These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2022 fasta sequence [TTTTTTTTTTTTTCTTTTTTTAAGCATTTGTCAAGGGCATTTTGGTTACATAAGGGTAACTTGACAAAAGTACAGTTCAAACTCCAGAGGACAAAAGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA-TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCT-GCCCGTATCCCA-GGATCGCTTCCT-CCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAA-GGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAATGAAAGAGAATTGTCAGGCCATTGAAACATAGGGGTGAACCTTGTGCCTTGTTTGCTCTTGAAGGAGAAGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGC-AA--CCACCAAAGAATGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTTGGGAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTCACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCGGAGCATTTTCATCGCCAGAATTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGTCTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCTTAGCCTTCTTGAAGTTACCAATAGTCCCAATATCGCATCCGAACCCATCATCTTCCTCATCCAAACCACCTTCCGCACCACCAACGCTAGTCGCAGTGGCACTTCCAGTGGCTGCCGCGGCCGCTGCAGCAGCTACCTCGAGAGGCCCTCTGTCTCCGACCCTCTCCGATGCGAGCCCCTTATCCTCAGCTCTCTCCACCGCGAGAGCCACCTCCCCCTCATTCACCGTCGCCGCCGCCGCCGCCGCAGCAGCAGGCTGCGGCGGAATCGCCTCCCACTTCCGGCCCCGCGCGCTCTCCGCCAGGAACGGGACAAGGATCTGCCGCGCCAGCTGCTGCACGGCGCCCCCGACGCACGCCCCGAGCTCGGACCCCGCCTGGCCGAGCCGCCCGCCGATCTCGACGAACGACGCGACGGCCGCGGCGGGGAGGTCGGCGGCGCCCCTCCCGCCCCCGGCCCGCCTCCCTCCGACGACGAAGGGGACGACGGGGAGGTCGATCTCGAAGGGTATCAGCTTGGCCGGCAGCGCGGGGGCGGACCAGTGGAGCTGCGGCGGGTGCGCGTGGAGGAGGAGGCCCGAGAAGCCCTGCGCGAGGCGGTCCGCGAGGTCCTGCCCGTGCCGCTGCACCCCGACCCACGCGTCGAAGGAGATCTCCATGGTTCCACGCCGCGCCGCCGCTAGGGATAGGAGC] [-] EMBL AU056367 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCAANGGCATTTTGGTTACATAAGGGTAACTTGACAAAAGTACAGTTCAAACTCCAGAGGACAAAAGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCNAGGTG TTTGGGATTTTTNTG GGGCTg ] [+] EMBL CB657875 [ TCTTTTTTTAAGCATTTGTCAAGGGCATTTTGGTTACATAAGGGTAACTTGACAAAAGTACAGTTCAAACTCCAGAGGACAAAAGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCT GCCCGTATCCCA GGATCGCTTCCT CCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAA GGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAATGAAAGAGAATTGTCAGGC ] [+] EMBL CB657874 [ tcCTTTTTTTAAGCATTTGTCAAGGGCATTTTGGTTACATCAGGGTAACTTGACAAAAGTACAGTTCAAACTCCAGAGGACAAAAGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCT GCCCGTATCCCA GGATCGCTTCCT CCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAA G ] [+] EMBL CB621512 [ ACAGTTCAAACTCCAGAGGACCCCTGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCT GCCCGTATCCCA GGATCGCTTCCT CCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAA GGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAATGAAAGAGAATTGTCAGGCCATTGAAACATAGGGGTGAACCTTGTGCCTTGTTTGCTCTTGAAGGAGAAGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGC AA CCACCAAAGAA ] [+] EMBL CF311932 [ ttttttGACAAAAGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAGTGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATGCATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTT ] [+] EMBL CB620554 [ AATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATTTTTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCT GCCCGTATCCCA GGATCGCTTCCT CCAAATGTGGGGNAAACACTGACTTGAATGCTGGGCCTCACCATAA GGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAATGAAAGAGAATTGTCAGGCCAT ] [-] EMBL CA766471 [ aAAACTCTGGCCGGTATCCCAGGGATCGCTTCCTCCCAAATGTGGGGCAANCACTGACTTGAATGCTGGGCCTCACCATAAGGGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAAAGAAAGAGAATTGTCAGGCCATTGAAACATAGGGGTGAACCTTGTGCCTTGTTTGCTCTTGGAGGAGAAGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGCAAA CCACCAAAGAATGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTCGGGAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTCACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCGGAGCATTTTCATCGCCAGAATTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGTCTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCCTAGCCTTCTTGAAGTTACCAAGAGTCCCAATATCGCATCCGAACC ] [-] EMBL CF311931 [ TGAAGGAGAAGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGC AAACCCACCAAAGAATGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTTGGGAACTGCACATCCAT AAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTCACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCGGAGCATTTTCATCGCCAGAATTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGTCTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCTTAGCCTTCTTGAAGTTACCAATAGTCCCAATATCGCATCCGAACCC ] [-] EMBL CB001038 [ AGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGCAAA CCACCAAAGAATGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTTGGGAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTCTGACAGATGAATAGGCAAAAGcc ] [-] EMBL AU056366 [ cnCAGGACATTTTCCATGAGCTTGAAGCAAA CCACCAAAGAATGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTTGGGAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTCACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCG ] [-] EMBL CB621511 [ TTGGGAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATGNACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTCACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCGGAGCATTTTCATCGCCAGAATTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGTCTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCTTAGCCTTCTTGAAGTTACCAATAGTCCCAATATCGCATCCGAACCCATCATCTTCCTCATCCAAACCACCTTCCGCACCACCAACGCTAGTCGCAGTGGCACTTCCAGTGGCTGCCGCGGCCGCTGCAGCAGCTACCTCGAGAGGCCCTCTGTCTCCGACCCTCTCCGATGCGAGCCCCTTATCCTCAGCTCTCTCCACCGCGAGAGCCACCTCCCCCTCATTCACCGTCGCCGCCGCCGCCGCCGCAGCAGCAGGCTGCGGCGGAATCGCCTCCCACTTCCGGCCCCGCGCGCTCTCCGCCAGGAACGGGACAAGGATCTGCCGCGCCAGCTGCTGCACGGCGCCCCCGACGCACGCCCCGAGCTCGGACCCCGCCTGGCCGAGCCGCCCGCCGATCTCGACGAACGACGC ] [-] EMBL CB620553 [ TTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGTCTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCTTAGCCTTCTTGAAGTTACCAATAGTCCCAATATCGCATCCGAACCCATCATCTTCCTCATCCAAACCACCTTCCGCACCACCAACGCTAGTCGCAGTGGCACTTCCAGTGGCTGCCGCGGCCGCTGCAGCAGCTACCTCGAGAGGCCCTCTGTCTCCGACCCTCTCCGATGCGAGCCCCTTATCCTCAGCTCTCTCCACCGCGAGAGCCACCTCCCCCTCATTCACCGTCGCCGCCGCCGCCGCCGCAGCAGCAGGCTGCGGCGGAATCGCCTCCCACTTCCGGCCCCGCGCGCTCTCCGCCAGGAACGGGACAAGGATCTGCCGCGCCAGCTGCTGCACGGCGCCCCCGACGCACGCCCCGAGCTCGGACCCCGCCTGGCCGAGCCGCCCGCCGATCTCGACGAACGACGCGACGGCCGCGGCGGGGAGGTCGGCGGCGCCCCTCCCGCCCCCGGCCCGCCTCCCTCCGACGACGAAGGGGACGACGGGGAGGTCGATCTCGAAGGGTATCAGCTTGGCCGGCAGCGCGGGGGCGGACCAGTGGAGCTGCGGCGGGTGCGCGTGGAGGAGGAGGC ] [-] EMBL CB621663 [ CAATAGTCCCAATATCGCATCCGAACCCATCATCTTCCTCATCCAAACCACCTTCCGCACCACCAACGCTAGTCGCAGTGGCACTTCCAGTGGCTGCCGCGGCCGCTGCAGCAGCTACCTCGAGAGGCCCTCTGTCTCCGACCCTCTCCGATGCGAGCCCCTTATCCTCAGCTCTCTCCACCGCGAGAGCCACCTCCCCCTCATTCACCGTCGCCGCCGCCGCCGCCGCAGCAGCAGGCTGCGGCGGAATCGCCTCCCACTTCCGGCCCCGCGCGCTCTCCGCCAGGAACGGGACAAGGATCTGCCGCGCCAGCTGCTGCACGGCGCCCCCGACGCACGCCCCGAGCTCGGACCCCGCCTGGCCGAGCCGCCCGCCGATCTCGACGAACGACGCGACGGCCGCGGCGGGGAGGTCGGCGGCGCCCCTCCCGCCCCCGGCCCGCCTCCCTCCGACGACGAAGGGGACGACGGGGAGGTCGATCTCGAAGGGTATCAGCTTGGCCGGCAGCGCGGGGGCGGACCAGTGGAGCTGCGGCGGGTGCGCGTGGAGGAGGAGGCCCGAGAAGCCCTGCGCGAGGCGGTCCGCGAGGTCCTGCCCGTGCCGCTGCACCCCGACCCACGCGTCGAAGGAGATCTCCATGGTTCCACGCCGCGCCGCCGCTAGGGATAGGAGC] consensusID : consensus_14683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 799 fasta sequence [CTTTTTTTTTGACAACGA-GGGCTACAAT-GTCGACCAGACCCTTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTATTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGATGCATGTAGTTCCATCAAGGAAATCAGAAGTGGAAAATAAATGTGGGACCCAAAAAAATATAGTCGAGTAACCTTGTGCTGGGCCTGACTAACGTGGCTTTGAGTTGCAGAAGTGTTTATATCTAACTACCTGACTTGAATGCTGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCA] [+] EMBL CB621664 [CTTTTTTTTTGACAACGA GGGCTACAAT GTCGACCAGACCCTTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTATTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGATGCATGTAGTTCCATCAAGGAAATCAGAAGTGGAAAATAAATGTGGGACCCAAAAAAATATAGTCGAGTAACCTTGTGCTGGGCCTGACTAACGTGGCTTTGAGTTGCAGAAGTGTTTATATCTAACTACCTGACTTGAATGCTGG ] [+] EMBL CB624319 [ ACAACGAGGGGCTACAATGGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTATTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGATGCATGTAGTTCCATCAAGGAAATCAGAAGTGGAAAATAAATGTGGGACCCAAAAAAATATAGTCGAGTAACCTTGTGCTGGGCCTGACTAACGTGGCTTTGAGTTGCAGAAGTGTTTATATCTAACTACCTGACTTGAATGCTGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCA] consensusID : consensus_14683#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [TTTTTTTTTTGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTGCCTCCTTACCTATTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGAACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATGGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGGGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCNAAAGAAAGAGAATTGTCAGGCCATTGAAACCCCCTTGTCCGTCCTCTGGCTCATAATCA] [+] EMBL CA760000 [TTTTTTTTTTGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTGCCTCCTTACCTATTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGAACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATGGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGGGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCNAAAGAAAGAGAATTGTCAGGCCATTGAAACCCCCTTGTCCGTCCTCTGGCTCATAATCA] consensusID : consensus_14683#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [ACTCTGCACGAGCTCGAGTTTTGTNCCCTTTTTTTAANNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCAACAATGGGNAACAGGGAACCCATTATTATGGTGTGCTACAGCAATTACATACATTCTACTTACAAGCGGATGGACNACAAAATGGGACGCAACATTATTCGCACCTGGCAACAGGCTCCAGCCTACTTACTTCCTTACCTNATTGAATTGCCGACTTTGGGTGGCTGGGNCTAAAACCTATAATANAGGGGGGCCCTATAAGAGGAAATTCNAACCAACGTCCACATAATAACAATTTTTTTTTTTGTTTGGGGCAGCTCTCTCCCNGAAACATNGAAANTTTTTGGACACCGTGCAATTATTATATCAGCGATTATTGTTCTAGCTTACAGGAATNAAACNNTCCTATACTCAAAACCTCCATTCCNAATTGAAACAGGATTNAAGTATGGTCTTANGCCN] [+] EMBL AA752925 [ACTCTGCACGAGCTCGAGTTTTGTNCCCTTTTTTTAANNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCAACAATGGGNAACAGGGAACCCATTATTATGGTGTGCTACAGCAATTACATACATTCTACTTACAAGCGGATGGACNACAAAATGGGACGCAACATTATTCGCACCTGGCAACAGGCTCCAGCCTACTTACTTCCTTACCTNATTGAATTGCCGACTTTGGGTGGCTGGGNCTAAAACCTATAATANAGGGGGGCCCTATAAGAGGAAATTCNAACCAACGTCCACATAATAACAATTTTTTTTTTTGTTTGGGGCAGCTCTCTCCCNGAAACATNGAAANTTTTTGGACACCGTGCAATTATTATATCAGCGATTATTGTTCTAGCTTACAGGAATNAAACNNTCCTATACTCAAAACCTCCATTCCNAATTGAAACAGGATTNAAGTATGGTCTTANGCCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14683#0 TTTTTTTTTTTTTCTTTTTTTAAGCATTTGTCAAGGGCATTTTGGTTACATAAGGGTAAC 60 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 TTGACAAAAGTACAGTTCAAACTCCAGAGGACAAAAGTACAAAATCATTTCCCTCGCAGA 120 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 -----------------------------------------------------------C 1 consensus_14683#3 -------------------------ACTCTGCACGAGCTCGAGTTTTGTNCCCTTTTTTT 35 consensus_14683#0 AAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGG-CAACA 179 consensus_14683#2 ------------------------------------------TTTTTTTTTTGG-CAACA 17 consensus_14683#1 TTTTTTTTTGACAACGAGGGCTACAATGTCGACCAGACCCTTGACCAACAATGG-CAACA 60 