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Oryza sativa
cluster # 14685 cluster # 14685       Sequences # 17       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14685#0 length = 1053 sequences # 14  
consensus_14685#1 length = 660 sequences # 1  
consensus_14685#2 length = 427 sequences # 1  
consensus_14685#3 length = 345 sequences # 1  

consensusID : consensus_14685#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1053
fasta sequence
                              [CATGGACTAAGGAGTAGAAAAGAGCCAGCCGAGCCAGCGCGGCGCGGTCGCCTTTGCCCTGCCCTGCACTGACCGTTGGAGAGCCAAGCAACCCAACCCAAGCGCTCTTCTCTTCTCCTCCTCTTCCTCCCAAATCGATCGGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGGACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGCTGTGGTTACTGTGGCTATGCATTGAACCTGAGCTCCTCAACACGGAACACAGCGAACATTGGATCCAAGTATGGTAAGCAGATCAGGAAAGGTGTAATCTCATTCTTTGCGATCGACGAGAGTCGGT-TCACACAAACTGA-TGAGGTGAGCTGCA-TGCCAT-ACTTCC-A-TTCAAGGCG-C-T-CCT-GGGGTTTGTT-CAG-AAAGAGGACAAGGTTGAT-CTGCCGCAAATGTGGTGGCCGTATCGGTAATGCTTATGAGGATGAGGATT-CCA-CATTGTATGATGGTTCAGATGATTTGCACATGAG-CTCCGAGGGC-TACAGCATGT-CGAGT-GGAAAGAAATATGTTA-TCAAGATTAATGCACTGCAG-CCTTCAACCGATG-ACTCTGG-TGTTCCCTTCA-CCCTGTGATGCTGTTCTGAACTT-CTG--CAGTA-T-GCACTTTT-CGATTCTTG-CCTTG-CGCT-ATACTGGACTGT-CAATCAAGT-AACTGCAGAA-CCAAGAGATTACGTGCTAGTGTGTAACTGTATATTTTGATAGGAATG-CTGAATTTTG-CCTACCTGTATTTATAAAATGGAAGAGTTTGTTGTCTATTTACATATACATTCAGAGTTCAGTG-G-GTGTGCAACTGTGCATCATGGACCTGGATTTGGCAATCCATATTTGGGCAAATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATTCTAAACGGCAGTTTTTTTTTAAAAAAGTTTAAAAAAAAAAAAAAA]

