|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 716 fasta sequence
[TCCCGCTAGCCGCCGCCACTCG-CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT-CCAGAGGCCTCTCCCGCCTCCAGGCTCG-CCGGCCGCCCGC-CCGCCTTCGCTGCCGATGGCGGAG-GAAGCCACT---CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA-CCCA-GGTGCTTATCAA-TTGCC-GGAACAACAAGAAGTTGC-TTGGTCGTG-TGAGGGCA-TTTGATCGCCATT-GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT-GGG-GATTCGGTCATCATTG-TGCTCAGGAACCCGAAATGAGTTATAT-GGTCTTGTATCCAG-GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAATCTGTTTCGTGTTGATTTCTCACTTTCTGAATTGCTAAAAGCACTGCAATGTATTGATTGCGC]
[+] EMBL AU092630 [TCCCGCTAGCCGCCGCCACTCG CCGTCGTCGANATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGGCGGAG GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAA ]
[+] EMBL C27708 [ CGCTAGCCGCCGCCACNCG CCGTCGTCGACANCGTCTCCGCTCCTNAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGG TCG CCGNCCGCCCGC CCGCCTTCGCTGCCGATGG GGAG GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTNCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG G ]
[+] EMBL AK121220 [ cCTAGCCGCCGCCACTCG CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGGCGGAG GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCACTGCTTCTGTTTCGTGTTGATTTCTCACTTT ]
[+] EMBL CF333220 [ CTAGCCGCCGCCACTCG CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGGCGGAG GAAGCCACTCAGCAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAGCAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGGNGATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTAT CAGNGGTTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGAC ]
[+] EMBL CF314982 [ cCTAGCCGCCGCCACTCG CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGGCGGAG GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATATGGGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGAC ]
[+] EMBL AU162290 [ ACTCG CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGGCGGAG GAAGCCACTCAGCAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTTGTTATCAATTTGCCGGGAACAACAAGAAGTTTCTTTGGTCGTGTTAAGGGCATTTTAATCG CATTNGCAc ]
[+] EMBL C27943 [ ACTCG CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGG GGAGNGAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGG GATTCGGTCATCATTGTTGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG G ]
[+] EMBL AU161115 [ aatTCGCCCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGATCCCAGAGGCCTCTCCCGCCTCCAGGCTCGCCCGGCCGCCCGCACCGCCTTCGCTGCCGATGNCGGAG GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTNCCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAA ]
[-] EMBL CF314983 [ GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCANNGGGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAA ]
[-] EMBL CF333221 [ GGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACACCCCA GGTGCTTATCAA TTGCC GGAACAGCAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCATTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GGTTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGCCAATTTGGAACTGCAAAAAAaaaaaa ]
[+] EMBL CB097000 [ GGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAGATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGC ]
[+] EMBL AU058316 [ TCAA TTGCC GGAACAACAAGAANTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCNGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGNACTGCAAAAA ]
[+] EMBL AK105062 [ TAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACACCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAAT ]
[+] EMBL CB096347 [ AGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAGCTGCACTGCTTCTGTTTCGTGTTGATTTCTCACTTTCTGAATTGCTAAAAGCACTGCAATGTATTGATTGCGC]
consensusID : consensus_14679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 414 fasta sequence
[TACTTTCGTTCTTCTGAAGTTGCAATGTGGAAGAACTATTTGGAGACCTGAACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGGATTCGGTCATCATTGTGCTCAGGAACCCGA-AATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAAAAAAAAAAAAAAAAAAGAA]
[+] EMBL AU058005 [TACTTTCGTTCTTCTGAAGTTGCAATGTGGAAGAACTATTTGGAGACCTGAACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGGATTCGGTCATCATTGTGCTCAGGAACCCGA AATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAAAAAAAAAAAAAAAAAAGAA]
[+] EMBL CF326860 [ TTCCTACGTGGGGATTCGGTCATCATTGTGCTCAGGAACCCGA AATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAA ]
[-] EMBL CF326861 [ TCCTACGTGGGGATTCGGTCATCATTGTGCTCAGGAACCCGANAATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14679#0 TCCCGCTAGCCGCCGCCACTCGCCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGATC 60
consensus_14679#1 ------------------------------------------------------------
consensus_14679#0 CAGAGGCCTCTCCCGCCTCCAGGCTCGCCGGCCGCCCGCCCGCCTTCGCTGCCGATGGCG 120
consensus_14679#1 ------------------------------------------------------------
consensus_14679#0 GAGGAAGCCACTCAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTG 180
consensus_14679#1 ------------------------------------------------------------
consensus_14679#0 CTGATGATGAGCGTGAAGAACAACACCCAGGTGCTTATCAATTGCCGGAACAACAAGAAG 240
consensus_14679#1 ------------------------------------------------------------
consensus_14679#0 TTGCTTGGTCGTGTGAGGGCATTTGATCGCCATTGCAACATGGTTCTTGAGAATGTTAGG 300
consensus_14679#1 -------------TACTTTCGTTCTTCTGAAGTTGCAATGTGG-----AAGAACTATTTG 42
* * ** * ****** *** **** * *
consensus_14679#0 GAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAAC 360
consensus_14679#1 GAGACCTGAACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAAC 102
**** ** ***************************************************
consensus_14679#0 AAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGGATTCGGTCATCATTGTGCTCAGG 420
consensus_14679#1 AAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGGATTCGGTCATCATTGTGCTCAGG 162
************************************************************
consensus_14679#0 AACCCGAAATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTA 480
consensus_14679#1 AACCCGAAATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTA 222
************************************************************
consensus_14679#0 GTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGT 540
consensus_14679#1 GTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGT 282
************************************************************
consensus_14679#0 GTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGC 600
consensus_14679#1 GTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGC 342
************************************************************
consensus_14679#0 ATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAATCTGTTT 660
consensus_14679#1 ATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAAAAAAAAA 402
*****************************************************
consensus_14679#0 CGTGTTGATTTCTCACTTTCTGAATTGCTAAAAGCACTGCAATGTATTGATTGCGC 716
consensus_14679#1 AAAAAAAAAGAA-------------------------------------------- 414
*
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||