These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1327 fasta sequence [AACCCCCCCGTATTCGCAGGCTCATCGACTTCTCGTCTTCCTCTCCTCTCTCTCGTTTCGATTCCCCCGCGAGAGATTCGATCCAACCAAACCCACCCGCTACCAGCGTCTTCTCCTTCGCGAGCAAGTTTTTTGAGAGTTTGCAATGGGAGGAAGCGAATACGATGATGACTGGGAGTTGCCTAGCGCTGACATCACTGTAGTTCTTTGCGGCAAACTTGGCTGTGGCAAGAGCGCAACTGGCAATAGCATCGTTGGAAGAGAAGCATTTGTATCAGAGTACTCCCATGCTAGTGTGACCAGTACTTGTCAATTGGCCAGCACCGCGC-TAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGGATTATTTGAAA-TGACCATTACATC-TGAGGATGCCGGTAAAGAAATTGTTAAGTGTA-TGAGTA-TGGCCAAGGAT-GGGATACATGCAGTGC-TGAT-GGTTTTTTCTGCCACATC-TCGTTTTACTCGAGAAGATTCCAGTACCATTGAGACAATTAAAGAGTTTTTCGGAGAGAAGATTGTTGATCACATGATACTAGTATTTACTTATGGAGATTTAGTTGGTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGAAGCAACTTGAAAATTTGCTTGATGTTGTTGACTCTGTGAATACAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACAT-TACCAACATGGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGGAAGAACAGAATGCAAGGCTAGAAGCAGAGAGGTTGGCAGCTGAAGCTAGGCTCCGATCAGATGAGGAGATCCGCAAGCTCAAAAAGCGCCTCGAGAAGGCCCAACAAGAAAATGAGGAATTCCGAAAGATGGCTTCTCAACACAAGTGTTCTATTCTATGAGTAGCTTTCTCCTAGGATCAAGCTGCTGCCATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTGCTCTAGGCTATGTGGTTGACATAAAACTTTTGCTACTGGGCTATCTCATATCTGTAAATATACAGGTATTTGGATTTTTAATGTCCAAGGATTTTGACTATCAAAAAAAAAAAGA] [+] EMBL CF312396 [AACCCCCCCGTATTCGCAGGCTCATCGACTTCTCGTCTTCCTCTTCTCTCTCTCGTTTCGATTCCCCCGCGAGAGATTCGATCCAACCAAACCCACCCGCTACCAGCGTCTTCTCCTTCGCGAGCAAGTTTTTTGAGAGTTTGCAATGGGAGGAAGCGAATACGATGATGACTGGGAGTTGCCTAGCGCTGACATCACTGTAGTTCTTTGCGGCAAACTTGGCTGTGGCAAGAGCGCATCTGGCAATAGCATCGTTGGAAGAGAAGCATTTGTATCAGAGTACTCCCATGCTAGTGTGACCAGTACTTGTCAATTGGCCAGCACCGCGC TAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGGATTATTTGAAA TGACCATTACATC TGAGGATGCCGGTAAAGAAATTGTTAAGTGTA TGAGTA TGGCCAAGGAT GGGATACATGCAGTGC TGAT GGTTTTTTCTGCCACATC TCGTTTTACTCGAGAAGATTCCAGTACCATTGAGACAATTAAAGAGTTTTTCGGAGAGAAGATTGTTGATCACATGATACTAGTAT ] [+] EMBL CF196178 [ CCCGTATTCGCAGGCTCATCGACTTCTCGTCTTCCTCTCCTCTCTCTCGTTTCGATTCCCCCGCGAGAGATTCGATCCAACCAAACCCACCCGCTACCAGCGTCTTCTCCTTCGCGAGCAAGTTTTTTGAGAGTTTGCAATGGGAGGAAGCGAATACGATGATGACTGGGAGTTGCCTAGCGCTGACATCACTGTAGTTCTTTGCGGCAAACTTGGCTGTGGCAAGAGCGCAACTGGCAATAGCATCGTTGGAAGAGAAGCATTTGTATCAGAGTACTCCCATGCTAGTGTGACCAGTACTTGTCAATTGGCCAGCACCGCGC TAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGGATTATTTGAAA TGACCATTACATC TGAGGATGCCGGTAAAGAAATTGTTAAGTGTA TGAGTA TGGCCAAGGAT GGGATACATGCAGTGC TGAT GGTTTTTTCTGCCACATC TCGTTTTACTCGAGAAGATTCCAGTACCATTGAGACAATTAAAGAGTTTTTCGGAGAGAAGATTGTTGATCACATGATACTAGTATTTACTTATGGAGATTTAGTTGGTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGNNNNNTNTTGAGCTATGCAAAAACAGAGTTGNTCTCTTTGATNNTATGAnnnn ] [+] EMBL CF303351 [ CGTATTCGCAGGCTCATCGACTTCTCGTCTTCCTCTCCTCTCTCTCGTTTCGATTCCCCCGCGAGAGATTCGATCCAACCAAACCCACCCGCTACCAGCGTCTTCTCCTTCGCGAGCAAGTTTTTTGAGAGTTTGCAATGGGTTGAAGCGAATACGATGATGACTGGGAGTTGCCTAGCGCTGACATCACTGTAGTTCTTTGCGGCAAACTTGGCTGTGGCAAGAGCGCAACTGGCAATAGCATCGTTGGAAGAGAAGCATTTGTATCAGAGTACTCCCATGCTAGTGTGACCAGTACTTGTCAATTGGCCAGCACCGCGC TAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGGATTATTTGAAA TGACCATTACATC TGAGGATGCCGGTAAAGAAATTGTTAAGTGTA TGAGTA TGGCCAAGGAT GGGATACATGCAGTGC TGAT GGTTTTTTCTGCCACATC TCGTTTTACTCGAGAAGATTCCAGTACCATTGAGACAATTAAAGAGTTTTTCGGAGAGAAGATTGTTGATCACATGATACTAGTATTTA ] [+] EMBL CB674581 [ ATTCGCAGGCTCATCGACTTCTCGTCTTCCTCTCCTCTCTCTCGTTTCGATTCCCCCGCGAGAGATTCGATCCAACCAAACCCACCCGCTACCAGCGTCTTCTCCTTCGCGAGCAAGTTTTTTGAGAGTTTGCAATGGGAGGAAGCGAATACGATGATGACTGGGAGTTGCCTAGCGCTGACATCACTGTAGTTCTTTGCGGCAAACTTGGCTGTGGCAAGAGCGCAACTGGCAATAGCATCGTTGGAAGAGAAGCATTTGTATCAGAGTACTCCCATGCTAGTGTGACCAGTACTTGTCAATTGGCCAGCACCGCGC TAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGGATTATTTGAAA TGACCATTACATC TGAGGATGCCGGTAAAGAAATTGTTAAGTGTA TGAGTA TGGCCAAGGAT GGGATACATGCAGTGC TGAT GGTTTTTTCTGCCACATC TCGTTTTACTCGAGAAGATTCCAGTACCATTGAGACAATTAAAGAGTTTTTCGGAGAGAAGATTGTTGATCACATGATACTAGTATTTACTTATGGAGATTTAGTTGGTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGAAGCAACTTGAAAATTTGCTTGATGTTGTTGACTCTGTGAATACAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGG ] [+] EMBL AK068385 [ AGGCTCATCGACTTCTCGTCTTCCTCTCCTCTCTCTCGTTTCGATTCCCCCGCGAGAGATTCGATCCAACCAAACCCACCCGCTACCAGCGTCTTCTCCTTCGCGAGCAAGTTTTTTGAGGGTTTGCAATGGGAGGAAGCGAATACGATGATGACTGGGAGTTGCCTAGCGCTGACATCACTGTAGTTCTTTGCGGCAAACTTGGCTGTGGCAAGAGCGCAACTGGCAATAGCATCGTTGGAAGAGAAGCATTTGTATCAGAGTACTCCCATGCTAGTGTGACCAGTACTTGTCAATTGGCCAGCACCGCGC TAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGGATTATTTGAAA TGACCATTACATC TGAGGATGCCGGTAAAGAAATTGTTAAGTGTA TGAGTA TGGCCAAGGAT GGGATACATGCAGTGC TGAT GGTTTTTTCTGCCACATC TCGTTTTACTCGAGAAGATTCCAGTACCATTGAGACAATTAAAGAGTTTTTCGGAGAGAAGATTGTTGATCACATGATACTAGTATTTACTTATGGAGATTTAGTTGGTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGAAGCAACTTGAAAATTTGCTTGATGTTGTTGACTCTGTGAATACAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACAT TACCAACATGGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGGAAGAACAGAATGCAAGGCTAGAAGCAGAGAGGTTGGCAGCTGAAGCTAGGCTCCGATCAGATGAGGAGATCCGCAAGCTCAAAAAGCGCCTCGAGAAGGCCCAACAAGAAAATGAGGAATTCCGAAAGATGGCTTCTCAACACAAGTGTTCTATTCTATGAGTAGCTTTCTCCTAGGATCAAGCTGCTGCCATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTGCTCTAGGCTATGTGGTTGACATAAAACTTTTGCTACTGGGCTATCTCATATCTGTAAATATACAGGTATTTGGATTTTTAATGTCCAAGGATT ] [+] EMBL C26149 [ CCAACCAAACCCACCCGCTACCAGCGTCTTCTCCTTCGCGAGCAAGTTTTTTGAGAGTTTGCAATGGGAGGAAGCGAATACGATGATGACTGGGAGTTGCCTAGCGCTGACATCACTGTAGTTCTTTGCGGCAAACTTGGCTGTGGCAAGAGCGCAACTGGCAATAGCATCGTTGGAAGAGAAGCATTTGTATCAGAGTACTCCCATGCTAGTGTGACCAGTACTTGTCAATTGGCCAGCACCGCGCTTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGGATTATTTGAAATTGACCATTACATCTTGAGGATGCCGGTAAAGAAATTNTTAAGTGTATTGAGTATTGGCCAAGGATGGGGATACATGCAGTGCTTGATGGGTTTTTTCTGCCACATCTTCGTTTTACTTGAGAAGA ] [+] EMBL CF327663 [ TGTGACCAGTACTTGTCAATTGGCAAAAACCGCGC TAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGGATTATTTGAAA TGACCATTACATC CGAGGATGCCGGTTAATAAATTGTTAACTGTA TGAGTA TGTCCAAGGAT GGGATTCATGCAGTGC TGAT GGTTTTTTCTGCCACATG TGGTTTTACTCG ] [+] EMBL CF312188 [ TACATC TGAGGATGCCGGTAAAGAAATTGTTAAGTGTA TGAGTA TGGCCAAGGAT GGGATACATGCAGTGC TGAT GGTTTTTTCTGCCACATC TCGTTTTACTCGAGAAGATTCCAGTACCATTGAGACAATTAAAGAGTTTTTCGGAGAGAAGATTGTTGATCACATGATACTAGTATTTACTTATGGAGATTTAGTTGGTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGAAGCAACTTGAAAATTTGCTTGATGTTGTTGACTCTGTGAATACAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACAT TACCAACATGGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGC ] [+] EMBL CF312281 [ TACATC TGAGGATGCCGGTAAAGAAATTGTTAAGTGTA TGAGTA TGGCCAAGGAT GGGATACATGCAGTGC TGAT GGTTTTTTCTGCCACATC TCGTTTTACTCGAGAAGATTCCAGTACCATTGAGACAATTAAAGAGTTTTTCGGAGAGAAGATTGTTGATCACATGATACTAGTATTTACTTATGGAGATTTAGTTGGTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGAAGCAACTTGAAAATTTGCTTGATGTTGTTGACTCTGTGAATACAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATNTACCAACATGGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGGAAGAAC ] [-] EMBL CB674582 [ TTTACTTATGGAGATTTAGTTGGTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGAAGCAACTTGAAAATTTGCTTGATGTTGTTGACTCTGTGAATACAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACAT TACCAACATGGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGGAAGAACAGAATGCAAGGCTAGAAGCAGAGAGGTTGGCAGCTGAAGCTAGGCTCCGATCAGATGAGGAGATCCGCAAGCTCAAAAAGCGCCTCGAGAAGGCCCAACAAGAAAATGAGGAATTCCGAAAGATGGCTTCTCAACACAAGTGTTCTATTCTATGAGTAGCTTTCTCCTAGGATCAAGCTGCTGCCATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTGCTCTAGGCTATGTGGTTGACATAAAACTTTTGCTACTGGGCTATCTCATATCTGTAAATATACAGGTATTTGGATTTTTAATGTCCAAGGATTTTGACTATCAAAAAAAAAAAGA] consensusID : consensus_14692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 787 fasta sequence [CCAGAGTTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGANNCAACTTGAAAATTTNCTTGATGTTGTTGACTCTGTGAATNCAAATAATGGAGG-AAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGGAAGCACATGCCAGAGAACNGGAGGTGCATGATGCTATTGGATATNCAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGGAAGAACAGAATGCAAGGCTAGAAGCAGAGAGGTTGGCAGCTGAAGCTAGGCTCCGATCAGATGAGGAGATCCGCAAGCTCAAAAAGCGCCTCGAGAAGGCCCAACAAGAAAATGAGGAATTCCGAAAGATGGCTTCTCAACACAAGTGTTCTATTCTATGAGTAGCTTTCTCCTAGGATCAAGCTGCTGCCATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTGCTCTAGGCTATGTGGTTGACATAAAACTTTTGCTACTGGGCTATCTCATATCTGTAAATATACAGGTATTTGGATTTTTAATGTCCAAGGATTTTGACTATCATCCCTGCTAGTTCATCCTTGTGAAAAGTGAATTTTGGTGATCGTCTTCTTCTGAAAAAAATCGTTTCCACAAGTGTTGCAGGCAAGGGATCAATGATCCCCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU100668 [CCAGAGTTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGANNCAACTTGAAAATTTNCTTGATGTTGTTGACTCTGTGAATNCAAATAATGGAGG AAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGGAAGCACATGCCAGAGAACNGGAGGTGCATGATGCTATTGGATATNCAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGGAAGAACAGAATGCAAGGCTAGAAGCAGAGAGGTTGGCAGCTGAAGCTAGGCTCCGATCAGATGAGGAGATCCGCAAGCTCAAAAAGCGCCTCGAGAAGGCCCAACAAGAAAATGAGGAATTCCGAAAGATGGCTTCTCAACACAAGTGTTCTATTCTATGAGTAGCTTTCTCCTAGGATCAAGCTGCTGCCATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTGCTCTAGGCTATGTGGTTGACATAAAACTTTTGCTACTGGGCTATCTCATATCTGTAAATATACAGGTATTTGGATTTTTAATGTCCAAGGATTTTGACTATCATCCCTGCTAGTTCATCCTTGTGAAAAaaaaaaa ] [-] EMBL CF312189 [ TTGACTCTGTGAATACAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGG GGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGGAAGAACAGAATGCAAGGCTAGAAGCAGAGAGGTTGGCAGCTGAAGCTAGGCTCCGATCAGATGAGGAGATCCGCAAGCTCAAAAAGCGCCTCGAGAAGGCCCAACAAGAAAATGAGGAATTCCGAAAGATGGCTTCTCAACACAAGTGTTCTATTCTATGAGTAGCTTTCTCCTAGGATCAAGCTGCTGCCATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTGCTCTAGGCTATGTGGTTGACATAAAACTTTTGCTACTGGGCTATCTCATATCTGTAAATATACAGGTATTTGGATTTTTAATGTCCAAGGGTTTTGACTATCATCCCTGCTAGTTCATCCTTGTGAAAAGTGAATTTTGGTGATCGTCTTCTTCTGAAAAAA ] [-] EMBL CF312397 [ ACAGCTTGCAAACATTACCAACATGGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGGAAGAACAGAATGCAAGGCTAGAAGCAGAGAGGTTGGCAGCTGAAGCTAGGCTCCGATCAGATGAGGAGATCCGCAAGCTCAAAAAGCGCCTCGAGAAGGCCCAACAAGAAAATGAGGAATTCCGAAAGATGGCTTCTCAACACAAGTGTTCTATTCTATGAGTAGCTTTCTCCTAGGATCAAGCTGCCGCCATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTGCTTTAGGCTATGTGGTTGACATAAAACTTTTGCTACTGGGCTATCTCATATCTGTAAATATACAGGTATTTGGATTTTTAATGTCCAAGGATTTTGACTATCATCCCTGCTAGTTCATCCTTGTGAAAAGTGAATTTTGGTGATCGTCTTCTTCTGAAAATGATCGTTTCCACAAGTGTTGCAGGCAAGGGATCAATGATCCCCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI811377 [ GCTAGAAGCAGAGAGGTTGGCAGCTGAAGCTAGGCTCCGATCAGATGAGGAGATCTGCAAGCTCAAAAAGCGCCTCGAGAAGGCCC ACAAGAAAATGAGGAATTCCGAAAGATGGCTTCTCAACACAAGTGTTCTATTCTATGAGTAGCTTTCTCCTAGGATCAAGCTGCTGCCATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTG TAGGCTACGTGGTTGACATAAAACTTTTGCTACTGGGCTATCTCATATCTGTAAATATACAGGTATTTGGATTTTTAATGTCCAAGGATTTTGACTATCATCCCTGCTAaaaaa ] [-] EMBL D42963 [ aaCAGAGAGGTTGGCAGCTGAANCAAGGCTNCGANTAAATTAGGAGATCCGCAAGCTCAAAAAGCGCCNCGAGAAGGCCCAAAAAGAAAATGNGGAATTCCGAAAGATGGCTTCTCAACAAAAGTGTTCTANNCTATGAGTAGCTTTCTCCTAGGATCAAGCTGCTGCCATGGTTGAATGCNCCGTGCATTGTTAATAGAGTTCAGAACAGTGCTCTAGGCTATGTGGTTGACATAAAACTTTTGCTACTGGNCTATCTCATATCTGTAAATATACNGGTATTTGGATTT ] consensusID : consensus_14692#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [GGAGGANAAAGCTGTAAGTAGTCACTGTTGTACAAGCTGCAACAGCAACTCATGGTAAGAACAGAATGTCANAGGCTAGAAGTCAGAGAGGTTGGCAGCTGAAGTCTGAGGCTCCGATCAGATGGAGGAGATCTGGCAAGCTGCAAAAAGCGCCTGTCGAGAAGGCCCAACAGAGAAAATGGAGGAATTCACGAAAGATGGCTGTGCTGCGAACACCNATAGTGGTTGCTGATTGCTATGGAGTGAGCTTTGCTCCTAGGATGCAAGCTGCTGGCCATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTGTAGGCTACAGTGGTTGACATAAAACTTTTGCTACTGGGCTATGCTCATGATCTGTAAATATACAGGTATTTGGGATTTTTAATGTCCAAGGATTTTGACTATCATCCCTGCTAGTTCATCCGTGTGAAAAGTGAATTTTGGTGATCGTCTTCTTCNGAAAAAAAAAA] [+] EMBL BQ907619 [GGAGGANAAAGCTGTAAGTAGTCACTGTTGTACAAGCTGCAACAGCAACTCATGGTAAGAACAGAATGTCANAGGCTAGAAGTCAGAGAGGTTGGCAGCTGAAGTCTGAGGCTCCGATCAGATGGAGGAGATCTGGCAAGCTGCAAAAAGCGCCTGTCGAGAAGGCCCAACAGAGAAAATGGAGGAATTCACGAAAGATGGCTGTGCTGCGAACACCNATAGTGGTTGCTGATTGCTATGGAGTGAGCTTTGCTCCTAGGATGCAAGCTGCTGGCCATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTGTAGGCTACAGTGGTTGACATAAAACTTTTGCTACTGGGCTATGCTCATGATCTGTAAATATACAGGTATTTGGGATTTTTAATGTCCAAGGATTTTGACTATCATCCCTGCTAGTTCATCCGTGTGAAAAGTGAATTTTGGTGATCGTCTTCTTCNGAAAAAAAAAA] consensusID : consensus_14692#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [TGTTCTATTCCTATGAGTANCTTTCTCCTAGGATCAACTCTCCCATGTTGAATCCCGCCTTTTAATAGAGTTCNGACATGTAGCTACGTGTTGACATAAAACTTTTGCTACTGGCTATCTCATATCTGTAAATATACAGTATTGGGATTTTTAATGGTCCAAGATTTTGACTATCATCCTGTTAGTTCACCCGTGTGAAAAGTGAATTTTGGTGATCTCTTCTTCGGAAAA] [+] EMBL BM420749 [TGTTCTATTCCTATGAGTANCTTTCTCCTAGGATCAACTCTCCCATGTTGAATCCCGCCTTTTAATAGAGTTCNGACATGTAGCTACGTGTTGACATAAAACTTTTGCTACTGGCTATCTCATATCTGTAAATATACAGTATTGGGATTTTTAATGGTCCAAGATTTTGACTATCATCCTGTTAGTTCACCCGTGTGAAAAGTGAATTTTGGTGATCTCTTCTTCGGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ------------------------------------------------------------ consensus_14692#0 AACCCCCCCGTATTCGCAGGCTCATCGACTTCTCGTCTTCCTCTCCTCTCTCTCGTTTCG 60 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ------------------------------------------------------------ consensus_14692#0 ATTCCCCCGCGAGAGATTCGATCCAACCAAACCCACCCGCTACCAGCGTCTTCTCCTTCG 120 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ------------------------------------------------------------ consensus_14692#0 CGAGCAAGTTTTTTGAGAGTTTGCAATGGGAGGAAGCGAATACGATGATGACTGGGAGTT 180 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ------------------------------------------------------------ consensus_14692#0 GCCTAGCGCTGACATCACTGTAGTTCTTTGCGGCAAACTTGGCTGTGGCAAGAGCGCAAC 240 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ------------------------------------------------------------ consensus_14692#0 TGGCAATAGCATCGTTGGAAGAGAAGCATTTGTATCAGAGTACTCCCATGCTAGTGTGAC 300 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ------------------------------------------------------------ consensus_14692#0 CAGTACTTGTCAATTGGCCAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGA 360 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ------------------------------------------------------------ consensus_14692#0 TACGCCAGGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAA 420 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ------------------------------------------------------------ consensus_14692#0 GTGTATGAGTATGGCCAAGGATGGGATACATGCAGTGCTGATGGTTTTTTCTGCCACATC 480 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ------------------------------------------------------------ consensus_14692#0 TCGTTTTACTCGAGAAGATTCCAGTACCATTGAGACAATTAAAGAGTTTTTCGGAGAGAA 540 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ------------------------------------------------------------ consensus_14692#0 GATTGTTGATCACATGATACTAGTATTTACTTATGGAGATTTAGTTGGTGAAAATAAATT 600 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ----------------------------------------------------------CC 2 consensus_14692#0 GAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGAAAACTGTTGAGCTATGCAAAAA 660 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 AGAGTTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGANNCAACTTGA 62 consensus_14692#0 CAGAGTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGAAGCAACTTGA 720 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 AAATTTNCTTGATGTTGTTGACTCTGTGAATNCAAATAATGGAGGAA-GCCATTTTCAGA 121 consensus_14692#0 AAATTTGCTTGATGTTGTTGACTCTGTGAATACAAATAATGGAGGAAAGCCATTTTCAGA 780 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 TCAAATGCTCGCTTGCATTAAGGAAGCACATGCCAGAGAACNGGAGGTGCATGATGCTAT 181 consensus_14692#0 TCAAATGCTCGCTTGCATTAAGGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTAT 840 consensus_14692#2 ------------------------------------------------------------ consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 TGGATATNCAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGA 241 consensus_14692#0 TGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGA 900 consensus_14692#2 ------------------------GGAGGANAAAGCTGTAAGTAGTCACTGTTGTACAAG 36 consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 ACAGCTTGCAAACATTACCAACATGGTGGAGGAAAAGCTGAATA-TCACTGTTG-ACAAG 299 consensus_14692#0 ACAGCTTGCAAACATTACCAACATGGTGGAGGAAAAGCTGAATA-TCACTGTTG-ACAAG 958 consensus_14692#2 CTGCAACAGCAACTCATGGTAAGAACAGAATGTCANAGGCTAGAAGTCAGAGAGGTTGGC 96 consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 CTGCAACAGCAACTCATGG-AAGAACAGAATGC--AAGGCTAGAAG-CAGAGAGGTTGGC 355 consensus_14692#0 CTGCAACAGCAACTCATGG-AAGAACAGAATGC--AAGGCTAGAAG-CAGAGAGGTTGGC 1014 consensus_14692#2 AGCTGAAGTCTGAGGCTCCGATCAGATGGAGGAGATCTGGCAAGCTGCAAAAAGCGCCTG 