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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2022 fasta sequence
[TTTTTTTTTTTTTCTTTTTTTAAGCATTTGTCAAGGGCATTTTGGTTACATAAGGGTAACTTGACAAAAGTACAGTTCAAACTCCAGAGGACAAAAGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA-TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCT-GCCCGTATCCCA-GGATCGCTTCCT-CCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAA-GGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAATGAAAGAGAATTGTCAGGCCATTGAAACATAGGGGTGAACCTTGTGCCTTGTTTGCTCTTGAAGGAGAAGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGC-AA--CCACCAAAGAATGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTTGGGAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTCACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCGGAGCATTTTCATCGCCAGAATTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGTCTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCTTAGCCTTCTTGAAGTTACCAATAGTCCCAATATCGCATCCGAACCCATCATCTTCCTCATCCAAACCACCTTCCGCACCACCAACGCTAGTCGCAGTGGCACTTCCAGTGGCTGCCGCGGCCGCTGCAGCAGCTACCTCGAGAGGCCCTCTGTCTCCGACCCTCTCCGATGCGAGCCCCTTATCCTCAGCTCTCTCCACCGCGAGAGCCACCTCCCCCTCATTCACCGTCGCCGCCGCCGCCGCCGCAGCAGCAGGCTGCGGCGGAATCGCCTCCCACTTCCGGCCCCGCGCGCTCTCCGCCAGGAACGGGACAAGGATCTGCCGCGCCAGCTGCTGCACGGCGCCCCCGACGCACGCCCCGAGCTCGGACCCCGCCTGGCCGAGCCGCCCGCCGATCTCGACGAACGACGCGACGGCCGCGGCGGGGAGGTCGGCGGCGCCCCTCCCGCCCCCGGCCCGCCTCCCTCCGACGACGAAGGGGACGACGGGGAGGTCGATCTCGAAGGGTATCAGCTTGGCCGGCAGCGCGGGGGCGGACCAGTGGAGCTGCGGCGGGTGCGCGTGGAGGAGGAGGCCCGAGAAGCCCTGCGCGAGGCGGTCCGCGAGGTCCTGCCCGTGCCGCTGCACCCCGACCCACGCGTCGAAGGAGATCTCCATGGTTCCACGCCGCGCCGCCGCTAGGGATAGGAGC]
[-] EMBL AU056367 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCAANGGCATTTTGGTTACATAAGGGTAACTTGACAAAAGTACAGTTCAAACTCCAGAGGACAAAAGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCNAGGTG TTTGGGATTTTTNTG GGGCTg ]
[+] EMBL CB657875 [ TCTTTTTTTAAGCATTTGTCAAGGGCATTTTGGTTACATAAGGGTAACTTGACAAAAGTACAGTTCAAACTCCAGAGGACAAAAGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCT GCCCGTATCCCA GGATCGCTTCCT CCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAA GGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAATGAAAGAGAATTGTCAGGC ]
[+] EMBL CB657874 [ tcCTTTTTTTAAGCATTTGTCAAGGGCATTTTGGTTACATCAGGGTAACTTGACAAAAGTACAGTTCAAACTCCAGAGGACAAAAGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCT GCCCGTATCCCA GGATCGCTTCCT CCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAA G ]
[+] EMBL CB621512 [ ACAGTTCAAACTCCAGAGGACCCCTGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCT GCCCGTATCCCA GGATCGCTTCCT CCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAA GGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAATGAAAGAGAATTGTCAGGCCATTGAAACATAGGGGTGAACCTTGTGCCTTGTTTGCTCTTGAAGGAGAAGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGC AA CCACCAAAGAA ]
[+] EMBL CF311932 [ ttttttGACAAAAGTACAAAATCATTTCCCTCGCAGAAAACAGTGTGACAACGAGGGCTACAGTGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATGCATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTT ]
