cluster # 14739

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14739 cluster # 14739 Sequences # 18 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14739#0 length = 1136 sequences # 8
consensus_14739#1 length = 834 sequences # 8

consensus_14739#2 length = 563 sequences # 1
consensus_14739#3 length = 132 sequences # 1

consensusID : consensus_14739#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1136
fasta sequence

                              [CGCGTCCGTCCCCTTCTCCTTCTCTTTCCCCTCGGCGGCGGCGGCGGCTTCTCCCTTCTCTTCTCTCTCTCGCATCGCCTACTCGTTCGTTTTCCCTCGAGGAGGAGCAGAGGCGGCGGCGGCGGCGGCGGAGCGGACATGGCTGAGGTGGAGGCAGCGCCGATTGCGGCGGCGGAGACCCCGGAGGTGGCGGCGGCGGAGGGAGCGGCGGCGGCGAAGGCGCCGCAC-AAGCTGCATAGGCAGTGGGCGTTCTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACCTCGCTCCGCAAGGCCTACACCTTCGACACCGTCGAGGAGTTCTGGGGCTTGTATGATCAGA-TTTTCCGTCCAAGCAAGGTGACAGT-AAATGCTGA-TTTTCATTTATTCAAGGTTGGT-GTAGAACCAAAGTGGG--AAGACCCAGAGTGTGCAAATG-GGGGCAAATGGACTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAGTTGTTGCTAGTGTCCGCCAGAGAGGAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAGAGGGAGAAA-CCAAG-CAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATC-----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAACCCCGGTTTTCCCTTAACAAAGGGAATGGTAAAAAAAAGGGGCAAATCCGGGGCC]

