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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1042 fasta sequence
[TTCNAGCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTACGTGCGTGAGAGAGCTAAGCATAGAGCTAGTGGAGTGGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG-GAACCTCAACCACTTCATCAATGGCCAGACCAACTACCCAGGCGTGGCGGGCAACGGCGCGACGTTCTACTTCCT-GGTGTTCGCCATCCTGGCCGGGGTGGTGGGCGCGGCGTCCAAGCTGGCGGGCGTCCACCACGTGCGCGCGTGGCGCCACGACAGCCTCGCCACCAACGCGGCCTCCTCCCTCATCGCGTGGGCCATCACCGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCCACCGCGGGTGGCGCCTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCAGCTGCTCTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCTACCGGGACC-ACGACTACGGCGTTGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTCCCCGACACGGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTGTGTATGTGACCGTACCTAGTACGTACTTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGTGCCGTCCTCAATTAATTACTCAAAGTCACCGAAAAAAAAAAAAAAAAA]
[+] EMBL OSC753 [TTCNAGCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTACNTGCGTGAGAGAGCTAAGCATAGAGCTAGTGGAGTNGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAG TATCAGGGTAGCAGCCATNGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTCANCCACTTCATCAATGGCCAGACCAACT ]
[+] EMBL OSC707 [TTCTAGCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTACGTGCGTGAGAGAGCTAAGCATAGAGCTAGTGGAGTGGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAG TATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTCAACCACTTCATCAATGGCCAGACCAACTACCCAGGCGTGGCGGGCAACGGCGCGACGTTCTACTTTCTGGGTGTTCG CATNCTGGCCGGGGTGGTGGGCGCGGCGTCCAAG TTGCGG ]
[+] EMBL C28696 [ AGCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTACGTNCGTAANAAAGCTAAGCATAGAGCTAGTGGAGTGGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTCAACCACTTCATCAATGGNCA ]
[+] EMBL AU063363 [ AGCTAGTGTTGCCCACCTTGATTTGCTCNNACTNTGATTCTTTCTGNCTCTGCGNACGTGCGTGAGAGAGCTAAGCATAGAGCTANTGGAGTGGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTNTTCTGCGTCGNCGTCGTCGTCCANCGGTGAGCTATCAGGGTAGCAGCCATNGCCGGAGTCGNGAGGAACATGCTGGCGACGCTCTTGGTGCTCAACCTCATCATGTACCTCATCNTCATCGGCTTCGCGAGCTGNGAACCTCAACCACTTCATCAATGGCCANACCAACTACCC ]
[+] EMBL C97717 [ GCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTACGTGCGTNANAAAGCTAAGCATAGAGCTAGTGGAGTGGACCGGCCTCACTCGATCTCAGTTCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTNAACCANTTCATCAATGGCCAGACCAACTACCCAG ]
[+] EMBL U57639 [ ATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTCAACCACTTCATCAATGGCCAGACCAACTACCCAGGCGTGGCGGGCAACGGCGCGACGTTCTACTTCCT GGTGTTCGCCATCCTGGCCGGGGTGGTGGGCGCGGCGTCCAAGCTGGCGGGCGTCCACCACGTGCGCGCGTGGCGCCACGACAGCCTCGCCACCAACGCGGCCTCCTCCCTCATCGCGTGGGCCATCACCGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCCACCGCGGGTGGCGCCTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCAGCTGCTCTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCTACCGGGACC ACGACTACGGCGTTGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTCCCCGACACGGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTGTGTATGTGACCGTACCTAGTACGTACTTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGTGCCGTCCTCAATTAATTACTCCTTGTCACCGAAAAAAAAAAAAAAAAA]