[+] EMBL CF314590             [CATGGACTAAGGAGTAGAAAAGAGCCAGCCGAGCCAGCGCGGCGCGGTCGCCTTTGCCCTGCCCTGCACTGACCGTTGGAGAGCCAAGCAACCCAACCCAAGCGCTCTTCTCTTCTCCTCCTCTTCCTCCCAAATCGATCGGGATCCGATGCGCACGGAGGAGGAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF312769             [                            CCGAGCCAGCGCGGCGCGGTCGCCTTTGCCCTGCCCTGCACTGACCGTTGGAGAGCCAAGCAACCCAACCCAAGCGCTCTTCTCTTCTCCTCCTCTTCCTCCCAAATCGATCGGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGGACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGCTGTGGTTACTGTGGCTATGCATTGAACGTGAGCTCCTCAACACGGAACACGGCGAACATTGGATCCAAGTATGGTAAGCAGATCAGGAAAGGTGTAATCTCATTCTTTGCGATCGACGAGAGTCGGT TCACACAAACTGA TGAGGTGAGCTGCA TGCCAT ACTTCC A TTCAAGGCG C T CCT GGGGTTTGTT CAG AAAGAGGACAAGGTTGAT CTGCCGCAAATGTGGTGGCCGTATCGGTAATGCTTATGAGGATGAGGATT CCA CATTGTATGATGGTTCAGATGATTTGCACATGAG CTCCGAGGGC TACAGCATGT CGAGT GGAAAGAAATATGTTA TCAAGATTAATGCACTGCAG CCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF278154             [                            CCGAGCCAGCGCGGCGCGGTCGCCTTTGCCCTGCCCTGCACTGACCGTTGGAGAGCCAAGCAACCCAACCCAAGCGCTCTTCTCTTCTCCTCCTCTTCCTCCCAAATCGATCGGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGGACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGCTGTGGTTACTGTGGCTATGCATTGAACCTGAGCTCCTCAACACGGAACACAGCGAACATTGGATCCAAGTATGGTAAGCAGATCAGGAAAGGTGTAATCTCATTCTTTGCGATCGACGAGAGTCGGT TCACACAAACTGA TGAGGTGAGCTGCA TGCCAT ACTTCC A TTCAAGGCG C T CCT GGGGTTTGTT CAG AAAGAGGACAAGGTTGAT CTGCCGCAAATGTGGTGGCCGTATCGGTAATGCTTATGAGGATGAGGATT CCA CATTGTATGATGGTTCAGATGATTTGCACATGAG CTCCGAGGGC TACAGCATGT CGAGT GGAAAGAAATATGTTA TCAAGATTAATGCACTGCAG CCTTCAACCGATG ACTCTGG TGTTCCCTTCA CCCTGTGATGCTGTTCTGAACTT CTG  CAGTA T GCACTTTT CGATTCTTG CCTTG CGCT                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF332326             [                                              GTCGCCTTTGCCCTGCCCTGCACTGACCGTTGGAGAGCCAAGCAACCCAACCCAAGCGCTCTTCTCTTCTCCTCCTCTTCCTCCCAAATCGATCGGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGGACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGCTGTGGTTACTGTGGCTATGCATTGAACCTGAGCTCCTCAACACGGAACACAGCGAACATTGGATCCAAGTATGGTAAGCAGATCAGGAAAGGTGTAATCTCATTCTTTGCGATCGACGAGAGTCGGT TCACACAAACTGA TGAGGTGAGCTGCA TGCCAT ACTTCC A TTCAAGGCT C T CCT GGGGTTTGTT CAG AAAGAGGACAAGGTTGAT CTGCCGCAAATGTGGTGGCCGTATCGGTAATGCTTATGAGGATGAGGATT CCA CATTGTATGATGGTTCAGATGATTTGCACATGAG CTCCGAGGGC TACAGCATGT CGAGT GGAAAGAAATATGTTA TCAAGATTAATGCACTGCAG CCTTCAACCGATG ACTCTGG TGTTCCCTTCA CCCTGTGATGCTGTTCTGAACTT                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF279755             [                                             aattcCCTTGGACCTG ACTGGACTGA AGGAGTAGA AAAAGCAACCCAACCCAAGCGCTCTTCTCTTCTCCTCCTCTTCCTCCCAAATCGATCGGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGGACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGCTGTGGTTACTGTGGCTATGCATTGAACCTGAGCTCCTCAACACGGAACACAGCGAACATTGGATCCAAGTATGGTAAGCAGATCAGGAAAGGTGTAATCTCATTCTTTGCGATCGACGAGAGTCGGT TCACACAAACTGA TGAGGTGAGCTGCA TGCCAT ACTTCC A TTCAAGGCGCC T CCT GGGGTTTGTT CAG AAAGAGGACAAGGTTGAT CTGCCGCAAATGTGGTGGCCGTATCGGTAATGCTTATGAGGATGAGGATT CCA CATTGTATGATGGTTCAGATGATCTGCACATGAGCCTCCGAGGGCNTACAGCATGT CGAGT GGAAAGAAATATGTTA TCAAGATTAATGCACTGCAG CCTTCAACCGATGAACTCTGG TGTTCCCTTCA CCCTGGNATGCTGTTCTGAACTT CTG  CAGTA T GCACTTTT CGATTCTTG CCTTG CGCT ATACTGGACTGT CAATCAAGT AA                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSC516               [                                                                TGCACTGACCGTTGGAGAGCCAAGCAACCCAACCCAAGCGCTCTTCTCTTCTCCTCCTCTTCCTCCCAAATCGATCGGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGGACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGCTGTGGTTACTGTGGCTATGCATTGAACCTGAGCTCCTCAACACGGAACACAGCGAACATTGGATCCAAGTATGGTAAGCAGATCAGGAAAGGTGTAATCTCATTCTTTGCGATCGACGAGAGTNGTT TCACACAAACTGA TGAGGTGAGCTGCA TGCCAT ACTTCC A TTCAAGGCG C T NCTGGGGGTTTGTT CAG AAAGAGGACAAGGTTGAT CTGCCGCAAATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF312064             [                                                                                             CAACCCAAGCGCTCTTCTCTTCTCCTCCTCTTCCTCCCAAATCGATCAGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGGACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGCTGTGGTTACTGTGGCTATGCATTGAACCTGAGCTCCTCAACACGGAACACAGCGAACATTGGATCCAAGTATGGTAAGCAGATCAGGAAAGGTGTAATCTCATTCTTTGCGATCGACGAGAGTCGGT TCACACAAACCGA TGAGGTGAGCTGCA TGCCAT ACTTCC A TTCAAGGCG CNT CCT GGGGTTTGTT CAG AAAGAGGACAAGGTTGAT CTGCCGCAAATGTGGTGGCCGTATCGGTAATGCTTATGAGGATGAGGATT CCA CATTGTATGATGGTTCAGATGATTTGCACATGAG CTCCGAGGGC TACAGCATGT CGAGT GGAAAGAAATATGTTA TCAAGATTAATGCACTGCAG CCTTCAACCGATG ACTCTGG TGTTCCCTTCA CCCTGTGATGCTGTTCTGAACTT CTG  CAGTA T GCACTTTT CGATTCTTG CCTTG CGCT                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSC8791              [                                                                                                                                                                                                                                                                                                                 TAAGCAGATCAGGAAAGGTGTAATCTCATTCTTTGCGATCGACGAGAGTNGNTNTCACACAAACTGA TGAGGTGAGCTGCA TGCCAT ACTTCC A TTCAAGGCG C T CCT GGGGTTTGTT CAG AAAGAGGACAAGGTTGAT CTGCCGCAAATGTGGTGGCCGTATCGGTAATGCTTATGAGGATGAGGATT CCA CATTGTATGATGGTTCAGATGATTTGCACATGAG CTCCGAGGGC TACAGCATGT CGAGTNGGAAGGAAATATGTTA TCAAGATTAATGCACTGCAG CCTTCAACCGATG ACTCTGG TGTTCCCTTCA CCCTGTGATGCTGTCCTGACCTT CTT  CAGTA T GCACTTTT GGATTCTTGNCCTT  CGGT AT                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU162120             [                                                                                                                                                                                                                                                                                                                                                                               ACTGATTGAGNTGACCTGCANTCCCATAACTTCCNATTTCAAGGCG C TCCCT GGGGTTTGTTCCAGAAAAGAGGACAA GTTGATCCTGCCGCAAATGTGGTGGCCNTACCGGTAATGCTTATGAGGATGAGGATTCCCA CATTGTATGATGGTTCAGATGATTTGCACATGAG CTCCGAGGGC TACAGCATGTCCGANT GGAAAGAAATATGTTA TCAAGATTAATGCACTGCAG  CTTCAACCGATG ACTCTGG TGTTCCCTTCA CCCTGTGATGCTGTTCTGAACTTCCTG  CAGTA TGGCACTTTTNCGATTCTTGCCCTTGCCGCTAATACTGGACTGTNCAATCAAGTAAACTGCAGAACCCAAGAGATTCCGTGCTAGTGTGT ACTGTATATTTTGATAGG ATGCCTGAATTTTGCCCTACCTGTATTTATAAAATGGAAGAGTTTGTTGTCTATTTACATATACATTCAGAGTTCAGTG G GTGTGCAACTGTGCATCATGGACCTGGATTTGGCAATCCATATTTGGGCAAATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATTCTAAACGGCAGTTTTTTTTTGTTTGTGTTTAAAAAAAAAAAAAAA]
[-] EMBL CF312065             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGTATCGGTAATGCTTATGAGGATGAGGATT CCACCATTGTATGATGGTTCAGATGATTTGCACATGAG CTCCGAGGGC TACAGCATGT CGAGT GGAAAGAAATATGTTANTCAAGATTAATGCACTGCAGCCCTTCAACCGATG ACTCTGGNTGTTCCCTTCACCCCTGTGATGCTGTTCTGAACTT CTGCCCAGTA T GCACTTTT CGATTCTTG CCTTG CGCT ATACTGGACTGT CAATCAAGT AACTGCAGAA CCAAGAGATTACGTGCTAGTGTGTAACTGTATATTTTGATAGGAATG CTGAATTTTG CCTACCTGTATTTATAAAATGGAAGAGTTTGTTGTCTATTTACATATACATTCAGAGTTCAGTG G GTGTGCAACTGTGCATCGTGGACCTGGATTTGGCAATCCATATTTGGGCAAATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATTCTAAAa                                       ]
[-] EMBL CF312770             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATGCTTATGAGGATGAGGATT CCA CATTGTATGATGGTTCAGATGATTTGCACATGAG CTCCGAGGGC TACAGCATGT CGAGT GGAAAGAAATATGTTA TCAAGATTAATGCACTGCAG CCTTCAACCGATG ACTCTGG TGTTCCCTTCACCCCTGTGATGCTGTTCTGAACTT CTG  CAGTANT GCACTTTT CGATTCTTG CCTTG CGCT ATACTGGACTGT CAATCAAGT AACTGCAGAA CCAAGAGATTACGTGCTAGTGTGTAACTGTATATTTTGATAGGAATG CTGAATTTTG CCTACCTGTATTTATAAAATGGAAGAGTTTGTTGTCTATTTACATATACATTCAGAGTTCAGTG G GTGTGCAACTGTGCATCATGGACCTGGATTTGGCAATCCATATTTGGGCAAATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATTCTAAACGGCAGTTTTTTTTAAAAAAAa                  ]
[-] EMBL CF278155             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GT GGAAAGAAATATGTTA TCAAGATTAATGCACTGCAG CCTTCAACCGATG ACTCTGG TGTTCCCTTCA CCCTGTGATGCTGTTCTGAACTT CTG  CAGTA T GCACTTTT CGATTCTTG CCTTG CGCT ATACTGGACTGT CAATCAAGT AACTGCAGAA CCAAGAGATTACGTGCTAGTGTGTAACTGTATATTTTGATAGGAATG CTGAATTTTG CCTACCTGTATTTATAAAATGGAAGAGTTTGTTGTCTATTTACATATACATTCAGAGTTCAGTG G GTGTGCAACTGTGCATCATGGACCTGGATTTGGCAATCCATATTTGGGCAAATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTAaaaaaaa                                        ]
[-] EMBL CF279756             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCA CCCTGTGATGCTGTTCTGAACTT CTG  CAGTA T GCACTTTT CGATTCTTG CCTTG CGCT ATACTGGACTGT CAATCAAGT AACTGCAGAA CCAAGAGATTACGTGCTAGTGTGTAACTGTATATTTTGATAGGAATG CTGAATTTTG CCTACCTGTATTTATAAAATGGAAGAGTTTGTTGTCAATAAACATATACATTCAGAGTTCAGAGAGAGTGTGCAACTGTGCATAAAAAAAATGGATTTGGCAATCCATATTTGGGCAAATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTT                                                                                ]
[-] EMBL CF314589             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATTCTAAACGGCAGTTTTTTTTTAAAAAA                   ]