[+] EMBL OS34598              [CGCGTCCGTCCCCTTCTCCTTCTCTTTCCCCTCGGCGGCGGCGGCGGCTTCTCCCTTCTCTTCTCTCTCTCGCATCGCCTACTCGTTCGTTTTCCCTCGAGGAGGAGCAGAGGCGGCGGCGGCGGCGGCGGAGCGGACATGGCTGAGGTGGAGGCAGCGCCGATTGCGGCGGCGGAGACCCCGGAGGTGGCGGCGGCGGAGGGAGCGGCGGCGGCGAAGGCGCCGCAC AAGCTGCATAGGCAGTGGGCGTTCTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACCTCGCTCCGCAAGGCCTACACCTTCGACACCGTCGAGGAGTTCTGGGGCTTGTATGATCAGA TTTTCCGTCCAAGCAAGGTGACAGT AAATGCTGA TTTTCATTTATTCAAGGTTGGT GTAGAACCAAAGTGGG  AAGACCCAGAGTGTGCAAATG GGGGCAAATGGACTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAGTTGTTGCTAGTGTCCGCCAGAGAGGAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAGAGGGAGAAA CCAAG CAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGGCATTG                                                                                                                                                      ]
[+] EMBL OSS4954A             [                 CCTTCTCTTTCCCCTCGGCGGCGGCGGCGGCTTCTCCCTTCTCTTCTCTCTCTCGCATCGCCTACTCGTTCGTTTTCCCTCGAGGAGGAGCAGAGACGGCGGCGGCGGCGGCNGA NGGACATGGNTGAGGTGGAGGCAGCGNCNCTTNCGGCGGCGGAGACCCCGGAGGTGGCGGCGGCGGAGGGAGCGGCGGCGGCGAAGNCGCCGANC AAGCTGNATAGGCAGTGGGCGTTCTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACCTCGCTCCGAAAGGCCTACAACTTCGACAACGT GAGGAGTTCTGGGGNTTGTATGATCAGATTTTTNCGTCCAAGAAAGGTGA AAT AAATGCTGA TTTTAATTTATTCAAGGTTGG  NTAGAACCAAAGGGGG  AAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU164910             [                                                           CTTCTCTCTCTCGCATCGCCTACTCGTTCGTTTTCCCTCGAGGAGGAGCAGAGGCGGCGGCGGCGGCGGCGGAGCGGACATGGCTGAGGTGGAGGCAGCGCCGATTGCGGCGGCGGAGACNCCGGAGGTGGCGGCGGCGGAGGGAGCGGCGGCGGCGAAGGCGCCGCAC AAGCTGCATAGGCAGTGGGCGTTCTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACCTCGCTCCGCAAGGCCTACACCTTCGACACCGTCGAGGAGTTCTGGGGCTTGTATGATCAGA TTTTCCGTCCAAGCAAGGTGACAGT AAATGCTGATTTTTCATTTATTCAAGGCTGGT GTAGAACCAAAGTGGGGAAAGACCCAGAGTGTGCAAATGNGGGGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU077497             [                                                                         ATCGCCTACTCGTNCGTTTTCCCTCGAGGAGGAGCAGAGGCGGCGGCGGCGGCGGCGGA NGGACATGGCTGAGGTGGAGGCAGCG CNNTTGCGGCGGCGGAGACCCCGGAGGTGGCGGCGGCGGAGGGAGCGGCGGCGGCGAAGGCGCCG ACNAAGCTGCATAGGCAGTGGGCGTTCTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACCTCGCTCCGCAAGGCCTACACCTTCGACACCGTCGAGGAGTTCTGGGGCTTGTATGATCAGA TTTTCCGTCCAAGCAAGGTGACANTAAAATNCTGA TTTTAATTTATTCAAGGCTGGTGGTAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSS15794A            [                                                                             CCTACTCGTTCGTTTTCCCTCGAGGAGGAGCAGAGGCGGCGGCGGCGGCGGCGGAG GGACATGGCTGAGGTGGAGGCAGCG CGATTGCGGCGGCGGAGACCCCGGAGGTGGCGGCGGCGGAGGGAGCGGCGGCGGCGAAGGCG CGAAC AAGCTGCATAGGCAGTGGGCGTTCTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACCTCGNTCCGCAAGGCCTACACCTTCGACAACGTCGAGGAGTTCTGGGGCTTGTATGATCAGA TTTTCCGTCCAAGNAAGGTGACAGT AAATGTTGATTTTTCATTTATTCAAGGTTGGT GTAGAACCAAAGTGGG  AAG CCCAGAGTNTG AAATtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU096809             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGAGAAANCCAAGNCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGGCCATCGAGTGGTGT CCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATA     AAAAAAA                                                                                                                                     ]
[+] EMBL AU164905             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAAACGTTGCAGCTTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATC     AAAAAAAAAAAAAAAAAAAAAAAAAA                                                                                                                  ]
[+] EMBL CF330045             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ctgaAGGAGTTTGTACTCTACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATCTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAACCCCGGTTTTCCCTTAACAAAGGGAATGGTAAAAAAAAGGGGCAAATCCGGGGCC]




>consensus_14739#0
CGCGTCCGTCCCCTTCTCCTTCTCTTTCCCCTCGGCGGCGGCGGCGGCTTCTCCCTTCTC
TTCTCTCTCTCGCATCGCCTACTCGTTCGTTTTCCCTCGAGGAGGAGCAGAGGCGGCGGC
GGCGGCGGCGGAGCGGACATGGCTGAGGTGGAGGCAGCGCCGATTGCGGCGGCGGAGACC
CCGGAGGTGGCGGCGGCGGAGGGAGCGGCGGCGGCGAAGGCGCCGCACAAGCTGCATAGG
CAGTGGGCGTTCTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACC
TCGCTCCGCAAGGCCTACACCTTCGACACCGTCGAGGAGTTCTGGGGCTTGTATGATCAG
ATTTTCCGTCCAAGCAAGGTGACAGTAAATGCTGATTTTCATTTATTCAAGGTTGGTGTA
GAACCAAAGTGGGAAGACCCAGAGTGTGCAAATGGGGGCAAATGGACTGTGCCATGTAGC
AGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGCTGATGGCTCTGATTGGAGAGCAG
TTTGATGAAAGTGAGGAAATTTGTGGAGTTGTTGCTAGTGTCCGCCAGAGAGGAGACAAG
CTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGGTAAACATTGGCAAGAAA
TGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAG
AGGGAGAAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGC
TTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCT
AGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTT
ATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACAT
ACATTGACAATCAAGAGGAGCCATGGCATTGCGATCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA
ACCCCGGTTTTCCCTTAACAAAGGGAATGGTAAAAAAAAGGGGCAAATCCGGGGCC

consensusID : consensus_14739#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 834
fasta sequence