156 consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 AGCTGAAGCT--AGGCTCCGATCAGATGAGGAGATCC--GCAAGCT-CAAAAAGCGCC-- 408 consensus_14692#0 AGCTGAAGCT--AGGCTCCGATCAGATGAGGAGATCC--GCAAGCT-CAAAAAGCGCC-- 1067 consensus_14692#2 TCGAGAAGGCCCAACAGAGAAAATGGAGGAATTCACGAAAGATGGCTGTGCTGCGAACAC 216 consensus_14692#3 ------------------------------------------------------------ consensus_14692#1 TCGAGAAGGCCCAACAAGAAAA--TGAGGAATTC-CGAAAGATGGCTTC----------T 455 consensus_14692#0 TCGAGAAGGCCCAACAAGAAAA--TGAGGAATTC-CGAAAGATGGCTTC----------T 1114 consensus_14692#2 CNATAGTGGTTGCTGATTGCTATGGAGTGAGCTTTGCTCCTAGGATGCAAGCTGCTGGCC 276 consensus_14692#3 ---------TGTTCTATTCCTATG-AGT-ANCTTT-CTCCTAGGAT-CAACTCTC---CC 44 consensus_14692#1 CAACACAAGTGTTCTATT-CTATG-AGT-AGCTTT-CTCCTAGGAT-CAAGCTGCTG-CC 509 consensus_14692#0 CAACACAAGTGTTCTATT-CTATG-AGT-AGCTTT-CTCCTAGGAT-CAAGCTGCTG-CC 1168 * *** ***** *** * **** ********** *** * ** consensus_14692#2 ATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTG---TAGGCTACAGTGG 333 consensus_14692#3 ATG-TTGAATCCCGC-----CTTTTAATAGAGTTCNGAC--ATG---TAG-CTACGT--G 90 consensus_14692#1 ATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTGCTCTAGGCTATGT-GG 568 consensus_14692#0 ATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAGAACAGTGCTCTAGGCTATGT-GG 1227 *** ****** * * * ************ ** ** *** *** * consensus_14692#2 TTGACATAAAACTTTTGCTACTGGGCTATGCTCATGATCTGTAAATATACAGGTATTTGG 393 consensus_14692#3 TTGACATAAAACTTTTGCTACTGG-CTAT-CTCAT-ATCTGTAAATATACAG-TATT-GG 145 consensus_14692#1 TTGACATAAAACTTTTGCTACTGGGCTAT-CTCAT-ATCTGTAAATATACAGGTATT-TG 625 consensus_14692#0 TTGACATAAAACTTTTGCTACTGGGCTAT-CTCAT-ATCTGTAAATATACAGGTATT-TG 1284 ************************ **** ***** **************** **** * consensus_14692#2 GATTTTTAATGTCCAAGGATTTTGACTATCATCCCTGCTAGTTCATCCGTGTGAAAAGTG 453 consensus_14692#3 GATTTTTAATGGTCCAAGATTTTGACTATCATCC-TGTTAGTTCACCCGTGTGAAAAGTG 204 consensus_14692#1 GATTTTTAATGTCCAAGGATTTTGACTATCATCCCTGCTAGTTCATCCTTGTGAAAAGTG 685 consensus_14692#0 GATTTTTAATGTCCAAGGATTTTGACTATCAAAAAAAAAAAGA----------------- 1327 *********** * * ************** * consensus_14692#2 AATTTTGGTGATCGTCTTCTTCNGAAAAAAAAAA-------------------------- 487 consensus_14692#3 AATTTTGGTGATC-TCTTCTTCGGAAAA-------------------------------- 231 consensus_14692#1 AATTTTGGTGATCGTCTTCTTCTGAAAAAAATCGTTTCCACAAGTGTTGCAGGCAAGGGA 745 consensus_14692#0 ------------------------------------------------------------ consensus_14692#2 ------------------------------------------ consensus_14692#3 ------------------------------------------ consensus_14692#1 TCAATGATCCCCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAA 787 consensus_14692#0 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||