>consensus_14685#0 CATGGACTAAGGAGTAGAAAAGAGCCAGCCGAGCCAGCGCGGCGCGGTCGCCTTTGCCCT GCCCTGCACTGACCGTTGGAGAGCCAAGCAACCCAACCCAAGCGCTCTTCTCTTCTCCTC CTCTTCCTCCCAAATCGATCGGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGG ACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGCTGTGGTTAC TGTGGCTATGCATTGAACCTGAGCTCCTCAACACGGAACACAGCGAACATTGGATCCAAG TATGGTAAGCAGATCAGGAAAGGTGTAATCTCATTCTTTGCGATCGACGAGAGTCGGTTC ACACAAACTGATGAGGTGAGCTGCATGCCATACTTCCATTCAAGGCGCTCCTGGGGTTTG TTCAGAAAGAGGACAAGGTTGATCTGCCGCAAATGTGGTGGCCGTATCGGTAATGCTTAT GAGGATGAGGATTCCACATTGTATGATGGTTCAGATGATTTGCACATGAGCTCCGAGGGC TACAGCATGTCGAGTGGAAAGAAATATGTTATCAAGATTAATGCACTGCAGCCTTCAACC GATGACTCTGGTGTTCCCTTCACCCTGTGATGCTGTTCTGAACTTCTGCAGTATGCACTT TTCGATTCTTGCCTTGCGCTATACTGGACTGTCAATCAAGTAACTGCAGAACCAAGAGAT TACGTGCTAGTGTGTAACTGTATATTTTGATAGGAATGCTGAATTTTGCCTACCTGTATT TATAAAATGGAAGAGTTTGTTGTCTATTTACATATACATTCAGAGTTCAGTGGGTGTGCA ACTGTGCATCATGGACCTGGATTTGGCAATCCATATTTGGGCAAATGTTTAGTTAGAAAT CAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGT CTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATTCTAAACGGCAGT TTTTTTTTAAAAAAGTTTAAAAAAAAAAAAAAA