                              [GCGTTTTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACCTCGCTCCGCAAGGCCTACACCTTCGACACCGTCGAGGAGTTCTGGGGCTTGTATGATCAGATTTTCCGTCCAAGCAAGGTGACAGTAAATGCTGATTTTCATTTATTCAAGGCTGGTGTAGAACCAAAGTGGGAAGACCCAGAGTGTGCAAATGGGGGCAAATGGACTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAGTTGTTGCTAGTGTCCGCCAGAGAGGAGACAAGCTTGCATTGTGGACTAGGACTG-CCAGCAATGAAGCCGTT-CAGGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAGAGGGAGAAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATCTGCTTACAAAAAATATTCTTACTGGATGGTGTACACTACTTACGCTTTTTAATGCAAGCATCAATCCATTGGGGTCTTAAAAGG]

[-] EMBL CB661556             [GCGTTTTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACCTCGCTCCGCAAGGCCTACACCTTCGACACCGTCGAGGAGTTCTGGGGCTTGTATGATCAGATTTTCCGTCCAAGCAAGGTGACAGTAAATGCTGATTTTCATTTATTCAAGGCTGGTGTAGAACCAAAGTGGGAAGACCCAGAGTGTGCAAATGGGGGCAAATGGACTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAGTTGTTGCTAGTGTCCGCCAGAGAGGAGACAAGCTTGCATTGTGGACTAGGACTG CCAGCAATGAAGCCGTT CAGGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAGAGGGAGAAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGGCAATCAAGAGGAGCCATGGCATTGCGATCTGCTTACACGGCATATTCTTACTGGATGGTGTACACTACTTACGCTTTTTAATGCAAGCATCAATCCATTGGGGTCTTAAAAGG]
[+] EMBL CB661555             [     cTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACCTCGCTCCGCAAGGCCTACACCTTCGACACCGTCGAGGAGTTCTGGGGCTTGTATGATCAAATTTTCCGTCCAAGCAAGGTGACAGTAAATGCTGATTTTCATTTATTCTAGGCTGGTGTACAACCAAAGTGGGAAGACCCAGAGTGTGCAAATGGGGGCTAATGGACTGTGCCATGTACCATGAAGACCACCCTTGAGAACATGTGGCTTGAAACGCTGATGGCTCTGATTGGAGAGCATGTTGATGAAAGTGATGAAATTTGTGGAGTTGTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA999037             [                                                                                                    GCTTGTATGATCAGATTTTCCGTCCAAGCAAGGTGACAGTAAATGCTGATTTTCATTTATTCAAGGCTGGTGTAGAACCAAAGTGGGAAGACCCAGAGTGTGCAAATGGGGGCAAATGGACTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAGTTGTTGCTAGTGTCCGCCAGAGAGGAGACAAGCTTGCATTGTGGACTAGGACTG CCAGCAATGAAGCCGTT CAGGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAGAGGGAGAAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGACCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACTTTGACAATCAAGAGGAGCCATGGC                                                                                             ]
[+] EMBL AU097437             [                                                                                                                                                                                                                                                 cacCCCTTGAGAACATGTGGCTTGAAACGCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAGTTGTTGCTAGTGTCCGCCAGAGAGGAGACAAGCTTGNATTGTGGACTAGGACTG CCAGCAATGAAGCCGTT CAGGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAGAGGGAGAAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATCTGCTTAAAAA                                                                          ]
[+] EMBL AU077496             [                                                                                                                                                                                                                                                                                                                                              TCCGCNAGAGAGGAGACAAGCTNGCATTGTGGACTAGGACTGCCCAGCAATGAAGCCGTT CAGGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTANAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAGAGGGAGAAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGGCNATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAAaaa                                                                                                           ]
[+] EMBL AU031506             [                                                                                                                                                                                                                                                                                                                                                                  CTTGCATTGTGGACTAGGACTG CCAGCAATGAANCCGTTCCAGGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAGAGGGAGAAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATCTGCTTAAAAAAA                                                                        ]
[-] EMBL CF324334             [                                                                                                                                                                                                                                                                                                                                                                                                   acCCGTT CGGGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAGAGGGAGAAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATCTGCTTACAAAAAA                                                                       ]
[+] EMBL AU058140             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGG                                                                                              ]




