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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1752 fasta sequence
[TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTAAACTTGATTTTTTATGTATATTTCAATGATACTCTTTTCAAGTAGGCCACCTGTTCACCCATTATGACACTTTTTATTTTCATCCTTGTTAGTGTTTACTAAAGTTTACTTAATTATGGCAGCATTAGTTCTTAATTGAATAATGTCACTTCTGAACATCATATAATGGTGGATTGCTGTTTGTGCAAGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGGGAAAAGTCACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGAATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGTTCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTGCTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCTACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACAGGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACTTCGAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGAAGCCTTACGTTGCCTGAACCAACTGAATCAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATG-CCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGACAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTGATTGAATAACTGGTTTTAGGTTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAAAGCAATTCACCAATCAGGTTCTCGGCCGCTAAAAAAAAAA]
[+] EMBL AK099882 [TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTAAACTTGATTTTTTATGTATATTTCAATGATACTCTTTTCAAGTAGGCCACCTGTTCACCCATTATGACACTTTTTATTTTCATCCTTGTTAGTGTTTACTAAAGTTTACTTAATTATGGCAGCATTAGTTCTTAATTGAATAATGTCACTTCTGAACATCATATAATGGTGGATTGCTGTTTGTGCAAGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGGGAAAAGTCACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGAATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGTTCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTGCTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCTACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACAGGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACTTCGAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGAAGCCTTACGTTGCCTGAACCAACTGAATCAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATG CCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGACAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTGATTGAATAACTGGTTTTAGGTTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAAAGCAATTCACCAATCAGGTTCT ]
[+] EMBL BI806933 [ CTATAGTTGCT CTGGGATTGATGGACTCAGGAGAAGCCTTACGTTGCCTGAACCAACTGAATCAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTC AAAGGATGTCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGACAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCNCGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTGATTGAATAACTGGTTTTAGATTTCC AAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAAT AAGCAATTCACCAATCAGGTTCTCGGCCGCTAAAAAAAAAA]
consensusID : consensus_14690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1542 fasta sequence
[TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAGTCACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGAATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGTTCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTGCTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCTACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACAGGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACTTC-GAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA-AGCCTTACGTTGCCTGA-ACCAACTG-AAT-CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA-CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC-AGTTGCAGTAA-TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAAAGCAATTCACCAATCAGGTTCT]
[+] EMBL AK066867 [TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAGTCACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGAATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGTTCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTGCTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCTACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACAGGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACTTC GAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAAAGCAATTCACCAATCAGGTTCT]
[+] EMBL CF305613 [TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATG ]
[-] EMBL CB629745 [ ccCTAAGAACTCCATCCCCACCTGGGATCCCTCTTGATCTCTTCACCAACTTC AAAATTAAATCCTTCAATGCGTGCGCAAACCCCCACTTGGCCCTTGCTGCTATAGTTGCTGCTGGGATTAATGGACTCAGGAGA ACCCTTACTTTCCCTGA ACCAACTG AAT CAACCCCTGCAGGTTATCCCTCCAACTCCAAGCTCAAAAGGATCCCGAAGGACTTGATGGAATCTTTCGAACCCCTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCCCTCCCGTTATTGCTGTACGAAAGGCTGAGATTGATCACTACGAGAAGACCCCTGCAGCATTCCCCGATCTCATTCCCCGTTATTAGGGTGAACCACTAGTTAGTTCCCCGGAGCAAAGAGGATTACGAGTAAATTATTACAACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCCCTGTACTTGC AGTTCCAGTGG TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAAAAA ]
[+] EMBL BI810205 [ GGATACCTC TGATCTCGCCAGCAACTTCGGAAATGAAAT CTTCGATGCGTGCGCAAACCCGCACTT GGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT C AACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CCAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATTGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAAAAAAAGGGCACTTGGC AACTCATCCTTCTAGAGAAAATAAAGCAATTCACCAAaaaaa ]
[-] EMBL CB636474 [ C GAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCTTGA ACCAATTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGT CTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTGATTGAATAACTGGTTT ]
[+] EMBL CF339963 [ gagtagaaaTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAA ]
[+] EMBL CF340089 [ GTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAA ]
[+] EMBL CF340738 [ GTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AG ]
[+] EMBL CF339284 [ GTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAA ]