consensusID : consensus_14685#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence
                              [CTCTTCTCTTCTCCTCCTCTTCCTCCCAAATCGCTCTGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGGACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGGTTGGTTCGCTTCGATCCCCTTCCCCCTTCTTTTTCCGCTGCTTGGATCAAGAACACGGGTTCTAGGAGAGGCTAGGATAGGCGAAACCCTGGGTTGAATCATTCGTCTTGATTAGTGTACTTAGAAGAGTGTTTCTTGGGTTGTTCAAGAGTGCAGTTATAAATTCGATCTGTTTGCAGCTGCTGGGCTCGGATGGATCTTGAAATTTCTTTTAATTGGTTTTGACTGTTAGTGATTGGTGTGCTTGCTAATGGCTCAAACTGGACTGATCAGAAAGCGCACCAACTTCGATCAGCTGGACTGAAAACTGAATTAGTGGCACTTTTACTTCTTGTGACAGATCATGGTCTTTTGTTCAATAGAAGGAATTGAATGTGACATTACGTTTGGCTTGCTGAAAAGTGAAAATTACATCCTCATACCTGAATCGACAGTTTGACACTAACAACTCTCCTATGAAACTTAATTTTTAGGATTTTGATTGCGTATTGAGCACGGAATTGTCATTTTCGTGAAAATTGTGAAAATTTTCT]