consensus_14683#3 AANNTTTTTTTTTTTTT---TTTTTTTTTTTTTTTTTTTTTTGACCAACAATGGGNAACA 92 *** **** consensus_14683#0 GG-AACCCAT-ATTATGGTGTGCTACAGCAAT-ACATACATTCTACTTACAAGCGAT--G 234 consensus_14683#2 GG-AACCCAT-ATTATGGTGTGCTACAGCAAT-ACATACATTCTACTTACAAGCGAT--G 72 consensus_14683#1 GG-AACCCAT-ATTATGGTGTGCTACAGCAAT-ACATACATTCTACTTACAAGCGAT--G 115 consensus_14683#3 GGGAACCCATTATTATGGTGTGCTACAGCAATTACATACATTCTACTTACAAGCGGATGG 152 ** ******* ********************* ********************** * consensus_14683#0 ACGACAAAATGG-ACGCAACAT-ATTCGCACCTG-CAACAG-CTCCAGC-TACTTACTTC 289 consensus_14683#2 ACGACAAAATGG-ACGCAACAT-ATTCGCACCTG-CAACAG-CTCCAGC-TACTTGCCTC 127 consensus_14683#1 ACGACAAAATGG-ACGCAACAT-ATTCGCACCTG-CAACAG-CTCCAGC-TACTTACTTC 170 consensus_14683#3 ACNACAAAATGGGACGCAACATTATTCGCACCTGGCAACAGGCTCCAGCCTACTTACTTC 212 ** ********* ********* *********** ****** ******* ***** * ** consensus_14683#0 CTTACCTA-TTGAATTGC-GACTTTGGT--GCTGGGC-TAAAACCTATAATAA---GGGG 341 consensus_14683#2 CTTACCTA-TTGAATTGC-GACTTTGGT--GCTGGGC-TAAAACCTATAATAA---GGGG 179 consensus_14683#1 CTTACCTA-TTGAATTGC-GACTTTGGT--GCTGGGC-TAAAACCTATAATAA---GGGG 222 consensus_14683#3 CTTACCTNATTGAATTGCCGACTTTGGGTGGCTGGGNCTAAAACCTATAATANAGGGGGG 272 ******* ********* ******** ****** ************** **** consensus_14683#0 CACTAAAAGGAGA---TTCAACCAACGTCCACATAATA-CAATTTATAGGTT-------G 390 consensus_14683#2 AACTAAAAGGAGA---TTCAACCAACGTCCACATAATA-CAATTTATGGGTT-------G 228 consensus_14683#1 CACTAAAAGGAGA---TTCAACCAACGTCCACATAATA-CAATTTATAGGTT-------G 271 consensus_14683#3 CCCTATAAGAGGAAATTCNAACCAACGTCCACATAATAACAATTTTTTTTTTTGTTTGGG 332 *** *** ** * ******************* ****** * ** * consensus_14683#0 GCAGCTCTCTCC-AGAAACATGAAAGTAT---GGACACCGTGCAATA--TATA-CAGCGA 443 consensus_14683#2 GCAGCTCTCTCC-AGAAACATGAAAGTAT---GGACACCGTGCAATA--TATA-CAGCGA 281 consensus_14683#1 GCAGCTCTCTCC-AGAAACATGAAAGTAT---GGACACCGTGCAATA--TATA-CAGCGA 324 consensus_14683#3 GCAGCTCTCTCCCNGAAACATNGAAANTTTTTGGACACCGTGCAATTATTATATCAGCGA 392 ************ ******* ** * ************** **** ****** consensus_14683#0 TA--TGTAC-AGCTTACAGGAATAGA--CGTCATA-ACTCAAAACCTCCATTCAATTGAA 497 consensus_14683#2 TA--TGTAC-AGCTTACAGGAATAGA--CGTCATA-ACTCAAAACCTCCATTCAATTGAA 335 consensus_14683#1 TA--TGTAC-AGCTTACAGGAATAGA--CGTCATA-ACTCAAAACCTCCATTCAATTGAA 378 consensus_14683#3 TTATTGTTCTAGCTTACAGGAATNAAACNNTCCTATACTCAAAACCTCCATTC---CNAA 449 * *** * ************* * ** ** ***************** ** consensus_14683#0 CAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTG 557 consensus_14683#2 CAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTG 395 consensus_14683#1 CAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTG 438 consensus_14683#3 TTGA--AACAGGATTNAAGTATGGTCTTANGCCN-------------------------- 481 ** ** * * * * * * * * ** consensus_14683#0 AACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGG 617 consensus_14683#2 AACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGG 455 consensus_14683#1 AACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGG 498 consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 GATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAA 677 consensus_14683#2 GATGTCTGGCACAAGGGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAA 515 consensus_14683#1 GATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAA 558 consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 ACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGACTTGAATGC 737 consensus_14683#2 ACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGACTTGAATGC 575 consensus_14683#1 ACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGA--TGCATG- 