[+] EMBL BM420697 [ TTGATGGACTCCGGAGAGAGCCTTACGTTGCCTGAGACCCACTGNTATCCTTACCCTGCCGGTTATGCCTCCCACTCCCAGCTCCAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGACCAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATTGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGNTACTAGGGTGAAACACTAGTTAGTTCCCCGGAGCCAAGAGGATTACGAGTGAATTACTACGACCCCCGAAATTGCTTATTCTCGCGTCCTTTTCCCCTGTACTTCCNATTCCCAGTAA TTTTTTTTTGATTGAAAAAaaaaa ]
[-] EMBL AI978457 [ nnngn nnnAACTG AAT CANNNNNTGCAGGNNATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATTGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAATTTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAAA ]
consensusID : consensus_14690#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence
[TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAG-CACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAGGGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAGGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAAGCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTNNNNNANCCTGANNNNNNT]
[+] EMBL CF324150 [TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAG CACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAGGGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAG ]
[+] EMBL AI978456 [ GGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAGTCACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAA AGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAAGCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTNNNNNANCCTGANNNNNNT]
consensusID : consensus_14690#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[GGGGGGTTTAATCCCTCCCAAACTCCAAAGCTCCAAAAGGGGATTGCCCGAAGGACCTTGATGGAAATCTGTCGAAGCACTAGCTGCAGACAAAAACCATGCAGGAATTTGACCGGGCGATAAACTTTGGTCACTTCCCGTTATTGCTGGTACAAAGGGCTGAGACCGATCACTACCGAGAAGAACCCTGCAAGAATTCGCCGATCTAATTCACCGTTACTAGGGTGAAACACTAGGTTAGTCCCCACGGAGCAAAGGGGATTCCGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTGCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTGATTGAATAACTGGTTT]
[-] EMBL D43229 [GGGGGGTTTAATCCCTCCCAAACTCCAAAGCTCCAAAAGGGGATTGCCCGAAGGACCTTGATGGAAATCTGTCGAAGCACTAGCTGCAGACAAAAACCATGCAGGAATTTGACCGGGCGATAAACTTTGGTCACTTCCCGTTATTGCTGGTACAAAGGGCTGAGACCGATCACTACCGAGAAGAACCCTGCAAGAATTCGCCGATCTAATTCACCGTTACTAGGGTGAAACACTAGGTTAGTCCCCACGGAGCAAAGGGGATTCCGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTGCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTGATTGAATAACTGGTTT]
consensusID : consensus_14690#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence
[TCNCTGCGACAAGAACCCTGCANCATTCGCCGATCTCATTCACCGTGGACTAGGGGTGANACACTANTTANTTCCACGGGAGCAAAGAGGATTACGANTGAATTACTACGACCCNCGAAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTTTGATTGAATAACTGGGTTTTAGATTTCCNAAAAAAGGGGCGCTTGGCAAACTCATCCTNCTAGAGAANNNGGGGGCAATTCACCAATCAGGGTTCTCGG]
[+] EMBL BE228744 [TCNCTGCGACAAGAACCCTGCANCATTCGCCGATCTCATTCACCGTGGACTAGGGGTGANACACTANTTANTTCCACGGGAGCAAAGAGGATTACGANTGAATTACTACGACCCNCGAAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTTTGATTGAATAACTGGGTTTTAGATTTCCNAAAAAAGGGGCGCTTGGCAAACTCATCCTNCTAGAGAANNNGGGGGCAATTCACCAATCAGGGTTCTCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTC 60
consensus_14690#1 ------------------------------------------------------------
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 AACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTA 120
consensus_14690#1 ------------------------------------------------------------
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 TTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAA 180
consensus_14690#1 ------------------------------------------------------------
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 CAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGC 240
consensus_14690#1 ------------TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTG 48
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 TTCCATGGTAAACTTGATTTTTTATGTATATTTCAATGATACTCTTTTCAAGTAGGCCAC 300
consensus_14690#1 ATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTA 108
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 CTGTTCACCCATTATGACACTTTTTATTTTCATCCTTGTTAGTGTTTACTAAAGTTTACT 360
consensus_14690#1 GGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCC 168
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 TAATTATGGCAGCATTAGTTCTTAATTGAATAATGTCACTTCTGAACATCATATAATGGT 420
consensus_14690#1 CAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAA 228
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 GGATTGCTGTTTGTGCAAGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAA 480
consensus_14690#1 CACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAA 288
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 GGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGGGAAAAGTCACAAAAGTTC 540
consensus_14690#1 GGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAGTCACAAAAGTTC 348
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 TGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTA 600
consensus_14690#1 TGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTA 408
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 AAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCT 660
consensus_14690#1 AAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCT 468
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 CAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAG 720
consensus_14690#1 CAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAG 528
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 CGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAG 780
consensus_14690#1 CGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAG 588
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 CCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTA 840
consensus_14690#1 CCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTA 648