[+] EMBL CB000102             [CTCTTCTCTTCTCCTCCTCTTCCTCCCAAATCGCTCTGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGGACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGGTTGGTTCGCTTCGATCCCCTTCCCCCTTCTTTTTCCGCTGCTTGGATCAAGAACACGGGTTCTAGGAGAGGCTAGGATAGGCGAAACCCTGGGTTGAATCATTCGTCTTGATTAGTGTACTTAGAAGAGTGTTTCTTGGGTTGTTCAAGAGTGCAGTTATAAATTCGATCTGTTTGCAGCTGCTGGGCTCGGATGGATCTTGAAATTTCTTTTAATTGGTTTTGACTGTTAGTGATTGGTGTGCTTGCTAATGGCTCAAACTGGACTGATCAGAAAGCGCACCAACTTCGATCAGCTGGACTGAAAACTGAATTAGTGGCACTTTTACTTCTTGTGACAGATCATGGTCTTTTGTTCAATAGAAGGAATTGAATGTGACATTACGTTTGGCTTGCTGAAAAGTGAAAATTACATCCTCATACCTGAATCGACAGTTTGACACTAACAACTCTCCTATGAAACTTAATTTTTAGGATTTTGATTGCGTATTGAGCACGGAATTGTCATTTTCGTGAAAATTGTGAAAATTTTCT]


>consensus_14685#1 CTCTTCTCTTCTCCTCCTCTTCCTCCCAAATCGCTCTGGATCCGATGCGCACGGAGGAGG AAGGAGCATGGTGAGGACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGC CTACAGGTTGGTTCGCTTCGATCCCCTTCCCCCTTCTTTTTCCGCTGCTTGGATCAAGAA CACGGGTTCTAGGAGAGGCTAGGATAGGCGAAACCCTGGGTTGAATCATTCGTCTTGATT AGTGTACTTAGAAGAGTGTTTCTTGGGTTGTTCAAGAGTGCAGTTATAAATTCGATCTGT TTGCAGCTGCTGGGCTCGGATGGATCTTGAAATTTCTTTTAATTGGTTTTGACTGTTAGT GATTGGTGTGCTTGCTAATGGCTCAAACTGGACTGATCAGAAAGCGCACCAACTTCGATC AGCTGGACTGAAAACTGAATTAGTGGCACTTTTACTTCTTGTGACAGATCATGGTCTTTT GTTCAATAGAAGGAATTGAATGTGACATTACGTTTGGCTTGCTGAAAAGTGAAAATTACA TCCTCATACCTGAATCGACAGTTTGACACTAACAACTCTCCTATGAAACTTAATTTTTAG GATTTTGATTGCGTATTGAGCACGGAATTGTCATTTTCGTGAAAATTGTGAAAATTTTCT