615 consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 TGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAATGAAA 797 consensus_14683#2 TGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCNAAAGAAA 635 consensus_14683#1 TAGTTCCATCAAGGAAATCAGAAGTG------GAAAATAAATGTGGGACCC-----AAAA 664 consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 GAGAATTGTCAGGCCATTGAAACATAGGGGTGAACCTTGTGCCTTGTTTGCTCTTGAAGG 857 consensus_14683#2 GAGAATTGTCAGGCCATTGAAACCCCCTTGTCCGTCCTCTGGCTCATAATCA-------- 687 consensus_14683#1 AAATATAGTCGAGTAACCTTGTGCTGGGCCTGACTAACGTGGCTT-TGAGTTGCAGAAGT 723 consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 AGAAGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGCAACCACCAAAGAA 917 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 GTTTATATCTAACTACCTGACTTGAATGCTGGGCCTCACCATAAGGCCAGATCTTTTCCA 783 consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 TGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTTGG 977 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 CGCTAAGGCTTGTGCA-------------------------------------------- 799 consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 GAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCAT 1037 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 CCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATC 1097 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 ATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTC 1157 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 ACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCGGAGCATTTTCATCGCCAGA 1217 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 ATTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGT 1277 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 CTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCTTAGCCTT 1337 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 CTTGAAGTTACCAATAGTCCCAATATCGCATCCGAACCCATCATCTTCCTCATCCAAACC 1397 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 ACCTTCCGCACCACCAACGCTAGTCGCAGTGGCACTTCCAGTGGCTGCCGCGGCCGCTGC 1457 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 AGCAGCTACCTCGAGAGGCCCTCTGTCTCCGACCCTCTCCGATGCGAGCCCCTTATCCTC 1517 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 AGCTCTCTCCACCGCGAGAGCCACCTCCCCCTCATTCACCGTCGCCGCCGCCGCCGCCGC 1577 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 AGCAGCAGGCTGCGGCGGAATCGCCTCCCACTTCCGGCCCCGCGCGCTCTCCGCCAGGAA 1637 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 CGGGACAAGGATCTGCCGCGCCAGCTGCTGCACGGCGCCCCCGACGCACGCCCCGAGCTC 1697 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 GGACCCCGCCTGGCCGAGCCGCCCGCCGATCTCGACGAACGACGCGACGGCCGCGGCGGG 1757 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 GAGGTCGGCGGCGCCCCTCCCGCCCCCGGCCCGCCTCCCTCCGACGACGAAGGGGACGAC 1817 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 GGGGAGGTCGATCTCGAAGGGTATCAGCTTGGCCGGCAGCGCGGGGGCGGACCAGTGGAG 1877 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 CTGCGGCGGGTGCGCGTGGAGGAGGAGGCCCGAGAAGCCCTGCGCGAGGCGGTCCGCGAG 1937 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 GTCCTGCCCGTGCCGCTGCACCCCGACCCACGCGTCGAAGGAGATCTCCATGGTTCCACG 1997 consensus_14683#2 ------------------------------------------------------------ consensus_14683#1 ------------------------------------------------------------ consensus_14683#3 ------------------------------------------------------------ consensus_14683#0 CCGCGCCGCCGCTAGGGATAGGAGC 2022 consensus_14683#2 ------------------------- consensus_14683#1 ------------------------- consensus_14683#3 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||