[+] EMBL CB620554 [ AATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTA TTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATTTTTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCT GCCCGTATCCCA GGATCGCTTCCT CCAAATGTGGGGNAAACACTGACTTGAATGCTGGGCCTCACCATAA GGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAATGAAAGAGAATTGTCAGGCCAT ]
[-] EMBL CA766471 [ aAAACTCTGGCCGGTATCCCAGGGATCGCTTCCTCCCAAATGTGGGGCAANCACTGACTTGAATGCTGGGCCTCACCATAAGGGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAAAGAAAGAGAATTGTCAGGCCATTGAAACATAGGGGTGAACCTTGTGCCTTGTTTGCTCTTGGAGGAGAAGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGCAAA CCACCAAAGAATGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTCGGGAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTCACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCGGAGCATTTTCATCGCCAGAATTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGTCTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCCTAGCCTTCTTGAAGTTACCAAGAGTCCCAATATCGCATCCGAACC ]
[-] EMBL CF311931 [ TGAAGGAGAAGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGC AAACCCACCAAAGAATGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTTGGGAACTGCACATCCAT AAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTCACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCGGAGCATTTTCATCGCCAGAATTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGTCTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCTTAGCCTTCTTGAAGTTACCAATAGTCCCAATATCGCATCCGAACCC ]
[-] EMBL CB001038 [ AGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGCAAA CCACCAAAGAATGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTTGGGAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTCTGACAGATGAATAGGCAAAAGcc ]
[-] EMBL AU056366 [ cnCAGGACATTTTCCATGAGCTTGAAGCAAA CCACCAAAGAATGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTTGGGAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTCACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCG ]
[-] EMBL CB621511 [ TTGGGAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATGNACATCACCATCCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATCATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTCACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCGGAGCATTTTCATCGCCAGAATTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGTCTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCTTAGCCTTCTTGAAGTTACCAATAGTCCCAATATCGCATCCGAACCCATCATCTTCCTCATCCAAACCACCTTCCGCACCACCAACGCTAGTCGCAGTGGCACTTCCAGTGGCTGCCGCGGCCGCTGCAGCAGCTACCTCGAGAGGCCCTCTGTCTCCGACCCTCTCCGATGCGAGCCCCTTATCCTCAGCTCTCTCCACCGCGAGAGCCACCTCCCCCTCATTCACCGTCGCCGCCGCCGCCGCCGCAGCAGCAGGCTGCGGCGGAATCGCCTCCCACTTCCGGCCCCGCGCGCTCTCCGCCAGGAACGGGACAAGGATCTGCCGCGCCAGCTGCTGCACGGCGCCCCCGACGCACGCCCCGAGCTCGGACCCCGCCTGGCCGAGCCGCCCGCCGATCTCGACGAACGACGC ]
[-] EMBL CB620553 [ TTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGTCTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCTTAGCCTTCTTGAAGTTACCAATAGTCCCAATATCGCATCCGAACCCATCATCTTCCTCATCCAAACCACCTTCCGCACCACCAACGCTAGTCGCAGTGGCACTTCCAGTGGCTGCCGCGGCCGCTGCAGCAGCTACCTCGAGAGGCCCTCTGTCTCCGACCCTCTCCGATGCGAGCCCCTTATCCTCAGCTCTCTCCACCGCGAGAGCCACCTCCCCCTCATTCACCGTCGCCGCCGCCGCCGCCGCAGCAGCAGGCTGCGGCGGAATCGCCTCCCACTTCCGGCCCCGCGCGCTCTCCGCCAGGAACGGGACAAGGATCTGCCGCGCCAGCTGCTGCACGGCGCCCCCGACGCACGCCCCGAGCTCGGACCCCGCCTGGCCGAGCCGCCCGCCGATCTCGACGAACGACGCGACGGCCGCGGCGGGGAGGTCGGCGGCGCCCCTCCCGCCCCCGGCCCGCCTCCCTCCGACGACGAAGGGGACGACGGGGAGGTCGATCTCGAAGGGTATCAGCTTGGCCGGCAGCGCGGGGGCGGACCAGTGGAGCTGCGGCGGGTGCGCGTGGAGGAGGAGGC ]