consensusID : consensus_14685#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence
                              [GGAGCTCATGTGCAAATCATCTGAACTTCTGCAGTATGCACTTTTCGATTCTTCCTTGCGCTATACTGGACTGTCAATCAAGTAACTCAGAACCACAGAGATTACGTGCTAGTGTGTAACTGTATATTTTGATAGGAATGCTGAATTTTGCCTACCTGTATTTATAAAATGGAAGATTTGTTGTCTATTTACATATACATTCAGAGTTCAGTGGGTGTGCAACTGTGCATCATGGACCTGGATTTGGCATCCACTTTTTGGGCATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATTCTAAACGGCCGTTTTTTTTTGTTTGTGTTTAAAAAAAAAA]

[+] EMBL BI808943             [GGAGCTCATGTGCAAATCATCTGAACTTCTGCAGTATGCACTTTTCGATTCTTCCTTGCGCTATACTGGACTGTCAATCAAGTAACTCAGAACCACAGAGATTACGTGCTAGTGTGTAACTGTATATTTTGATAGGAATGCTGAATTTTGCCTACCTGTATTTATAAAATGGAAGATTTGTTGTCTATTTACATATACATTCAGAGTTCAGTGGGTGTGCAACTGTGCATCATGGACCTGGATTTGGCATCCACTTTTTGGGCATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATTCTAAACGGCCGTTTTTTTTTGTTTGTGTTTAAAAAAAAAA]


>consensus_14685#2 GGAGCTCATGTGCAAATCATCTGAACTTCTGCAGTATGCACTTTTCGATTCTTCCTTGCG CTATACTGGACTGTCAATCAAGTAACTCAGAACCACAGAGATTACGTGCTAGTGTGTAAC TGTATATTTTGATAGGAATGCTGAATTTTGCCTACCTGTATTTATAAAATGGAAGATTTG TTGTCTATTTACATATACATTCAGAGTTCAGTGGGTGTGCAACTGTGCATCATGGACCTG GATTTGGCATCCACTTTTTGGGCATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAG TGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTTGTGTATCT AAAGAATGATGTAAATCTTCAGCTATTCTAAACGGCCGTTTTTTTTTGTTTGTGTTTAAA AAAAAAA



consensusID : consensus_14685#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence
                              [GGACTGTCAACCAAGTAACTGCCAGAACCAAGAGNATTACGTGCTAGTGTGTAACTGTATATTTTGATAGGAATGCTGAATTTTGCCTACCTGTATTTATAAAATGGAAGAGTTTGTTGTCTATTTACATATACATTCAGAGTTCAGTGGGTGTGCAACTGTGCATCATGGACCTGGATTTGGCAATCCATATTTGGGCAAATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATTCTAAAAAAAAAAAAAAAAAA]

[+] EMBL C99256               [GGACTGTCAACCAAGTAACTGCCAGAACCAAGAGNATTACGTGCTAGTGTGTAACTGTATATTTTGATAGGAATGCTGAATTTTGCCTACCTGTATTTATAAAATGGAAGAGTTTGTTGTCTATTTACATATACATTCAGAGTTCAGTGGGTGTGCAACTGTGCATCATGGACCTGGATTTGGCAATCCATATTTGGGCAAATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATTCTAAAAAAAAAAAAAAAAAA]


>consensus_14685#3 GGACTGTCAACCAAGTAACTGCCAGAACCAAGAGNATTACGTGCTAGTGTGTAACTGTAT ATTTTGATAGGAATGCTGAATTTTGCCTACCTGTATTTATAAAATGGAAGAGTTTGTTGT CTATTTACATATACATTCAGAGTTCAGTGGGTGTGCAACTGTGCATCATGGACCTGGATT TGGCAATCCATATTTGGGCAAATGTTTAGTTAGAAATCAGGTTTCTGATGATGTTCAGTG GTGTGTACTTGTGTCTTGTACTGAAATATTGTAGTGTCTTTTGATTTTTTGTGTATCTAA AGAATGATGTAAATCTTCAGCTATTCTAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14685#2      ------------------------------------------------------------
consensus_14685#3      ------------------------------------------------------------
consensus_14685#0      CATGGACTAAGGAGTAGAAAAGAGCCAGCCGAGCCAGCGCGGCGCGGTCGCCTTTGCCCT 60
consensus_14685#1      ------------------------------------------------------------
                                                                                   