[+] EMBL AK063592 [ TCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCAGGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACCTCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTG GAACCTCAACCACTTCATCAATGGCCAGACCAACTACCCAGGCGTGGCGGGCAACGGCGCGACGTTCTACTTCCT GGTGTTCGCCATCCTGGCCGGGGTGGTGGGCGCGGCGTCCAAGCTGGCGGGCGTCCACCACGTGCGCGCGTGGCGCCACGACAGCCTCGCCACCAACGCGGCCTCCTCCCTCATCGCGTGGGCCATCACCGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCCACCGCGGGTGGCGCCTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCAGCTGCTCTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCTACCGGGACC ACGACTACGGCGTTGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTCCCCGACACGGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTGTGTATGTGACCGTACCTAGTACGTACTTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGTGCCGTCCTCAATTAATTACTC ]
[+] EMBL AU181869 [ ACGCAGCTGCTCTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCTACCGGGACC ACGACTACGGCGTTGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTCCCCGACACGGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTGTGTATGTGACCGTACCTAGTACGTACTTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGTGCCGTCCTCAATTAAaaaaaaaaa ]
[+] EMBL AU100990 [ ACCGGGACCAACGNCTACGGCGTTGGCGCCGGTGCTGCCGCCGGCNAGCCCAAGGGAACAGCGAGGGTCTGATCGATGATCTCCCCGACACGGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTGTGTATGTGACCGTACCTAGTACGTACTTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGTGCCGTCCTCAATTAAaaaaaaaaa ]
consensusID : consensus_14675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1025 fasta sequence
[ACAGTAGCTCTCAGCTAGCTAGCTAAACCAGTGCTAATTGTGTTGCTAATTTGTGTTGATTTGTGATTTTGATACGAGATGGCCGGAGTAGGGAGGACGATGATCGCGCCGCTGCTGGTGCTGAATCTGATCATGTACTTGATCGTGATCGGGTTCGCGAGCTGGAATCTCAACCACTACATCAACGGCGAGACCAACCACCCGGGGGTCGCCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTCGCGGGGGTGGTCGGCGCCGCCTCCAAGCTCGCCGGCGTCCACCACGTCCGCTCCTGGGGCGCGCACAGCCTCGCCGCCGGCGCCGCGTCGGCGCTCATCGCCTGGGCCATCACCGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCTACCGCGGGTGGCGCCTCCGCGTGCTCGAGGCCTTCGTCATCATCCTCGCCTTCACGCAGCTGCTCTACGTCGCCATGCTCCACGGCGGCCTCTTCTCCGGCAACCACGCCGCCGGCGCCGGCGGCTACGGCGGCGACTACCCCGCCGACCACCACCACAAGCCCGCCGCCGCGGCCAGGGTCTAACTGAATTTGACCCCGACACACCGGCCAATCGATCGATGCCATCCATCATGCACACGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTTCTCGTAATTTCTTCACTTTGTGTTTCCCGCTCGTGCATTGCTGCTAGATGCAATGGCAATGCACGAACAACGCTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTGTATCGACGTTCGTAATCATATGTATGTACCGTTTGGTTAAAAAAAAGTTCAAATGTTTGCTGCTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTACCAAACAAAGGGGAAATTTCGGGCCCTAAAAA]
[+] EMBL AK102039 [ACAGTAGCTCTCAGCTAGCTAGCTAAACCAGTGCTAATTGTGTTGCTAATTTGTGTTGATTTGTGATTTTGATACGAGATGGCCGGAGTAGGGAGGACGATGATCGCGCCGCTGCTGGTGCTGAATCTGATCATGTACTTGATCGTGATCGGGTTCGCGAGCTGGAATCTCAACCACTACATCAACGGCGAGACCAACCACCCGGGGGTCGCCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTCGCGGGGGTGGTCGGCGCCGCCTCCAAGCTCGCCGGCGTCCACCACGTCCGCTCCTGGGGCGCGCACAGCCTCGCCGCCGGCGCCGCGTCGGCGCTCATCGCCTGGGCCATCACCGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCTACCGCGGGTGGCGCCTCCGCGTGCTCGAGGCCTTCGTCATCATCCTCGCCTTCACGCAGCTGCTCTACGTCGCCATGCTCCACGGCGGCCTCTTCTCCGGCAACCACGCCGCCGGCGCCGGCGGCTACGGCGGCGACTACCCCGCCGACCACCACCACAAGCCCGCCGCCGCGGCCAGGGTCTAACTGAATTTGACCCCGACACACCGGCCAATCGATCGATGCCATCCATCATGCACACGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTTCTCGTAATTTCTTCACTTTGTGTTTCCCGCTCGTGCATTGCTGCTAGATGCAATGGCAATGCACGAACAACGCTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTGTATCGACGTTCGTAATCATATGTATGTACCGTTTG ]