[-] EMBL CB621663 [ CAATAGTCCCAATATCGCATCCGAACCCATCATCTTCCTCATCCAAACCACCTTCCGCACCACCAACGCTAGTCGCAGTGGCACTTCCAGTGGCTGCCGCGGCCGCTGCAGCAGCTACCTCGAGAGGCCCTCTGTCTCCGACCCTCTCCGATGCGAGCCCCTTATCCTCAGCTCTCTCCACCGCGAGAGCCACCTCCCCCTCATTCACCGTCGCCGCCGCCGCCGCCGCAGCAGCAGGCTGCGGCGGAATCGCCTCCCACTTCCGGCCCCGCGCGCTCTCCGCCAGGAACGGGACAAGGATCTGCCGCGCCAGCTGCTGCACGGCGCCCCCGACGCACGCCCCGAGCTCGGACCCCGCCTGGCCGAGCCGCCCGCCGATCTCGACGAACGACGCGACGGCCGCGGCGGGGAGGTCGGCGGCGCCCCTCCCGCCCCCGGCCCGCCTCCCTCCGACGACGAAGGGGACGACGGGGAGGTCGATCTCGAAGGGTATCAGCTTGGCCGGCAGCGCGGGGGCGGACCAGTGGAGCTGCGGCGGGTGCGCGTGGAGGAGGAGGCCCGAGAAGCCCTGCGCGAGGCGGTCCGCGAGGTCCTGCCCGTGCCGCTGCACCCCGACCCACGCGTCGAAGGAGATCTCCATGGTTCCACGCCGCGCCGCCGCTAGGGATAGGAGC]
consensusID : consensus_14683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 799 fasta sequence
[CTTTTTTTTTGACAACGA-GGGCTACAAT-GTCGACCAGACCCTTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTATTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGATGCATGTAGTTCCATCAAGGAAATCAGAAGTGGAAAATAAATGTGGGACCCAAAAAAATATAGTCGAGTAACCTTGTGCTGGGCCTGACTAACGTGGCTTTGAGTTGCAGAAGTGTTTATATCTAACTACCTGACTTGAATGCTGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCA]
[+] EMBL CB621664 [CTTTTTTTTTGACAACGA GGGCTACAAT GTCGACCAGACCCTTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTATTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGATGCATGTAGTTCCATCAAGGAAATCAGAAGTGGAAAATAAATGTGGGACCCAAAAAAATATAGTCGAGTAACCTTGTGCTGGGCCTGACTAACGTGGCTTTGAGTTGCAGAAGTGTTTATATCTAACTACCTGACTTGAATGCTGG ]
[+] EMBL CB624319 [ ACAACGAGGGGCTACAATGGTCGACCAGACCATTGACCAACAATGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTACTTCCTTACCTATTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGCACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATAGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGATGCATGTAGTTCCATCAAGGAAATCAGAAGTGGAAAATAAATGTGGGACCCAAAAAAATATAGTCGAGTAACCTTGTGCTGGGCCTGACTAACGTGGCTTTGAGTTGCAGAAGTGTTTATATCTAACTACCTGACTTGAATGCTGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCA]
consensusID : consensus_14683#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[TTTTTTTTTTGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTGCCTCCTTACCTATTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGAACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATGGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGGGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCNAAAGAAAGAGAATTGTCAGGCCATTGAAACCCCCTTGTCCGTCCTCTGGCTCATAATCA]
[+] EMBL CA760000 [TTTTTTTTTTGGCAACAGGAACCCATATTATGGTGTGCTACAGCAATACATACATTCTACTTACAAGCGATGACGACAAAATGGACGCAACATATTCGCACCTGCAACAGCTCCAGCTACTTGCCTCCTTACCTATTGAATTGCGACTTTGGTGCTGGGCTAAAACCTATAATAAGGGGAACTAAAAGGAGATTCAACCAACGTCCACATAATACAATTTATGGGTTGGCAGCTCTCTCCAGAAACATGAAAGTATGGACACCGTGCAATATATACAGCGATATGTACAGCTTACAGGAATAGACGTCATAACTCAAAACCTCCATTCAATTGAACAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTGAACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGGGATGTCTGGCACAAGGGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAAACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGACTTGAATGCTGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCNAAAGAAAGAGAATTGTCAGGCCATTGAAACCCCCTTGTCCGTCCTCTGGCTCATAATCA]