consensus_14685#2      ------------------------------------------------------------
consensus_14685#3      ------------------------------------------------------------
consensus_14685#0      GCCCTGCACTGACCGTTGGAGAGCCAAGCAACCCAACCCAAGCGCTCTTCTCTTCTCCTC 120
consensus_14685#1      ------------------------------------------------------------
                                                                                   

consensus_14685#2      ------------------------------------------------------------
consensus_14685#3      ------------------------------------------------------------
consensus_14685#0      CTCTTCCTCCCAAATCGATCGGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGG 180
consensus_14685#1      ------------------------------------------------------------
                                                                                   

consensus_14685#2      ------------------------------------------------------------
consensus_14685#3      ------------------------------------------------------------
consensus_14685#0      ACGCCCGAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGCTGTGGTTAC 240
consensus_14685#1      ------------------------------------------------------------
                                                                                   

consensus_14685#2      ------------------------------------------------------------
consensus_14685#3      ------------------------------------------------------------
consensus_14685#0      TGTGGCTATGCATTGAACCTGAGCTCCTCAACACGGAACACAGCGAACATTGGATCCAAG 300
consensus_14685#1      ------------------------------------------------------------
                                                                                   

consensus_14685#2      ------------------------------------------------------------
consensus_14685#3      ------------------------------------------------------------
consensus_14685#0      TATGGTAAGCAGATCAGGAAAGGTGTAATCTCATTCTTTGCGATCGACGAGAGTCGGTTC 360
consensus_14685#1      ------------------------------------------------------------
                                                                                   

consensus_14685#2      ------------------------------------------------------------
consensus_14685#3      ------------------------------------------------------------
consensus_14685#0      ACACAAACTGATGAGGTGAGCTGCATGCCATACTTCCATTCAAGGCGCTCCTGGGGTTTG 420
consensus_14685#1      --------------------------------------CTCTTCTCTTCTCCTCCTCTTC 22
                                                                                   

consensus_14685#2      ------------------------------------------------------------
consensus_14685#3      ------------------------------------------------------------
consensus_14685#0      TTCAGAAAGAGGACAAGGTTGATCTGCCGCAAATGTGGTGGCCGTATCGGTAATGCTTAT 480
consensus_14685#1      CTCCCAAATCGCTCTGGATCCGATGCGCACGGAGGAGGAAGGAGCATGGTGAGGACGCCC 82
                                                                                   

consensus_14685#2      ------------------------------------------------------------
consensus_14685#3      ------------------------------------------------------------
consensus_14685#0      GAGGATGAGGATTCCACATTGTATGATGGTTCAGATGATTTGCACATGAGCTCCGAGGGC 540
consensus_14685#1      GAGAGGAGCTACTCCTGCTCCTCCGCCAAGGAAGTCGCCTACAGGTTGGTTCGCTTCGAT 142
                                                                                   

consensus_14685#2      ------------------------------------------------------------
consensus_14685#3      ------------------------------------------------------------
consensus_14685#0      TACAGCATGTCGAGTGGAAAGAAATATGTTATCAAGATTAATGCACTGCAGCCTTCAACC 600
consensus_14685#1      CCCCTTCCCCCTTCTTTTTCCGCTGCTTGGATCAAGAACACGGGTTCTAGGAGAGGCTAG 202
                                                                                   

consensus_14685#2      -----------------GGAGCTCATGTGCAAATCATCTGAACTTCTGCAGTATGCACTT 43
consensus_14685#3      ------------------------------------------------------------
consensus_14685#0      GATGACTCTGGTGTTCCCTTCACCCTGTGATGCTGTTCTGAACTTCTGCAGTATGCACTT 660
consensus_14685#1      GATAGGCGAAACCCTGGGTTGAATCATTCGTCTTGATTAGTGTACTTAGAAGAGTGTTTC 262
                                                                                   

