Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14746 cluster # 14746       Sequences # 18       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14746#0 length = 929 sequences # 16  
consensus_14746#1 length = 634 sequences # 2  

consensusID : consensus_14746#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 929
fasta sequence
                              [CCGACTTCGCCTGCCTTCCCCCCCCCCCCCCCCCCCCCCCTCCCCTCGTCAATCCCCAAACCCTCCTCCTCCTCTCCGGCGATCCACCCATCGATCGGCGATGACGCTGGGGAGCTCCGGCGCCGGATCGAGCGTCGTCGTTCCGCGAAACTTCAGGTTGCTAGAAGAGCTTGAACGTGGTGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATGATGCAGATGACATCTACATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTGTCCATGAAGGTCGC-ATCTACCAGCTGAAGCTGTTCTGTGACAAGGACTAC-CCAGAG-AAGCCA-CCATCTGTCCGG-TTTCATTC-AAGAATCAATATGT-CGTGTG-TTAATCATGAGAC-TGGAGCGGTTGACTCGAGGAAG-T-TTGGTGTTCTAGCAAAC-TGGCAGCGCGAGTACACCAT-GGAGACTATCCTTACCCAGCT-C-AAG-AAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGC-AACCTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC-AACAACCGAGTCC-AACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGCAAAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGT-AACTGCAGGTCCTTTATATTGCCTACATGAATATAGTCCGTGCATGCTTTTCTTTAAGAAAGCGGTATGNAATAAAAAAAAAAAAAAAAAAGAAGCGGNCGNCACCGNG]

[+] EMBL AK073729             [CCGACTTCGCCTGCCTTCCCCCCCCCCCCCCCCCCCCCCCTCCCCTCGTCAATCCCCAAACCCTCCTCCTCCTCTCCGGCGATCCACCCATCGATCGGCGATGACGCTGGGGAGCTCCGGCGCCGGATCGAGCGTCGTCGTTCCGCGAAACTTCAGGTTGCTAGAAGAGCTTGAACGTGGTGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATGATGCAGATGACATCTACATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTGTCCATGAAGGTCGC ATCTACCAGCTGAAGCTGTTCTGTGACAAGGACTAC CCAGAG AAGCCA CCATCTGTCCGG TTTCATTC AAGAATCAATATGT CGTGTG TTAATCATGAGAC TGGAGCGGTTGACTCGAGGAAG T TTGGTGTTCTAGCAAAC TGGCAGCGCGAGTACACCAT GGAGACTATCCTTACCCAGCT C AAG AAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGC AACCTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC AACAACCGAGTCC AACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGCAAAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGT AACTGCAGGTCCTT                                                                                               ]
[+] EMBL CF281681             [                                               GTCAATCCCCAAACCCTCCTCCTCCTCTCCGGCGATCCACCCATCGATCGGCGATGACGCTGGGGAGCTCCGGCGCCGGATCGAGCGTCGTCGTTCCGCGAAACTTCAGGTTGCTAGAAGAGCTTGAACGTGGTGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATGATGCAGATGACATCTACATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTGTCCATGAAGGTCGC ATCTACCAGCTGAAGCTGTTCTGTGACAAGGACTAC CCAGAG AAGCCA CCATCTGTCCGG TTTCATTC AAGAATCAATATGTNCGTGTG TTAATCATGAGAC TGGAGCGGTTGACTCGAGGAAG TNTTGGTGTTCTAGCAAAC TGGCAGCGCGAGTACACCAT GGAGACTATCCTTACCCAGCT C AAG GAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGC AACCTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC AACAACCGAGTCC AACTTTGCGCCT                                                                                                                                                                                                                                         ]
[+] EMBL AK104965             [                                                   ATCCCCAAACCCTCCTCCTCCTCTCCGGCGATCCACCCATCGATCGGCGATGACGCTGGGGAGCTCCGGCGCCGGATCGAGCGTCGTCGTTCCGCGAAACTTCAGGTTGCTAGAAGAGCTTGAACGTGGTGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATGATGCAGATGACATCTACATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTGTCCATGAAGGTCGC ATCTACCAGCTGAAGCTGTTCTGTGACAAGGACTAC CCAGAG AAGCCA CCATCTGTCCGG TTTCATTC AAGAATCAATATGT CGTGTG TTAATCATGAGAC TGGAGCGGTTGACTCGAGGAAG T TTGGTGTTCTAGCAAAC TGGCAGCGCGAGTACACCAT GGAGACTATCCTTACCCAGCT C AAG AAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGC AACCTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC AACAACCGAGTCC AACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGCAAAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGT AACTGCAGGTCCTTTATATTGCCTACATGAATATAGTCCGTGCAT                                                                ]
[+] EMBL CB649935             [                                                          AACCCTCCTCCTCCTCTCCGGCGATCCACCCATCGATCGGCGATGACGCTGGGGAGCTCCGGCGCCGGATCGAGCGTCGTCGTTCCGCGAAACTTCAGGTTGCTAGAAGAGCTTGAACGTGGTGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATGATGCAGATGACATCTACATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTGTCCATGAAGGTCGC ATCTACCAGCTGAAGCTGTTCTGTGACAAGGACTAC CCAGAG AAGCCA CCATCTGTCCGG TTTCATTC AAGAATCAATATGT CGTGTG TTAATCATGAGAC TGGAGCGGTTGACTCGAGGAAG T TTGGTGTTCTAGCAAAC TGGCAGCGCGAGTACACCAT GGAGACTATCCTTACCCAGCT C AAG AAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGC AACCTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTATCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC AACAACCGAGTCC AACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGANAAGGGTGATCTGGTTTGGCAAAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGT AACTGCAGGTCCTTTA                                                                                             ]