[+] EMBL AU071001 [ CCCCGACACACCGGCCAATCGATCGATGCCATCCATCATNCACACGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTNCTCGTAATTTCTTCACTTTGTGTTTCCNGCTCGTGCATTGCTGCTAGATGCAATGGCAATGCACGAANAACNNTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTGTATCGACGTTCGTAATCATATGTNTGTACCGTTTGGTTAAAAAAA ]
[+] EMBL CF308560 [ CGAACAACGCTGTT ATATACTCTCCGTATGTAAACTTCTGTTCTCTGTATCGACGTTCGTAATCATATGTATGTACCGTTTGGTTTGGTTTTAGTTCAAATGTTTGCTGCTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTACCAAACAAAGGGGAAATTTCGGGCCCTAAAAA]
consensusID : consensus_14675#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[AGCTGGCTACTGAGAGCAGTCGGTCACATGGCTGACACACGGCAGGCCGTCTTCATCTCCGTGCAAAGCACAACGTCACGTCTCGGTGCTGTCTCAGTGGCGAGGGTCTTAATCAGTGGCTATGGCTGAGCTTGATCACACACAGTCTCCTAGGACCAAGCCCAACCCTAACCTATATGCGCACTGCACAGCACGGGCAGGGCCACAAGGGTTCGTGATACTTGTGAATTGTGTGACGCCCGGGACATACCTATCTCTGGGCACAATATTGCAGATTGCGATGTGCACTATGCACTATGCAATGGCAACCACCGAGCTGGCCTGATGATGATGCTGCGGGTGGTGGATGCGGAGCTTTTGGATGTTTGCTCGTGAATTTGCTGTGCACCTTGTGGTGGTGTGTGCCCGCTGCGTGGCACTTGGCTGCTAAGATGGCAATGGGCATGGGCCCGAACACCGCTGGTTGCATGATGACTGCTGCCGTGATGGTGAAACTGTGCTGGTGTGGCTGCTGGGATGCGACCGTGTGCGTGAATGCATGATGGTATGTACCGTTTGGTTTGGTTTTAGTTCAAATGTTTGATGCTGTGTGTTTGGTTCTGTTTGAATTCAAGTATCAAATGTGTGCACGGATGAATTGAGAAAAAA]
[+] EMBL BI803242 [AGCTGGCTACTGAGAGCAGTCGGTCACATGGCTGACACACGGCAGGCCGTCTTCATCTCCGTGCAAAGCACAACGTCACGTCTCGGTGCTGTCTCAGTGGCGAGGGTCTTAATCAGTGGCTATGGCTGAGCTTGATCACACACAGTCTCCTAGGACCAAGCCCAACCCTAACCTATATGCGCACTGCACAGCACGGGCAGGGCCACAAGGGTTCGTGATACTTGTGAATTGTGTGACGCCCGGGACATACCTATCTCTGGGCACAATATTGCAGATTGCGATGTGCACTATGCACTATGCAATGGCAACCACCGAGCTGGCCTGATGATGATGCTGCGGGTGGTGGATGCGGAGCTTTTGGATGTTTGCTCGTGAATTTGCTGTGCACCTTGTGGTGGTGTGTGCCCGCTGCGTGGCACTTGGCTGCTAAGATGGCAATGGGCATGGGCCCGAACACCGCTGGTTGCATGATGACTGCTGCCGTGATGGTGAAACTGTGCTGGTGTGGCTGCTGGGATGCGACCGTGTGCGTGAATGCATGATGGTATGTACCGTTTGGTTTGGTTTTAGTTCAAATGTTTGATGCTGTGTGTTTGGTTCTGTTTGAATTCAAGTATCAAATGTGTGCACGGATGAATTGAGAAAAAA]
consensusID : consensus_14675#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence
[CACACGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCACATCGGCGGCTACGCGGGTGGCGCCTCCGCGTGCTTNAAGCCTTCGTCATCATCCTCCNCTTCACCAGCTGCTCTACGTCCCATGCTCCACGGNGGGCTCTTCTCCGGCAACCACGCCNCCGGCGCCCGNGGCTACTGGGGNGANTACCCCGCCNACCACCACCACAAGACCCGCCGCCGCGGGCAAGGTCTAACTGAATTTGAACCCNANACACGGGCAATCGATCNATGCCAANCATCATGCATNCGAATGCCTATATTCTCGGNGTNAATCAAACTTTGANTTCCCCNNATTCTTCACTTTGTNTTTNCCCNCTCNTGCATTGCTGCTNAATTCAATNGCAATTCACGAACAACCTGTTCATATACTCTCCGTATGTAAACTNCTGTTCTCTGTATCNACTTTCCTAATCATATNTTNTTTACCGTTTGGGTTTGGT]
