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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1469 fasta sequence
[CGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGC-TGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCCGCGCCCGCCGTCGCTGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGC-TGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAAGC-TTGAAAATGGGAAGAA-GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATG-CAAACA-AAGAAGTGTATGCATCGATTTT-TACTTC-TTCCA-AGAAGTCAGATTT-CAAGGAGACATACTCAT-GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC-TGCACTGATTTGCTTCATAGCA-TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA-AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATATCTAAGGGGATTTACCAAAAAGTAAGTTATTATTTTGACTAAAAA]
[+] EMBL AK102112 [CGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGC TGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCCGCGCCCGCCGTCGCTGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGC TGCCGCTGCCGTGATGGCAAGGGGTGCTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATATCTAAGGGGATTTACCAAAAAGTAAGTTAT ]
[+] EMBL C74439 [ GCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGNCGCNCGCTCCTGCTTGTCCGCGCCCGTAGGGTNGCTTCCGCCGTNGGG ]
[+] EMBL AU166849 [ ACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGC TGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTC ]
[+] EMBL CB649081 [ CCCTACCCCTGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGC TGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACG ]
[-] EMBL CB652658 [ ccGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGC TGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTAATGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTT TTAAGGAGCTTGTTGGAATAAAGTTG ]
[-] EMBL CB631145 [ GGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGC TGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCGGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTAATTTGTATATCTAAGGAGGGTTACCAAAAAGTAAGTTATT ]
[+] EMBL BI805617 [ GTGGGAAATGGGCTAANTGGGAGTAAGCATGC TGCCGCTCCCGTGAT GCAGGGGGT CTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATGCCAAACC AAGAAGTGTATGCATCGATTTT TACTTC TTCC AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCCTTGTCAAGGAAGCCAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACC TTAACA AGC ATACCAGCTCTGAAATCTTCTGT ]
[+] EMBL BM419962 [ AGTGGGAGTAAGCATGCGTGCC CTGCCGTGATGGCAGGGGGT CTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCGGCATATG CAAAC AAGAAGTGTATGCATCGATTTTGTACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGC CTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGC AAGT TCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCANTAACA AGC ATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGT ]
[+] EMBL BM419541 [ GCATGC TGCCGCT CCGTGATGCCAGGGGGTGCTGAGAAGCTTTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCGGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATAaaaaa ]
[+] EMBL AU029706 [ tnCTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGNCCATGCACCAGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTTCCAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAAAAAAaaaa ]
[+] EMBL BQ906811 [ C TTGAAAATGGGAAGAATGGGGGAGGCTCCCTCTTTGAAACGGTTCAAGGCTGGAGACCATGCACCGGCATATG CCAACN AAGAAGTGTATGCATCGATTTT TACTTCGTTCCA AGAAGTCAGATTT CAAGGAGACATACTCATGGCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCCGTGCACTGATTTGCTTCATAGCACTGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCCAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGC ATACCAGCTNTGAAATNTTCTGTA CAGCTTGTTGGAATAAAGTTGCTTAaaaa ]
[+] EMBL AU166850 [ AGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATATCTAAGGGGATTTACCAAAAAGTAAGTTATTATTTTGACTAAAAA]
[+] EMBL BI796306 [ G CAAACACAAGAAGTGTATGCATCGATTTT TACTTC TTCCACAGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCCTTGTCAAGGAAGCCAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACACAGCCATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATAaaaaaaaaa ]
consensusID : consensus_14731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1455 fasta sequence
[TTCCTCGAGCACTGTTGGCCTACTGGCTCTCTCTCTTTCTCGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGCTGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCCGCGCCCGCCGTCGCCGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAAGCTTGAAAATGGGAAGAAGGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATGCAAACAAAGAAGTGTATGCATCGATTTTTACTTCTTCCAAGAAGTCAGATTTCAAGGAGACATACTCATGCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCCTGCACTGATTTGCTTCATAGCATGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACAAGCAATACCAGCTCTGAAATCTTCTGTAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK109370 [TTCCTCGAGCACTGTTGGCCTACTGGCTCTCTCTCTTTCTCGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGCTGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCCGCGCCTGCCGTCGCCGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAAGCTTGAAAATGGGAAGAAGGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATGCAAACAAAGAAGTGTATGCATCGATTTTTACTTCTTCCAAGAAGTCAGATTTCAAGGAGACATACTCATGCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCCTGCACTGATTTGCTTCATAGCATGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACAAGCAATACCAGCTCTGAAATCTTCTGTAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL CB631144 [ TCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGCTGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCACTCTCCGGCGAGCCGCTTGCCGCGCCCGCCGTCGCCGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTNCACG ]