consensus_14685#2      TTCGATTCTT-CCTTGCGCTATACTGGACT--GTCAATCAAGTAACT--CAGAACCACAG 98
consensus_14685#3      -------------------------GGACT--GTCAACCAAGTAACTGCCAGAACCAAGA 33
consensus_14685#0      TTCGATTCTTGCCTTGCGCTATACTGGACT--GTCAATCAAGTAACTG-CAGAACCA-AG 716
consensus_14685#1      TTGGGTTGTTCAAGAGTGCAGTTATAAATTCGATCTGTTT-GCAGCTGCTGGGCTCGGAT 321
                                                  * *   **      * * **    *   *    

consensus_14685#2      AGATTACGTGCTAGTGTGTAACTGTATATT-TTGATAG-GAATGCTGAATTT--TGCCTA 154
consensus_14685#3      GNATTACGTGCTAGTGTGTAACTGTATATT-TTGATAG-GAATGCTGAATTT--TGCCTA 89
consensus_14685#0      AGATTACGTGCTAGTGTGTAACTGTATATT-TTGATAG-GAATGCTGAATTT--TGCCTA 772
consensus_14685#1      GGATCTTGAAATTTCTTTTAATTGGTTTTGACTGTTAGTGATTGGTGTGCTTGCTAATGG 381
                         **   *   *    * *** **  * *   ** *** ** ** **   **  *     

consensus_14685#2      CCTGTATTTATAAAATGGAAGA-TTTGTTGTCTATTTACATATACATTCAGAGTTCAGTG 213
consensus_14685#3      CCTGTATTTATAAAATGGAAGAGTTTGTTGTCTATTTACATATACATTCAGAGTTCAGTG 149
consensus_14685#0      CCTGTATTTATAAAATGGAAGAGTTTGTTGTCTATTTACATATACATTCAGAGTTCAGTG 832
consensus_14685#1      CTCAAACTGGACTGATCAGAAAGCGCACCAACTTCGATCAGCTGGACTGAAAACTGAATT 441
                       *    * *      **   * *         **     **  *  * * * *  * * * 

consensus_14685#2      GGTGTGCAACTGTGCATCATGGACCTGGATTTGGCATCCACTTTTTGGGC--ATGTTTAG 271
consensus_14685#3      GGTGTGCAACTGTGCATCATGGACCTGGATTTGGCAATCCATATTTGGGCAAATGTTTAG 209
consensus_14685#0      GGTGTGCAACTGTGCATCATGGACCTGGATTTGGCAATCCATATTTGGGCAAATGTTTAG 892
consensus_14685#1      AGTG-GCACTTTTACTTCTTGTGACAGATCATGGTCTTTTGTTCAATAGAAGGAATTGAA 500
                        *** ***  * * * ** **   * *    ***       *      *      ** * 

consensus_14685#2      TTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAAT-- 329
consensus_14685#3      TTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAAT-- 267
consensus_14685#0      TTAGAAATCAGGTTTCTGATGATGTTCAGTGGTGTGTACTTGTGTCTTGTACTGAAAT-- 950
consensus_14685#1      TGTGACATTACGTTTGGCTTGCTGAAAAGTGAAAATTACAT---CCTCATACCTGAATCG 557
                       *  ** ** * ****    ** **   ****     *** *    **  ***   ***  

consensus_14685#2      --ATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATT 387
consensus_14685#3      --ATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATT 325
consensus_14685#0      --ATTGTAGTGTCTTTTGATTTTTTGTGTATCTAAAGAATGATGTAAATCTTCAGCTATT 1008
consensus_14685#1      ACAGTTTGACACTAACAACTCTCCTATGAAACTTAATTTTTAGGATTTTGATTGCGTATT 617
                         * * *            * *  * ** * ** **   * * *    *  *    ****

consensus_14685#2      CTAAACGGCCGTTTTTTTTTGTTTGTGTTTAAAAAAAAAA----- 427
consensus_14685#3      CTAAAAAAAA--------------------AAAAAAAAAA----- 345
consensus_14685#0      CTAAACGGCAGTTTTTTTTTAAAAAAGTTTAAAAAAAAAAAAAAA 1053
consensus_14685#1      GAGCACGGAATTGTCATTTTCGTGAAAATTGTGAAAATTTTCT-- 660
                           *                            ****        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)