGCAATGCACGAACAACGC 299 consensus_14675#2 AGATGGCAATGGGCATGGGCCCGAACACCGCTGGTTGCATGATGACTGCTGCCGTGATGG 489 ** * * * ** * * consensus_14675#0 TGTGTGTTGGGTTTGTGTAGCTTG--TACATGTGTGT-ATGTGACCGTACCTAGT-ACGT 935 consensus_14675#5 TGTGTGTTGGGTTTGTGTAGCTTG--TACA----TGT-ATGTGACCGTACCTAGT-ACGT 373 consensus_14675#1 TGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCT-GTATCGACGTTCGTAATCATAT 826 consensus_14675#3 TGTTCATATACTCTCCGTATGTAAACTNCTGTTCTCT-GTATCNACTTTCCTAATCATAT 456 consensus_14675#4 TGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTTGTATCGACGTTCGTAATCATAT 359 consensus_14675#2 TGAAACTGTGCTG-GTGTGGCTGCTGGGATGCGACCGTGTGCGTGAATGCATGATGGTAT 548 ** * * ** * * * * * * * consensus_14675#0 AC-TTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGT 994 consensus_14675#5 AC-TTTGATCGT------------------------------------------------ 384 consensus_14675#1 GT-ATGTACCGTTTGGTTAAAAAAAAGTTCAAATGTTTGCTGCTGTGTAAAAAAAAAAAA 885 consensus_14675#3 NTTNTTTACCGTTTGGGTTTGGT------------------------------------- 479 consensus_14675#4 GT-ATGTACCGTT-GGTTTNGGTTTAGTTCAAATGTTTGCTGCTGTGTGTTTNGGTTCTG 417 consensus_14675#2 GT-----ACCGTTTGGTTTGGTTTTAGTTCAAATGTTTGATGCTGTGTGTTTG-GTTCTG 602 * *** consensus_14675#0 GCCGTCCTCAATTAATTACTCAAAGTCACCGAAAAAAAAAAAAAAAAA------------ 1042 consensus_14675#5 ------------------------------------------------------------ consensus_14675#1 AAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 945 consensus_14675#3 ------------------------------------------------------------ consensus_14675#4 TTTGAATTCAAGTATAAAATGTGTGCACGGATGAATTGAGAAAAAA-------------- 463 consensus_14675#2 TTTGAATTCAAGTATCAAATGTGTGCACGGATGAATTGAGAAAAAA-------------- 648 consensus_14675#0 ------------------------------------------------------------ consensus_14675#5 ------------------------------------------------------------ consensus_14675#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTACCAAACAAAGGG 1005 consensus_14675#3 ------------------------------------------------------------ consensus_14675#4 ------------------------------------------------------------ consensus_14675#2 ------------------------------------------------------------ consensus_14675#0 -------------------- consensus_14675#5 -------------------- consensus_14675#1 GAAATTTCGGGCCCTAAAAA 1025 consensus_14675#3 -------------------- consensus_14675#4 -------------------- consensus_14675#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||