cluster # 1472

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Oryza sativa
cluster # 1472 cluster # 1472 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1472#0 length = 522 sequences # 1

consensus_1472#1 length = 493 sequences # 1

consensusID : consensus_1472#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [GGCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTACACATATATTAATTTCATTATTGCACGCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAGAGTGCAGACTAGGATATTATTCATGCCGCAAAGCTAGATCTTCAGGTGCAGTCGTTCAAATCGAGGTGCTTTCAGCCTGCAATCGCGGGCGGGGGGCACCTGTACGCGGGGAAGGGCACCTTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAAAGCTTCACCTCGTCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTGTCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGGGCCCTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAACTGGTTATCGATGTGTTTGCAGCCCCCCTTGTCTCGTCCTCT]

[+] EMBL CA760097             [GGCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTACACATATATTAATTTCATTATTGCACGCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAGAGTGCAGACTAGGATATTATTCATGCCGCAAAGCTAGATCTTCAGGTGCAGTCGTTCAAATCGAGGTGCTTTCAGCCTGCAATCGCGGGCGGGGGGCACCTGTACGCGGGGAAGGGCACCTTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAAAGCTTCACCTCGTCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTGTCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGGGCCCTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAACTGGTTATCGATGTGTTTGCAGCCCCCCTTGTCTCGTCCTCT]




>consensus_1472#0
GGCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTACACATATATTAATTTCATTATTGCAC
GCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAG
AGTGCAGACTAGGATATTATTCATGCCGCAAAGCTAGATCTTCAGGTGCAGTCGTTCAAA
TCGAGGTGCTTTCAGCCTGCAATCGCGGGCGGGGGGCACCTGTACGCGGGGAAGGGCACC
TTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAAAGCTTCACCTCG
TCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTG
TCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGGGCC
CTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAA
CTGGTTATCGATGTGTTTGCAGCCCCCCTTGTCTCGTCCTCT

consensusID : consensus_1472#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence

                              [TGTCATTCATTACCCCCAAATATGCTATTACACATATATTAATTACATTATTGCACGCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAGAGTGCAGACTAGGATATTATTCATGCCGCATAGCTAGATCTTCAGGTGCAGTCGTTCAGATCGAGGTGCTTTCAGCCTGCAATCGCGGGCTGGGGGCACCTGTACGCGGGGAAGGGCACCTTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAGAGCTTCACCTCGTCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTGTCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGCGCCCTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAACTGGTTATCGATGTGTT]

[-] EMBL AK112054             [TGTCATTCATTACCCCCAAATATGCTATTACACATATATTAATTACATTATTGCACGCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAGAGTGCAGACTAGGATATTATTCATGCCGCATAGCTAGATCTTCAGGTGCAGTCGTTCAGATCGAGGTGCTTTCAGCCTGCAATCGCGGGCTGGGGGCACCTGTACGCGGGGAAGGGCACCTTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAGAGCTTCACCTCGTCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTGTCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGCGCCCTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAACTGGTTATCGATGTGTT]




>consensus_1472#1
TGTCATTCATTACCCCCAAATATGCTATTACACATATATTAATTACATTATTGCACGCGT
GCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAGAGTG
CAGACTAGGATATTATTCATGCCGCATAGCTAGATCTTCAGGTGCAGTCGTTCAGATCGA
GGTGCTTTCAGCCTGCAATCGCGGGCTGGGGGCACCTGTACGCGGGGAAGGGCACCTTCC
CGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAGAGCTTCACCTCGTCGG
CGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTGTCGT
ACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGCGCCCTCG
ACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAACTGG
TTATCGATGTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1472#0      GGCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTACACATATATTAATTTCATTATTGCAC 60
consensus_1472#1      ----TGTCATTCATTACCCCCAAATATGCTATTACACATATATTAATTACATTATTGCAC 56
                            *  **  **         * *  * ***************** ***********

consensus_1472#0      GCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAG 120
consensus_1472#1      GCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAG 116
                      ************************************************************

consensus_1472#0      AGTGCAGACTAGGATATTATTCATGCCGCAAAGCTAGATCTTCAGGTGCAGTCGTTCAAA 180
consensus_1472#1      AGTGCAGACTAGGATATTATTCATGCCGCATAGCTAGATCTTCAGGTGCAGTCGTTCAGA 176
                      ****************************** *************************** *

consensus_1472#0      TCGAGGTGCTTTCAGCCTGCAATCGCGGGCGGGGGGCACCTGTACGCGGGGAAGGGCACC 240
consensus_1472#1      TCGAGGTGCTTTCAGCCTGCAATCGCGGGCTGGGGGCACCTGTACGCGGGGAAGGGCACC 236
                      ****************************** *****************************

consensus_1472#0      TTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAAAGCTTCACCTCG 300
consensus_1472#1      TTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAGAGCTTCACCTCG 296
                      *********************************************** ************

consensus_1472#0      TCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTG 360
consensus_1472#1      TCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTG 356
                      ************************************************************

consensus_1472#0      TCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGGGCC 420
consensus_1472#1      TCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGCGCC 416
                      ******************************************************** ***

consensus_1472#0      CTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAA 480
consensus_1472#1      CTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAA 476
                      ************************************************************

consensus_1472#0      CTGGTTATCGATGTGTTTGCAGCCCCCCTTGTCTCGTCCTCT 522
consensus_1472#1      CTGGTTATCGATGTGTT------------------------- 493
                      *****************