consensusID : consensus_14683#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[ACTCTGCACGAGCTCGAGTTTTGTNCCCTTTTTTTAANNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCAACAATGGGNAACAGGGAACCCATTATTATGGTGTGCTACAGCAATTACATACATTCTACTTACAAGCGGATGGACNACAAAATGGGACGCAACATTATTCGCACCTGGCAACAGGCTCCAGCCTACTTACTTCCTTACCTNATTGAATTGCCGACTTTGGGTGGCTGGGNCTAAAACCTATAATANAGGGGGGCCCTATAAGAGGAAATTCNAACCAACGTCCACATAATAACAATTTTTTTTTTTGTTTGGGGCAGCTCTCTCCCNGAAACATNGAAANTTTTTGGACACCGTGCAATTATTATATCAGCGATTATTGTTCTAGCTTACAGGAATNAAACNNTCCTATACTCAAAACCTCCATTCCNAATTGAAACAGGATTNAAGTATGGTCTTANGCCN]
[+] EMBL AA752925 [ACTCTGCACGAGCTCGAGTTTTGTNCCCTTTTTTTAANNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCAACAATGGGNAACAGGGAACCCATTATTATGGTGTGCTACAGCAATTACATACATTCTACTTACAAGCGGATGGACNACAAAATGGGACGCAACATTATTCGCACCTGGCAACAGGCTCCAGCCTACTTACTTCCTTACCTNATTGAATTGCCGACTTTGGGTGGCTGGGNCTAAAACCTATAATANAGGGGGGCCCTATAAGAGGAAATTCNAACCAACGTCCACATAATAACAATTTTTTTTTTTGTTTGGGGCAGCTCTCTCCCNGAAACATNGAAANTTTTTGGACACCGTGCAATTATTATATCAGCGATTATTGTTCTAGCTTACAGGAATNAAACNNTCCTATACTCAAAACCTCCATTCCNAATTGAAACAGGATTNAAGTATGGTCTTANGCCN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14683#0 TTTTTTTTTTTTTCTTTTTTTAAGCATTTGTCAAGGGCATTTTGGTTACATAAGGGTAAC 60
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 TTGACAAAAGTACAGTTCAAACTCCAGAGGACAAAAGTACAAAATCATTTCCCTCGCAGA 120
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 -----------------------------------------------------------C 1
consensus_14683#3 -------------------------ACTCTGCACGAGCTCGAGTTTTGTNCCCTTTTTTT 35
consensus_14683#0 AAACAGTGTGACAACGAGGGCTACAATGTCGACCAGACCATTGACCAACAATGG-CAACA 179
consensus_14683#2 ------------------------------------------TTTTTTTTTTGG-CAACA 17
consensus_14683#1 TTTTTTTTTGACAACGAGGGCTACAATGTCGACCAGACCCTTGACCAACAATGG-CAACA 60
consensus_14683#3 AANNTTTTTTTTTTTTT---TTTTTTTTTTTTTTTTTTTTTTGACCAACAATGGGNAACA 92
*** ****
consensus_14683#0 GG-AACCCAT-ATTATGGTGTGCTACAGCAAT-ACATACATTCTACTTACAAGCGAT--G 234
consensus_14683#2 GG-AACCCAT-ATTATGGTGTGCTACAGCAAT-ACATACATTCTACTTACAAGCGAT--G 72
consensus_14683#1 GG-AACCCAT-ATTATGGTGTGCTACAGCAAT-ACATACATTCTACTTACAAGCGAT--G 115
consensus_14683#3 GGGAACCCATTATTATGGTGTGCTACAGCAATTACATACATTCTACTTACAAGCGGATGG 152
** ******* ********************* ********************** *
consensus_14683#0 ACGACAAAATGG-ACGCAACAT-ATTCGCACCTG-CAACAG-CTCCAGC-TACTTACTTC 289
consensus_14683#2 ACGACAAAATGG-ACGCAACAT-ATTCGCACCTG-CAACAG-CTCCAGC-TACTTGCCTC 127
consensus_14683#1 ACGACAAAATGG-ACGCAACAT-ATTCGCACCTG-CAACAG-CTCCAGC-TACTTACTTC 170
consensus_14683#3 ACNACAAAATGGGACGCAACATTATTCGCACCTGGCAACAGGCTCCAGCCTACTTACTTC 212
** ********* ********* *********** ****** ******* ***** * **
consensus_14683#0 CTTACCTA-TTGAATTGC-GACTTTGGT--GCTGGGC-TAAAACCTATAATAA---GGGG 341