[+] EMBL BE228463 [CACACGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCACATCGGCGGCTACGCGGGTGGCGCCTCCGCGTGCTTNAAGCCTTCGTCATCATCCTCCNCTTCACCAGCTGCTCTACGTCCCATGCTCCACGGNGGGCTCTTCTCCGGCAACCACGCCNCCGGCGCCCGNGGCTACTGGGGNGANTACCCCGCCNACCACCACCACAAGACCCGCCGCCGCGGGCAAGGTCTAACTGAATTTGAACCCNANACACGGGCAATCGATCNATGCCAANCATCATGCATNCGAATGCCTATATTCTCGGNGTNAATCAAACTTTGANTTCCCCNNATTCTTCACTTTGTNTTTNCCCNCTCNTGCATTGCTGCTNAATTCAATNGCAATTCACGAACAACCTGTTCATATACTCTCCGTATGTAAACTNCTGTTCTCTGTATCNACTTTCCTAATCATATNTTNTTTACCGTTTGGGTTTGGT]
consensusID : consensus_14675#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 463 fasta sequence
[GCNGCAGCTGCTCTACGTCGCCATGCTCCACGGCGGCCTCTTCTCCGGCAACCACGCCGCCGGGCCGGCGNTTACGGCGGCGACTACCCCGCCGACCACCACCACAAGCCCGCCGCCGCGGCCAGGGTCTAACTGAATTTGACCCCGACACACCGGCCAATCGATCGATGCCATCCATCATGCACACGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTTCTCGTAATTTCTTCACTTTGTGTTTCCCGCTNGTGCATTGCTGCTAGATGCAATGGCAATGCACGAACAACGCTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTTGTATCGACGTTCGTAATCATATGTATGTACCG-TTGGTTTNGGTTTAGTTCAAATGTTTGCTGCTGTGTGTTTNGGTTCTGTTTGAATTCAAGTATAAAATGTGTGCACGGATGAATTGAGAAAAAA]
[+] EMBL OSC407 [GCNGCAGCTGCTCTACGTCGCCATGCTCCACGGCGGCCTCTTCTCCGGCAACCACGCCGCCGGGCCGGCGNTTACGGCGGCGACTACCCCGCCGACCACCACCACAAGCCCGCCGCCGCGGCCAGGGTCTAACTGAATTTGACCCCGACACACCGGCCAATCGATCGATGCCATCCATCATGCACACGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTTCTCGTAATTTCTTCACTTTGTGTTTCCCGCTNGTGCATTGCTGCTAGATGCAATGGCAATGCACGAACAACGCTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTTGTATCGACGTTCGTAATCATATGTATGTACCG TTGGTTTNGGTTTAGTTCAAATGTTTGCTGCTGTGTGTTTNGGTTCTG ]
[+] EMBL C99180 [ CGCCGACCACCACCACAAGCCCGCCGCCGCGGCNAGGGTCTAACTGAATTTGACCCCGACACACCGGCCAATCGATCGATGCCATCCATCATGCACNCGACTGCCTATATATCTCGGTGTGATCGAGCTTTGATTTTCTCGTAATTTCTTCACTTTGTGTTTCCCGCTCGTGCATTGCTGCTAGATGCAATGGCAATGCACGAACAACGCTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTC TGTATCGACGTTCGTAATCATATGTATGTACCGTTTGGTTTGGTTTTAGTTCAAATGTTTGCTGCTGTGTGTTT GGTTCTGTTTGAATTCAAGTATAAAATGTGTGCACGGATGAATTGAGAAAAAA]
consensusID : consensus_14675#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[CCACCGCKNGGTGSGCCTTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCAGCTGCTTTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTNCCCGACACGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACCGAGGCTCTGCCTGTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTATGTGACCGTACCTAGTACGTACTTTGATCGT]
[+] EMBL AA752576 [CCACCGCKNGGTGSGCCTTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCAGCTGCTTTACGTGCTCATGCTCCACACGGGCCTCTTCGGTGGCGGCGACGGCGCCGGTGCTGCCGCCGGCGAGCCCAAGGGGACAGCGAGGGTCTGATCGATGATCTNCCCGACACGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGTGTGACAGTGTGACCGAGGCTCTGCCTGTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTACTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTATGTGACCGTACCTAGTACGTACTTTGATCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14675#0 TTCNAGCTAGTGTTGCCCACCTTGATTTGCTCGTACTTTGATTCTTTCTGCCTCTGCGTA 60
consensus_14675#5 ------------------------------------------------------------
consensus_14675#1 ------------------------------------------------------------
consensus_14675#3 ------------------------------------------------------------
consensus_14675#4 ------------------------------------------------------------
consensus_14675#2 ------------------------------------------------------------