[+] EMBL OSC4881              [                                                                     TCCTCTCCGGCGATCCACCCATCGATCGGCGATGACGCTGGGGAGCTCCGGCGCCGGATCGAGCGTCGTCGTTCCGCGAAACTTCAGGTTGCTAGAAGAGCTTGAACGTGGTGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATGATGCAGATGACATCTACATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTGTCCATGAAGGTCGC ATCTACCAGCTGAAGCTGTTCTGTGACAAGGACTAC CCAGAG AAGCCA CCATCTGTCCGG TTTCATTC AAGAATCAATATGT CGTGTG TTAATCATGAGACTTGGAGCGGTTGACTCGAGGAAGTT TTGGTGTTCTAGCAAACTTGGCAGCGCGAGTACACCATNGGGGACTATCCTTACCCAGCT CAAAG AAGGAGATTGCAACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU161058             [                                                                                 ATCCACCCATCGATCGGCGATGACGCTGGGGAGCTCCGGCGCCGGATCGAGCGTCGTCGTTCCGCGAAACTTCAGGTTGCTAGAAGAGCTTGAACGTGGTGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATGATGCAGATGACATCTACATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTGTCCATGAAGGTCGC ATCTACCAGCTGAAGCTGTTCTGTGACAAGGACTAC CCAGAG AAGCCA CCATCTGTCCGG TTTCATTC AAGAATCAATATGT CGTGTG TTAATCATGAGAC TTGAGCGGTTGACTCGAGGAAG T TTGGTGTTCTAGCAAAC TTGCAGCGCGAGTACACCAT GGAGACTATCCTTACCCAGCTNA AAGAAAGGAGATNGCAACCCCCAAGAATCGCAAGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OS31693              [                                                                                                 cgaATGACG TGGGGAGCTCCGGCG CGGATCGAGCGTCGTCG TCCGCGAAACTTCAGGTTGCTAGAAGAGCTTGAACGTGGTGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATGATGCAGATGACATCTACATGCGGTCTTGGACTGGCACCTACATTGGTCCACATAATAGTGTCCATGAAGGTCGC ATCTACCAGCTGAAGTCGTTCTGTGACAAGG  TACACCAGAG AAGCCA CCATCTGTCCGttc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OS37919              [                                                                                                                                                           GGTTGCTAGAAGAG TTGAACGTGGTGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGTAGTAGCAGTAGACATCTACATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTGTCCATGAAGGTCGCTAT GACCGACTGAAGCTGTTCTGTGACAAGGACTAC CCAGAG AAGCCA CCATCTGTCCGG TTTCATTC AAGAATCAATATGT CGTGTG TTAATCATGAGAC TGGAGCGGTTGACTCGAGGAAG T TTGGTGTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA767449             [                                                                                                                                                                                                                              TGATGCAGATGACATCTACATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTGTCCATGAAGGTCGC ATCTACCAGCTGAAGCTGTTCTGTGACAAGGACTAC CCAGAG AAGCCA CCATCTGTCCGG TTTCATTC AAGAATCAATATGT CGTGTG TTAATCATGAGAC TGGAGCGGTTGACTCGAGGAAG T TTGGTGTTCTAGCAAAC TGGCAGCGCGAGTACACCAT GGAGACTATCCTTACCCAGCT C AAG AAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGC AACCTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC AACAACCGAGTCC AACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGCAAAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGCGTCAAGAAATGTGT AACTGCAGGTCCTTTATATTGNCTACATGAATATAGTCCGNGCATGCTTTTCTTTAAGCTGGCGGTATGNAATAAAAAAAAAAAAAAAAAAGAAGCGGNCGNCACCGNG]
[+] EMBL BQ906303             [                                                                                                                                                                                                                                                                                                                          CTGTTCTGTGACAAGGACTAC CCAGAG AAGCCA CCATCTGTCCGG TTTCATTC AAGAATCAATATGT CGTGTG TTAATCATGAGAC TGGAGCGGTTGACTCGAGGAAG T TTGGTGTTCTAGCAAAC TGGCAGCGCGAGTACACCAT GGAGACTATCCTTACCCAGCT C AAG AAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGC AACCTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC AACAACCGAGTCC  ACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGCAAAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGT AACTGCAGGTCCTTTATATTGCCTACATGAATATAGTCCGTGCATGCTTTTCTTTTAAAAA                                                ]