consensus_14683#2 CTTACCTA-TTGAATTGC-GACTTTGGT--GCTGGGC-TAAAACCTATAATAA---GGGG 179
consensus_14683#1 CTTACCTA-TTGAATTGC-GACTTTGGT--GCTGGGC-TAAAACCTATAATAA---GGGG 222
consensus_14683#3 CTTACCTNATTGAATTGCCGACTTTGGGTGGCTGGGNCTAAAACCTATAATANAGGGGGG 272
******* ********* ******** ****** ************** ****
consensus_14683#0 CACTAAAAGGAGA---TTCAACCAACGTCCACATAATA-CAATTTATAGGTT-------G 390
consensus_14683#2 AACTAAAAGGAGA---TTCAACCAACGTCCACATAATA-CAATTTATGGGTT-------G 228
consensus_14683#1 CACTAAAAGGAGA---TTCAACCAACGTCCACATAATA-CAATTTATAGGTT-------G 271
consensus_14683#3 CCCTATAAGAGGAAATTCNAACCAACGTCCACATAATAACAATTTTTTTTTTTGTTTGGG 332
*** *** ** * ******************* ****** * ** *
consensus_14683#0 GCAGCTCTCTCC-AGAAACATGAAAGTAT---GGACACCGTGCAATA--TATA-CAGCGA 443
consensus_14683#2 GCAGCTCTCTCC-AGAAACATGAAAGTAT---GGACACCGTGCAATA--TATA-CAGCGA 281
consensus_14683#1 GCAGCTCTCTCC-AGAAACATGAAAGTAT---GGACACCGTGCAATA--TATA-CAGCGA 324
consensus_14683#3 GCAGCTCTCTCCCNGAAACATNGAAANTTTTTGGACACCGTGCAATTATTATATCAGCGA 392
************ ******* ** * ************** **** ******
consensus_14683#0 TA--TGTAC-AGCTTACAGGAATAGA--CGTCATA-ACTCAAAACCTCCATTCAATTGAA 497
consensus_14683#2 TA--TGTAC-AGCTTACAGGAATAGA--CGTCATA-ACTCAAAACCTCCATTCAATTGAA 335
consensus_14683#1 TA--TGTAC-AGCTTACAGGAATAGA--CGTCATA-ACTCAAAACCTCCATTCAATTGAA 378
consensus_14683#3 TTATTGTTCTAGCTTACAGGAATNAAACNNTCCTATACTCAAAACCTCCATTC---CNAA 449
* *** * ************* * ** ** ***************** **
consensus_14683#0 CAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTG 557
consensus_14683#2 CAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTG 395
consensus_14683#1 CAGATAAAGATGGTCTAGCCAAGTTGTCCAGCGGTGTTTCCAAGGTGATTACTAGTCCTG 438
consensus_14683#3 TTGA--AACAGGATTNAAGTATGGTCTTANGCCN-------------------------- 481
** ** * * * * * * * * **
consensus_14683#0 AACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGG 617
consensus_14683#2 AACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGG 455
consensus_14683#1 AACTGCCGACTTGTCCATTCCACTTGGATCGCCCGAGAGAAACAGCTGTGAAGGCCGAGG 498
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 GATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAA 677
consensus_14683#2 GATGTCTGGCACAAGGGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAA 515
consensus_14683#1 GATGTCTGGCACAAGAGAAACCACACATTACATTGAGTTCCTCCTTCAATGAATGGACAA 558
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 ACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGACTTGAATGC 737
consensus_14683#2 ACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGACTTGAATGC 575
consensus_14683#1 ACTCTGCCCGTATCCCAGGATCGCTTCCTCCAAATGTGGGGCAAACACTGA--TGCATG- 615
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 TGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCAAATGAAA 797
consensus_14683#2 TGGGCCTCACCATAAGGCCAGATCTTTTCCACGCTAAGGCTTGTGCAACTCCNAAAGAAA 635
consensus_14683#1 TAGTTCCATCAAGGAAATCAGAAGTG------GAAAATAAATGTGGGACCC-----AAAA 664
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 GAGAATTGTCAGGCCATTGAAACATAGGGGTGAACCTTGTGCCTTGTTTGCTCTTGAAGG 857