[+] EMBL CB652657 [ CCGCGGCGGGGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCCGCGCCCGCCGTCGCCGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGC ]
consensusID : consensus_14731#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[AGTGCCCGGTCACCGGGCTNCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTNTGGCCATGTGCTTAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATTCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAACTTTGAAAATGGGGAAGAAGGGGGAGGCTCCCTCTTTTNAAGCCGGTTCCAAAGGCTTTGGAGGACCCATTGCACCCAGCATATTGCAAAACCAAAGGAAGGTTTAATTCCATCCGATTTTTTNACCTTTCCTTTCCCCAGGAAGGTCAAATT]
[+] EMBL C28069 [AGTGCCCGGTCACCGGGCTNCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTNTGGCCATGTGCTTAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATTCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAACTTTGAAAATGGGGAAGAAGGGGGAGGCTCCCTCTTTTNAAGCCGGTTCCAAAGGCTTTGGAGGACCCATTGCACCCAGCATATTGCAAAACCAAAGGAAGGTTTAATTCCATCCGATTTTTTNACCTTTCCTTTCCCCAGGAAGGTCAAATT]
consensusID : consensus_14731#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence
[ATTTGCTTCCATAGCATGGTTCCCCTGCAAGTTTCTTCATTGTAATTTTAGTTNCCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCNCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATNCCATTAACAAGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C98797 [ATTTGCTTCCATAGCATGGTTCCCCTGCAAGTTTCTTCATTGTAATTTTAGTTNCCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCNCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATNCCATTAACAAGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14731#0 CGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAAC 60
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 ------------------------------------------------------------
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 CCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTG 120
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 ------------------------------------------------------------
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 CTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCG 180
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 ------------------------------------------------------------
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 GTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTC 240
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 ------------------------------------------------------------
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 ACCGCCGATGGCCGCCCGCTCCTGCTGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGT 300
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 ------------------------------------------------------------
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 TCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGC 360
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 ------------------------------------------------------------
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 GCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGAC 420
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 ------------------------------------------------------------
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 CCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCC 480
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 ------------------------------------------------------------
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 GCGCCCGCCGTCGCTGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCG 540
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 ----------------------TTCCTCGAGCACTGTTGGCCTACTGGCTCTCTCTCTTT 38
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 CTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATC 600
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 CTCGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAA 98
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 CCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAG 660
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 ACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGG 158
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 TGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGT 720
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 TGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCC 218
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 GGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGC 780
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 CGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACC 278
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 CATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCG 840
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 TCACCGCCGATGGCCGCCCGCTCCTGCTGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGG 338
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 GCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAG 900
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 GTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGG 398
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 GTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGCAGGGGGTGCT 960
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 GCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCG 458