consensus_14675#0 CGTGCGTGAGAGAGCTAAGCATAGAGCTAGTGGAGTGGACCGGCCTCACTCGATCTCAGT 120
consensus_14675#5 ------------------------------------------------------------
consensus_14675#1 -----------------------------------------------------ACAGTAG 7
consensus_14675#3 ------------------------------------------------------------
consensus_14675#4 ------------------------------------------------------------
consensus_14675#2 ------------------------------------------------------------
consensus_14675#0 TCTCGATCGATCTCTTCTTCGTCTTCTGCGTCGTCGTCGTCGTCCAGCGGTGAGCTATCA 180
consensus_14675#5 ------------------------------------------------------------
consensus_14675#1 CTCTCAGCTAGCTAGCTAAACCAGTGCTAATTGTGTTGCTAATTTGTGTTGATTTGTGAT 67
consensus_14675#3 ------------------------------------------------------------
consensus_14675#4 ------------------------------------------------------------
consensus_14675#2 ------------------------------------------------------------
consensus_14675#0 GGGTAGCAGCCATGGCCGGAGTCGGGAGGAACATGCTGGCGCCGCTCTTGGTGCTCAACC 240
consensus_14675#5 ------------------------------------------------------------
consensus_14675#1 TTTGATACGAGATGGCCGGAGTAGGGAGGACGATGATCGCGCCGCTGCTGGTGCTGAATC 127
consensus_14675#3 ------------------------------------------------------------
consensus_14675#4 ------------------------------------------------------------
consensus_14675#2 ------------------------------------------------------------
consensus_14675#0 TCATCATGTACCTCATCGTCATCGGCTTCGCGAGCTGGAACCTCAACCACTTCATCAATG 300
consensus_14675#5 ------------------------------------------------------------
consensus_14675#1 TGATCATGTACTTGATCGTGATCGGGTTCGCGAGCTGGAATCTCAACCACTACATCAACG 187
consensus_14675#3 ------------------------------------------------------------
consensus_14675#4 ------------------------------------------------------------
consensus_14675#2 ------------------------------------------------------------
consensus_14675#0 GCCAGACCAACTACCCAGGCGTGGCGGGCAACGGCGCGACGTTCTACTTCCTGGTGTTCG 360
consensus_14675#5 ------------------------------------------------------------
consensus_14675#1 GCGAGACCAACCACCCGGGGGTCGCCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCG 247
consensus_14675#3 ------------------------------------------------------------
consensus_14675#4 ------------------------------------------------------------
consensus_14675#2 ------------------------------------------------------------
consensus_14675#0 CCATCCTGGCCGGGGTGGTGGGCGCGGCGTCCAAGCTGGCGGGCGTCCACCACGTGCGCG 420
consensus_14675#5 ------------------------------------------------------------
consensus_14675#1 CCATCCTCGCGGGGGTGGTCGGCGCCGCCTCCAAGCTCGCCGGCGTCCACCACGTCCGCT 307
consensus_14675#3 ------------------------------------------------------------
consensus_14675#4 ------------------------------------------------------------
consensus_14675#2 -----------------------------------------------AGCTGGCTACTGA 13
consensus_14675#0 CGTGGCGCCACGACAGCCTCGCCACCAACGCGGCCTCCTCCCTCATCGCGTGGGCCATCA 480
consensus_14675#5 ------------------------------------------------------------