consensus_14683#2 GAGAATTGTCAGGCCATTGAAACCCCCTTGTCCGTCCTCTGGCTCATAATCA-------- 687
consensus_14683#1 AAATATAGTCGAGTAACCTTGTGCTGGGCCTGACTAACGTGGCTT-TGAGTTGCAGAAGT 723
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 AGAAGCTTAATCTTGTTTCCCCAGGACATTTTCCATGAGCTTGAAGCAACCACCAAAGAA 917
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 GTTTATATCTAACTACCTGACTTGAATGCTGGGCCTCACCATAAGGCCAGATCTTTTCCA 783
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 TGGGAAAAATCCACTTGCTGTTATCCCTTCTCCAGCAACGTATGTTAGCTGTCCATTTGG 977
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 CGCTAAGGCTTGTGCA-------------------------------------------- 799
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 GAACTGCACATCCATGAAAGAACAGGTTACAGGATTGAGGCACATCATTGACATCACCAT 1037
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 CCATCTTCTATGTTTTGACCAGATAGCTGGACATAAGGAGTGCATTTTGTTCTTGCGATC 1097
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 ATAGCCATACCAAAGAAGGTGCTGCTTTGACAGATGAATAGGCAAAAGAAGTGTAGAGTC 1157
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 ACGAACAAATAATAAAGGTCCCAGCTGAACAAGGAAAAGCGGAGCATTTTCATCGCCAGA 1217
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 ATTTGAACCACCACGCGACGACTCCAACCTCCAAAGGTCCCCACGTGCAACAACTGAAGT 1277
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 CTCAAAGTCATGGTGCCTGGTCTCGTATGTTGCTGAGATATTTATGGTTCCCTTAGCCTT 1337
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 CTTGAAGTTACCAATAGTCCCAATATCGCATCCGAACCCATCATCTTCCTCATCCAAACC 1397
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 ACCTTCCGCACCACCAACGCTAGTCGCAGTGGCACTTCCAGTGGCTGCCGCGGCCGCTGC 1457
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 AGCAGCTACCTCGAGAGGCCCTCTGTCTCCGACCCTCTCCGATGCGAGCCCCTTATCCTC 1517
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 AGCTCTCTCCACCGCGAGAGCCACCTCCCCCTCATTCACCGTCGCCGCCGCCGCCGCCGC 1577
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 AGCAGCAGGCTGCGGCGGAATCGCCTCCCACTTCCGGCCCCGCGCGCTCTCCGCCAGGAA 1637
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 CGGGACAAGGATCTGCCGCGCCAGCTGCTGCACGGCGCCCCCGACGCACGCCCCGAGCTC 1697
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 GGACCCCGCCTGGCCGAGCCGCCCGCCGATCTCGACGAACGACGCGACGGCCGCGGCGGG 1757
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 GAGGTCGGCGGCGCCCCTCCCGCCCCCGGCCCGCCTCCCTCCGACGACGAAGGGGACGAC 1817
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 GGGGAGGTCGATCTCGAAGGGTATCAGCTTGGCCGGCAGCGCGGGGGCGGACCAGTGGAG 1877
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 CTGCGGCGGGTGCGCGTGGAGGAGGAGGCCCGAGAAGCCCTGCGCGAGGCGGTCCGCGAG 1937
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 GTCCTGCCCGTGCCGCTGCACCCCGACCCACGCGTCGAAGGAGATCTCCATGGTTCCACG 1997
consensus_14683#2 ------------------------------------------------------------
consensus_14683#1 ------------------------------------------------------------
consensus_14683#3 ------------------------------------------------------------
consensus_14683#0 CCGCGCCGCCGCTAGGGATAGGAGC 2022
consensus_14683#2 -------------------------
consensus_14683#1 -------------------------
consensus_14683#3 -------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||