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 GAGAAGCTTGAAAATGGGAAGAAGGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGA 1020
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 ACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTG 518
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 GACCATGCACCAGCATATGCAAACAAAGAAGTGTATGCATCGATTTTTACTTCTTCCAAG 1080
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 CCGCGCCCGCCGTCGCCGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGG 578
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 AAGTCAGATTTCAAGGAGACATACTCATGCCGGTCACTTCCCCTTGGAAGGAACTGAAGC 1140
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 CGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGA 638
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 GATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCCTGCACTGATTTGCTTC- 1199
consensus_14731#3 --------------------------------------------------ATTTGCTTCC 10
consensus_14731#1 TCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCC 698
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 ATAGCATGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGC 1259
consensus_14731#3 ATAGCATGGTTCCCCTGCAAGTTTCTTCATTGTAATTTTAGTTNCCGGTGTTCTTCATGC 70
consensus_14731#1 AGTGCCCGGTCACC----GGGCTC---GATTTCAATGGGAAGTACCAAT--TCCTCGCGC 749
consensus_14731#2 AGTGCCCGGTCACC----GGGCTNC--GATTTCAATGGGAAGTACCAAT--TCCTCGCGC 52
* ** *** * * * *** *** * * * * ** ** **
consensus_14731#0 TTTG-ATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAG-TGTCGGAGT 1317
consensus_14731#3 TTTG-ATTACTGATGTGGGGCNCTGTGTTTCCATTGTCAAGGAAGCAAAG-TGTCGGAGT 128
consensus_14731#1 TTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGT 809
consensus_14731#2 TTCGCAAGTNTGGCCATGTGCTTAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGT 112
** * * ** * ** * ** * ******* * *** **** **
consensus_14731#0 ATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACAAGCAATACCAGCTCT 1377
consensus_14731#3 ATTTGAAAGATGTGTGAAATATGTAATAGTTTGATNCCATTAACAAGCAATACCAGCTCT 188
consensus_14731#1 GCTTG------GTATGCCATA---AGGAGTTTGATGAGGCGGACAAG--ATGCC-GCTCA 857
consensus_14731#2 GCTTG------GTATTCCATA---AGGAGTTTGATGAGGCGGACAAG--ATGCC-GCTCA 160
*** ** * *** * ******** ***** ** ** ****
consensus_14731#0 GAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATATCTAAGGGGATTT 1437
consensus_14731#3 GAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTNTAAAAAAAAAAAAAA 248
consensus_14731#1 ACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGG 917
consensus_14731#2 ACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGG 220
* * * ** *** * * * * * ** ** * *
consensus_14731#0 ACCAAAAAGTAAGTTATTATTTTGACTAAAAA---------------------------- 1469
consensus_14731#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------- 289
consensus_14731#1 TGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCG 977
consensus_14731#2 TGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCG 280
* ** * * * ***
consensus_14731#0 ------------------------------------------------------------
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 CTGCCGTGATGGCAGGGGGTGCTGAGAAGCTTGAAAATGGG-AAGAAGGGGGAGGCTCCC 1036
consensus_14731#2 CTGCCGTGATGGCAGGGGGTGCTGAGAACTTTGAAAATGGGGAAGAAGGGGGAGGCTCCC 340
consensus_14731#0 ------------------------------------------------------------
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 TCTTTGAAG--CGGTTC--AAGGCT---GGAGACCA--TGCACC-AGCATAT-GCAAA-- 1083
consensus_14731#2 TCTTTTNAAGCCGGTTCCAAAGGCTTTGGAGGACCCATTGCACCCAGCATATTGCAAAAC 400
consensus_14731#0 ------------------------------------------------------------
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 CAAAGAAGTGTATGCATCGATTTTTACTTCTTCCAAGAAGTCAGATTTCAAGGAGACATA 1143
consensus_14731#2 CAAAGGAAGGTTTAATTCCATC--CGATTTTTTNACCTTTCCTTTCCCCAGGAAGGTCAA 458
consensus_14731#0 ------------------------------------------------------------
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 CTCATGCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAA 1203
consensus_14731#2 ATT--------------------------------------------------------- 461
consensus_14731#0 ------------------------------------------------------------
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 TGGCTTGGAGGTGAACATCCTGCACTGATTTGCTTCATAGCATGGTTCACCTGCAAGTTT 1263
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 ------------------------------------------------------------
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 CTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTG 1323
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 ------------------------------------------------------------
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 TGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAA 1383
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 ------------------------------------------------------------
consensus_14731#3 ------------------------------------------------------------
consensus_14731#1 TAGTTTGATACCATTAACAAGCAATACCAGCTCTGAAATCTTCTGTAAAAAAAAAAAAAA 1443
consensus_14731#2 ------------------------------------------------------------
consensus_14731#0 ------------
consensus_14731#3 ------------
consensus_14731#1 AAAAGGCCACAT 1455
consensus_14731#2 ------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||