>consensus_14739#1
GCGTTTTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACCTCGCTC
CGCAAGGCCTACACCTTCGACACCGTCGAGGAGTTCTGGGGCTTGTATGATCAGATTTTC
CGTCCAAGCAAGGTGACAGTAAATGCTGATTTTCATTTATTCAAGGCTGGTGTAGAACCA
AAGTGGGAAGACCCAGAGTGTGCAAATGGGGGCAAATGGACTGTGCCATGTAGCAGGAAG
ACCACCCTTGAGAACATGTGGCTTGAAACGCTGATGGCTCTGATTGGAGAGCAGTTTGAT
GAAAGTGAGGAAATTTGTGGAGTTGTTGCTAGTGTCCGCCAGAGAGGAGACAAGCTTGCA
TTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGGTAAACATTGGCAAGAAATGGAAG
GAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAGAGGGAG
AAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGAT
AGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTT
GTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTA
AAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTG
ACAATCAAGAGGAGCCATGGCATTGCGATCTGCTTACAAAAAATATTCTTACTGGATGGT
GTACACTACTTACGCTTTTTAATGCAAGCATCAATCCATTGGGGTCTTAAAAGG

consensusID : consensus_14739#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [TAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATCTGCTTACACGGCATATTCTTACTGGATGGTGTACACTACTTACCCTTTTTAATGCAAGCATCAATCCATTGCTTTTCTCACTGCACACCTGATTCGTACTGAAAACGTGAAACATAAAAAAAAACAAAAATCTAGCTGATGTTGGCTCTCGGGGCCTCGAGTCTAGTTTGTCCTAGATGGCTAACCTGATATGTGTTGGTCACGCTCACGTTTGTACCGAGAAAGAGTGTGTGTGTGTGTGTGTCGGCGTGCTGCTACACCAGAGCCTCCCTGAATCGCAATGCGTGTTAACGCCAGCATCGCAGGATTTCATCTCACTTGACAGGTTCTTTCTACTCCTTCAGGCCCATG]

[-] EMBL CF299047             [TAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATCTGCTTACACGGCATATTCTTACTGGATGGTGTACACTACTTACCCTTTTTAATGCAAGCATCAATCCATTGCTTTTCTCACTGCACACCTGATTCGTACTGAAAACGTGAAACATAAAAAAAAACAAAAATCTAGCTGATGTTGGCTCTCGGGGCCTCGAGTCTAGTTTGTCCTAGATGGCTAACCTGATATGTGTTGGTCACGCTCACGTTTGTACCGAGAAAGAGTGTGTGTGTGTGTGTGTCGGCGTGCTGCTACACCAGAGCCTCCCTGAATCGCAATGCGTGTTAACGCCAGCATCGCAGGATTTCATCTCACTTGACAGGTTCTTTCTACTCCTTCAGGCCCATG]




>consensus_14739#2
TAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGT
TGTTGTCCGAGGCAATTTTTCCGACCCTATTGTGTTGCTTTCCTCTCTGATAGCTTATGG
TAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACATACAT
TGACAATCAAGAGGAGCCATGGCATTGCGATCTGCTTACACGGCATATTCTTACTGGATG
GTGTACACTACTTACCCTTTTTAATGCAAGCATCAATCCATTGCTTTTCTCACTGCACAC
CTGATTCGTACTGAAAACGTGAAACATAAAAAAAAACAAAAATCTAGCTGATGTTGGCTC
TCGGGGCCTCGAGTCTAGTTTGTCCTAGATGGCTAACCTGATATGTGTTGGTCACGCTCA
CGTTTGTACCGAGAAAGAGTGTGTGTGTGTGTGTGTCGGCGTGCTGCTACACCAGAGCCT
CCCTGAATCGCAATGCGTGTTAACGCCAGCATCGCAGGATTTCATCTCACTTGACAGGTT
CTTTCTACTCCTTCAGGCCCATG

consensusID : consensus_14739#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 132
fasta sequence