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 TTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGA 900
consensus_14690#1 TTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGA 708
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 ATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGT 960
consensus_14690#1 ATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGT 768
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 TCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTG 1020
consensus_14690#1 TCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTG 828
consensus_14690#2 ------------------------------------------------------------
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 CTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCT 1080
consensus_14690#1 CTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCT 888
consensus_14690#2 -----------------------TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGT 37
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 ACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACA 1140
consensus_14690#1 ACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACA 948
consensus_14690#2 CGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTA 97
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 GGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACT 1200
consensus_14690#1 GGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACT 1008
consensus_14690#2 TGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATT 157
consensus_14690#3 ------------------------------------------------------------
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 TCGAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTG 1260
consensus_14690#1 TCGAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTG 1068
consensus_14690#2 TACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCC 217
consensus_14690#3 --------------------------------------------------GGGGGGTTTA 10
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 CTGCTGGGATTGATGGACTCAGGAGAAGCCTTACGTTGCCTGAACCAACTGAATCAAACC 1320
consensus_14690#1 CTGCTGGGATTGATGGACTCAGGAGAAGCCTTACGTTGCCTGAACCAACTGAATCAAACC 1128
consensus_14690#2 GGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGA 277
consensus_14690#3 ATCCCTCCCAAACTCCAAAGCTCCAAAAGGGGATTGCCCGAAGGACCTTGATGGAAATCT 70
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 CTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAA-TCT 1379
consensus_14690#1 CTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAA-TCT 1187
consensus_14690#2 AATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAGC 337
consensus_14690#3 GTCGAAGCACTAGCTGCAGACAAAAACCATGCAGGAATTTGACCG---GGCGATAAACTT 127
consensus_14690#4 ------------------------------------------------------------
consensus_14690#0 GTCGAAGCACTAGCTGCAGACAAAA-TCATGCATGAATTGATC-----GGCGATAAACTT 1433
consensus_14690#1 GTCGAAGCACTAGCTGCAGACAAAA-TCATGCATGAATTGATC-----GGCGATAAACTT 1241
consensus_14690#2 ACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTT 397
consensus_14690#3 TGGTCACTTCCCGTTATTGCTGGTAC--AAAGGGCTGAGACCGATCACTACCGAGAAGAA 185
consensus_14690#4 --------------------------------------------TCNCTGC-GACAAGAA 15
consensus_14690#0 --GTCACTGCC-GTTATTGCTG-TAC--GAAAGGCTGAGATCGATCACTAC-GAGAAGAA 1486
consensus_14690#1 --GTCACTGCC-GTTATTGCTG-TAC--GAAAGGCTGAGATCGATCACTAC-GAGAAGAA 1294
consensus_14690#2 TTCCTACGTAAAAAAGTAGTAAGTGGTGAAAGGGGAGCTGTGGGTCCCATTTGACAATAC 457
** * ** ** *
consensus_14690#3 CCCTGCAAGAATTCGCCGATCTAATTC-ACCGTT-ACTAGGG-TGAAACACTAGGT---T 239
consensus_14690#4 CCCTGCANCA-TTCGCCGATCTCATTC-ACCGTGGACTAGGGGTGANACACTAN-T---T 69
consensus_14690#0 CCCTGCAGCA-TTCGCCGATCTCATTC-ACCGTT-ACTAGGG-TGAAACACTAG-T---T 1538
consensus_14690#1 CCCTGCAGCA-TTCGCCGATCTCATTC-ACCGTT-ACTAGGG-TGAAACACTAG-T---T 1346
consensus_14690#2 CCC--CTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATAT 515
*** * ** * * **** * ** * * ** ** * * *
consensus_14690#3 AGTCCCCACGGAGCAAAGGGGATTCCGAGTGAATTACTACGACCCACGAAA-TTGCTTAT 298
consensus_14690#4 ANTTCCACGGGAGCAAAGAGGATTACGANTGAATTACTACGACCCNCGAAAATTGCTTAT 129
consensus_14690#0 AGTTCC-ACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAA-TTGCTTAT 1596
consensus_14690#1 AGTTCC-ACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAA-TTGCTTAT 1404
consensus_14690#2 ACTTCTCTTAAGGCGGCGGAAATTGTGGTTGAGCAGCTGCA---TGCTGAAGCTGGAAA- 571
* * * ** * *** * *** ** * * ** ** *
consensus_14690#3 TCTCGCGTCCTTTGCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTT--GATTGAATAAC 356
consensus_14690#4 TCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTTTGATTGAATAAC 189
consensus_14690#0 TCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTT--GATTGAATAAC 1654
consensus_14690#1 TCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTT--GATTGAATAAC 1462
consensus_14690#2 ----AGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAAC 627
* * ** * * **** *** ** * * ** *** ***
consensus_14690#3 TGGTTT------------------------------------------------------ 362
consensus_14690#4 TGGGTTTTAGATTTCCNAAAAAAGGGGCGCTTGGCAAACTCATCCTNCTAGAGAANNNGG 249
consensus_14690#0 TGGTTTTAGG--TTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAA 1712
consensus_14690#1 TGGTTTTAGA--TTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAA 1520
consensus_14690#2 TGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTT 687
** *
consensus_14690#3 -----------------------------------------
consensus_14690#4 GGGCAATTCACCAATCAGGGTTCTCGG-------------- 276
consensus_14690#0 AG-CAATTCACCAATCAGGTTCTCGGCCGCTAAAAAAAAAA 1752
consensus_14690#1 AG-CAATTCACCAATCAGGTTCT------------------ 1542
consensus_14690#2 TTCTNNNNNANCCTGANNNNNNT------------------ 710
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||