consensus_14675#1 CCTGGGGCGCGCACAGCCTCGCCGCCGGCGCCGCGTCGGCGCTCATCGCCTGGGCCATCA 367
consensus_14675#3 ----------------------------------------------------------CA 2
consensus_14675#4 ------------------------------------------------------------
consensus_14675#2 GAGCAGTCGGTCACATGGCTGACACACGGCAGGCCGTCTTCATCTCCGTGCAAAGCACAA 73
consensus_14675#0 C--CGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCCACCGC-GGGT 537
consensus_14675#5 ------------------------------------------------CCACCGC-KNGG 11
consensus_14675#1 C--CGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATCCACATCGGCGGCTACCGC-GGGT 424
consensus_14675#3 CA-CGCGCTCGCCTTCGGCCTCGCCTGCAAGGAGATC-ACATCGGCGGCTAC-GC-GGGT 58
consensus_14675#4 ------------------------------------------------------------
consensus_14675#2 CGTCACGTCTCGGTGCTGTCTCAGTGGCGAGGG--TCTTAATCAGTGGCTATGGCTGAGC 131
consensus_14675#0 GGCGCCT-CCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCA-GCTGCTCTA 595
consensus_14675#5 TGSGCCTTCCGCGTGCTCGAGGCTTTCGTCATCATCCTCGCCTTCACGCA-GCTGCTTTA 70
consensus_14675#1 GGCGCCT-CCGCGTGCTCGAGGCCTTCGTCATCATCCTCGCCTTCACGCA-GCTGCTCTA 482
consensus_14675#3 GGCGCCT-CCGCGTGCTTNAAGCCTTCGTCATCATCCTCCNCTTCAC-CA-GCTGCTCTA 115
consensus_14675#4 --------------------------------------------GCNGCA-GCTGCTCTA 15
consensus_14675#2 TTGATCACACACAGTCTCCTAGGACCAAGCCCAACCCTAACCTATATGCGCACTGCACAG 191
* ****
consensus_14675#0 CGTGCTCATGCTCCACACGGGCCTCT----TCGGTGGCGGCGACGGCGCCTACCGGGACC 651
consensus_14675#5 CGTGCTCATGCTCCACACGGGCCTCT----TCGGTGGCGGCGACGGCGCC---------- 116
consensus_14675#1 CGTCGCCATGCTCCACGGCGGCCTCT----TCTCCGGCAACCACGCCGCCGGCGCCGGCG 538
consensus_14675#3 CGTC-CCATGCTCCACGGNGGGCTCT----TCTCCGGCAACCACGCCNCCGGCGCCCGNG 170
consensus_14675#4 CGTCGCCATGCTCCACGGCGGCCTCT----TCTCCGGCAACCACGCCGCCGG-GCCGGCG 70
consensus_14675#2 CACGGGCAGGG-CCACAAGGGTTCGTGATACTTGTGAATTGTGTGACGCCCGGGACATAC 250
* ** * **** ** * * * * **
consensus_14675#0 ACGACTACGGCGTTGGCGCCGGTG-CTGCCGC---CGGCGAGCCCAAGGGGACAGCGAGG 707
consensus_14675#5 --------------------GGTG-CTGCCGC---CGGCGAGCCCAAGGGGACAGCGAGG 152
consensus_14675#1 GCTACGGCGGCGACTACCCCGCCGACCACCAC---CACAAG-CCCGCCGCCGCGGCCAGG 594
consensus_14675#3 GCTACTGGGGNGANTACCCCGCCNACCACCAC---CACAAGACCCGCCGCCGCGGGCAAG 227
consensus_14675#4 NTTACGGCGGCGACTACCCCGCCGACCACCAC---CACAAG-CCCGCCGCCGCGGCCAGG 126
consensus_14675#2 CTATCTCTGGGCACAATATTGCAGATTGCGATGTGCACTATGCACTATGCAATGGCAACC 310
* * * * * * * *
consensus_14675#0 GTCTGATCGATGATCTCCCCGACACGGGGTC--ACGCAA-GAATAAACGATAATACATAC 764
consensus_14675#5 GTCTGATCGATGATCTNCCCGACACGGG-TC--ACGCAA-GAATAAACGATAATACATAC 208
consensus_14675#1 GTCTAACTGAATTTGACCCCGACACACCGGCCAATCGAT-CGATGCCATCCATCATGCAC 653
consensus_14675#3 GTCTAACTGAATTTGAACCCNANACACGGGC-AATCGAT-CNATGCCAANCATCATGCAT 285
consensus_14675#4 GTCTAACTGAATTTGACCCCGACACACCGGCCAATCGAT-CGATGCCATCCATCATGCAC 185
consensus_14675#2 ACCGAGCTGG-CCTGATGATGATGCTGCGGGTGGTGGATGCGGAGCTTTTGGATGTTTGC 369
* * * * * *
consensus_14675#0 TTGATGGTCATTTTGTGTGTGTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCA 824
consensus_14675#5 TTGATGGTCATTTTGTGTGTGTGACAGTGTGACCG--AGGCTCTGCCTGTGTGTGCAGCA 266
consensus_14675#1 ACGACTGCCTATATATCTCGGTGTGA-TCGAGCTTTGATTTTCTCGTAATTTCTTCA-CT 711