                              [AAAAAATATATGTTATTGAGACAACAAAAATAGTCTAAACACATACATGGAAGCTGTAGACCATCTTATCATTGTAGTCAACAATCTCCTTCCATTTCTTGCCAATGTTTACCTGCAAAGCAAAGGCATGTT]

[+] EMBL BU672831             [AAAAAATATATGTTATTGAGACAACAAAAATAGTCTAAACACATACATGGAAGCTGTAGACCATCTTATCATTGTAGTCAACAATCTCCTTCCATTTCTTGCCAATGTTTACCTGCAAAGCAAAGGCATGTT]




>consensus_14739#3
AAAAAATATATGTTATTGAGACAACAAAAATAGTCTAAACACATACATGGAAGCTGTAGA
CCATCTTATCATTGTAGTCAACAATCTCCTTCCATTTCTTGCCAATGTTTACCTGCAAAG
CAAAGGCATGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14739#0      CGCGTCCGTCCCCTTCTCCTTCTCTTTCCCCTCGGCGGCGGCGGCGGCTTCTCCCTTCTC 60
consensus_14739#1      ------------------------------------------------------------
consensus_14739#2      ------------------------------------------------------------
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      TTCTCTCTCTCGCATCGCCTACTCGTTCGTTTTCCCTCGAGGAGGAGCAGAGGCGGCGGC 120
consensus_14739#1      ------------------------------------------------------------
consensus_14739#2      ------------------------------------------------------------
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      GGCGGCGGCGGAGCGGACATGGCTGAGGTGGAGGCAGCGCCGATTGCGGCGGCGGAGACC 180
consensus_14739#1      ------------------------------------------------------------
consensus_14739#2      ------------------------------------------------------------
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      CCGGAGGTGGCGGCGGCGGAGGGAGCGGCGGCGGCGAAGGCGCCGCACAAGCTGCATAGG 240
consensus_14739#1      ------------------------------------------------------------
consensus_14739#2      ------------------------------------------------------------
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      CAGTGGGCGTTCTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACC 300
consensus_14739#1      ------GCGTTTTGGTACGACATCCAGTCCAAGCCCAAGCCCGGCGCCGCGTGGGGGACC 54
consensus_14739#2      ----------------------TAGTGGCCA---TCGAGTGGTGTGCCG-ATACCGGCGC 34
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      TCGCTCCGCAAGGCCTACACCTTCGACACCGTC-GAGG-AGTTCTGGGGCTTGTATGATC 358
consensus_14739#1      TCGCTCCGCAAGGCCTACACCTTCGACACCGTC-GAGG-AGTTCTGGGGCTTGTATGATC 112
consensus_14739#2      CTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCCTATTGTG 94
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      AGATTTTCCGTCCAAGCAAGGTGACAGTAAATGCTGATTTTCATTTATTCAAG-GTTGGT 417
consensus_14739#1      AGATTTTCCGTCCAAGCAAGGTGACAGTAAATGCTGATTTTCATTTATTCAAG-GCTGGT 171
consensus_14739#2      TTGCTTTCC-TCTCTGATAGCTTATGGTAAAAG---ATACAAAGATGTTGAGGAGTTTGT 150
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      GTAGAACCAAAGTGGGAAGACCCAGAGTGTGCAAATGGGGGCAAATGGACTGTGCCATGT 477
consensus_14739#1      GTAGAACCAAAGTGGGAAGACCCAGAGTGTGCAAATGGGGGCAAATGGACTGTGCCATGT 231
consensus_14739#2      ACGCCACTTAATTTTG----CTCGTAACATACATTGACAATCAAGAGGA----GCCATG- 201
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      AGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGCTGATG-GCTCTGATTGGAGA 536
consensus_14739#1      AGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGCTGATG-GCTCTGATTGGAGA 290
consensus_14739#2      -GCATTGCGATCTGCTTACACGGCATAT--TCTTACTGGATGGTGTACACTACTTAC--- 255
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      GCAGTTTGATGAAAGTGAGGAAATTTGTGGAGTTGTTGCTAGTGTCCGCCAGAGAGGAGA 596
consensus_14739#1      GCAGTTTGATGAAAGTGAGGAAATTTGTGGAGTTGTTGCTAGTGTCCGCCAGAGAGGAGA 350
consensus_14739#2      CCTTTTTAATGCAAGCAT--CAATCCATTG--CTTTTCTCACTGCACACCTGA-----TT 306
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      CAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGGTAAACATTGGCAA 656
consensus_14739#1      CAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGGTAAACATTGGCAA 410
consensus_14739#2      CGTACTGAAAACGTGAAACATAAAAAAAAACAAAAATCTAGCTGATGTTGGCTCTCG-GG 365
consensus_14739#3      ---------------------AAAAAATATATGTTATTGAGACAACAAAAATAGTCTAAA 39
                                             *     *      *    *   *         *     