consensus_14675#3 NCGAATGCCTATAT-TCTCGGNGTNAATCAAACTTTGANTTCCCCNNA--TTCTTCA-CT 341
consensus_14675#4 ACGACTGCCTATATATCTCGGTGTGA-TCGAGCTTTGATTTTCTCGTAATTTCTTCA-CT 243
consensus_14675#2 TCGTGAATTTGCTGTGCACCTTGTGGTGGTGTGTGCCCGCTGCGTGGCACTTGGCTGCTA 429
* * * *
consensus_14675#0 GTGCAGTGTAAGCTCTGTGCTCTC--GCCTTTAATTACACTACTAGT---TGTTTAGCGT 879
consensus_14675#5 GTGCAGTGTAAGCTCTGTGCTCTC--GCCTTTAATTACACTACTAGT---TGTTTAGCGT 321
consensus_14675#1 TTGTGTTTCCC-GCTCGTGCATT---GCTGCTAGATGCAATGGCAATGCACGAACAACGC 767
consensus_14675#3 TTGTNTTTNCCCNCTCNTGCATT---GCTGCTNAATTCAATNGCAATTCACGAACAAC-C 397
consensus_14675#4 TTGTGTTTCCC-GCTNGTGCATT---GCTGCTAGATGCAATGGCAATGCACGAACAACGC 299
consensus_14675#2 AGATGGCAATGGGCATGGGCCCGAACACCGCTGGTTGCATGATGACTGCTGCCGTGATGG 489
** * * * ** * *
consensus_14675#0 TGTGTGTTGGGTTTGTGTAGCTTG--TACATGTGTGT-ATGTGACCGTACCTAGT-ACGT 935
consensus_14675#5 TGTGTGTTGGGTTTGTGTAGCTTG--TACA----TGT-ATGTGACCGTACCTAGT-ACGT 373
consensus_14675#1 TGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCT-GTATCGACGTTCGTAATCATAT 826
consensus_14675#3 TGTTCATATACTCTCCGTATGTAAACTNCTGTTCTCT-GTATCNACTTTCCTAATCATAT 456
consensus_14675#4 TGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTTGTATCGACGTTCGTAATCATAT 359
consensus_14675#2 TGAAACTGTGCTG-GTGTGGCTGCTGGGATGCGACCGTGTGCGTGAATGCATGATGGTAT 548
** * * ** * * * * * * *
consensus_14675#0 AC-TTTGATCGTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGT 994
consensus_14675#5 AC-TTTGATCGT------------------------------------------------ 384
consensus_14675#1 GT-ATGTACCGTTTGGTTAAAAAAAAGTTCAAATGTTTGCTGCTGTGTAAAAAAAAAAAA 885
consensus_14675#3 NTTNTTTACCGTTTGGGTTTGGT------------------------------------- 479
consensus_14675#4 GT-ATGTACCGTT-GGTTTNGGTTTAGTTCAAATGTTTGCTGCTGTGTGTTTNGGTTCTG 417
consensus_14675#2 GT-----ACCGTTTGGTTTGGTTTTAGTTCAAATGTTTGATGCTGTGTGTTTG-GTTCTG 602
* ***
consensus_14675#0 GCCGTCCTCAATTAATTACTCAAAGTCACCGAAAAAAAAAAAAAAAAA------------ 1042
consensus_14675#5 ------------------------------------------------------------
consensus_14675#1 AAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 945
consensus_14675#3 ------------------------------------------------------------
consensus_14675#4 TTTGAATTCAAGTATAAAATGTGTGCACGGATGAATTGAGAAAAAA-------------- 463
consensus_14675#2 TTTGAATTCAAGTATCAAATGTGTGCACGGATGAATTGAGAAAAAA-------------- 648
consensus_14675#0 ------------------------------------------------------------
consensus_14675#5 ------------------------------------------------------------
consensus_14675#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTACCAAACAAAGGG 1005
consensus_14675#3 ------------------------------------------------------------
consensus_14675#4 ------------------------------------------------------------
consensus_14675#2 ------------------------------------------------------------
consensus_14675#0 --------------------
consensus_14675#5 --------------------
consensus_14675#1 GAAATTTCGGGCCCTAAAAA 1025
consensus_14675#3 --------------------
consensus_14675#4 --------------------
consensus_14675#2 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||