consensus_14739#0      GAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGA---TGA 713
consensus_14739#1      GAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGA---TGA 467
consensus_14739#2      GCCTCGAGTCTAGTTTGTC--CTAGATGGCTAACCTGATATGTGTTGGTCACGC---TCA 420
consensus_14739#3      CACATACATGGAAGCTGTAGACCATCTTATCATTGTAGTCAACAATCTCCTTCCATTTCT 99
                                  *   ***   * *       *   *  *          *       *  

consensus_14739#0      CGCCAAGAGGGAGAAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACG 773
consensus_14739#1      CGCCAAGAGGGAGAAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACG 527
consensus_14739#2      CGTTTGTACCGAGAAAGAGTGTGTGTGTGTGTGTGTCGGCGTGCT-GCTACACCAGAGCC 479
consensus_14739#3      TGCCAATGTTTACCTGCAAAGCAAAGGCATGTT--------------------------- 132
                        *         *        *     *                                 

consensus_14739#0      TTGCAGCTTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGC 833
consensus_14739#1      TTGCAGCTTGGATAGTGGCCATCGAGTGGTGTGCCGATACCGGCGCCTGTTCTTTACAGC 587
consensus_14739#2      TC----CCTGAATCGCAAT---------GCGTGTTAACGCCAGCATCGCAGGATTTCA-T 525
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      CTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTG 893
consensus_14739#1      CTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTTGCTTTCCTCTCTG 647
consensus_14739#2      CTCACTTGACAGGTTCTTTC----TACTCCTTCAGGCCCATG------------------ 563
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      ATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTC 953
consensus_14739#1      ATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTC 707
consensus_14739#2      ------------------------------------------------------------
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      GTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATCAAAAAAAAAAAAAAAAA 1013
consensus_14739#1      GTAACATACATTGACAATCAAGAGGAGCCATGGCATTGCGATCTGCTTACAAAAAATATT 767
consensus_14739#2      ------------------------------------------------------------
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAA 1073
consensus_14739#1      CTTACTGGATGGTGTACACTACTTACGCTTTTTAATGCAAGCATCAATCCATTGGGGTCT 827
consensus_14739#2      ------------------------------------------------------------
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      AAAAAAAACCCCGGTTTTCCCTTAACAAAGGGAATGGTAAAAAAAAGGGGCAAATCCGGG 1133
consensus_14739#1      TAAAAGG----------------------------------------------------- 834
consensus_14739#2      ------------------------------------------------------------
consensus_14739#3      ------------------------------------------------------------
                                                                                   

consensus_14739#0      GCC 1136
consensus_14739#1      ---
consensus_14739#2      ---
consensus_14739#3      ---