[-] EMBL CF281682             [                                                                                                                                                                                                                                                                                                                                           CTAC CCAGAG AAGCCA CCATCTGTCCGG TTTCATTC AAGAATCAATATGT CGTGTG TTAATCATGAGAC TGGAGCGGTTGACTCGAGGAAG T TTGGTGTTCTAGCAAAC TGGCAGCGCGAGTACACCAT GGAGACTATCCTTACCCAGCT C AAG GAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGC AACCTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTTGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC AACAACCGAATAA AACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAAAAAAAGAGTCGGATGAAAAGGGTGATCTGGTTTGGCAAAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGT AACTGCAGGTCCTTTATATTGCCTACATGAATATAGTGCGTTCTTGCTTTTCTTTAAGAAAaa                                              ]
[+] EMBL BI796226             [                                                                                                                                                                                                                                                                                                                                             AC CCAGAGAAACCCACCCATCTGTCCGGTTTTCATTCAAAGAATCCATATGT CGTGTGTTTAATCATGAGAC TGGAGCGGTTGACTCGAGGAA  T TTGGTGTTCTAGCAAAC T GCAGCGCGAGTACACCAT GGAGACTATCCTTACCCAGCT C AAG AAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGT C AACCTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC ACAAACCGAGTCC AACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGC AAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGTAAACTGCAGGTCCTTTATATTGCCTACATGAATATAGTCCGTGCATGCTTTTCTTTAAGCTGGCGGTATGAAAaa                                   ]
[+] EMBL BI799896             [                                                                                                                                                                                                                                                                                                                                                              CCATCTGTCCGG TTTCATTC AAGAATCAATATGT CGTGTG TTAATCATGAGAC TGGAGCGGTTGACTCGAGGAAG T TTGGTGTTCTAGCAAAC TGGCAGCGCGAGTACACCAT GGAGACTATCCTTACCCAGCT C AAG AAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGC AACCTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC AACAACCGAGTCC AACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGC AAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGTAAACTGCAGGTCCTTTATATTGCCTAaaaaaa                                                                              ]
[+] EMBL BI808917             [                                                                                                                                                                                                                                                                                                                                                                                      GAATCAATATGT CGTGTG TTAATCATGAGAC TGGACCGGTTGACTCGAGGAA  T TTGGTGTTCTA CAAAC T GCAGCGCGAGTACACCAT GGAGACTATCCTTACCCAGCT C AAG AAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGCAAACCTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACCAAACAACCGAGTCCAAACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGC AAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGT AACTGCAGGTCCTTTATATTGCCTACATGAATATAGTCCGTGCATGCTTTTCTTTAAAAAAa                                               ]
[+] EMBL OSS1152A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC AACAACCGAGTCC AACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGCAAAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGT AACTGCAGGTCCTTTATATTGCCTAaaaaaaa                                                                             ]
[-] EMBL CB966486             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACC AACAACCGAGTCC AACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGCCAAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGT AACTGCAGGTCCTTTATATTGCCTACATGAATATAGTCCGTGCATG                                                               ]


>consensus_14746#0 CCGACTTCGCCTGCCTTCCCCCCCCCCCCCCCCCCCCCCCTCCCCTCGTCAATCCCCAAA CCCTCCTCCTCCTCTCCGGCGATCCACCCATCGATCGGCGATGACGCTGGGGAGCTCCGG CGCCGGATCGAGCGTCGTCGTTCCGCGAAACTTCAGGTTGCTAGAAGAGCTTGAACGTGG TGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATGATGCAGATGACATCTA CATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTGTCCATGAAGGTCGCAT CTACCAGCTGAAGCTGTTCTGTGACAAGGACTACCCAGAGAAGCCACCATCTGTCCGGTT TCATTCAAGAATCAATATGTCGTGTGTTAATCATGAGACTGGAGCGGTTGACTCGAGGAA GTTTGGTGTTCTAGCAAACTGGCAGCGCGAGTACACCATGGAGACTATCCTTACCCAGCT CAAGAAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGCAACCTCCAGAAGGGACGTT CTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAAC TTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCTGC TTTCTGTGTACCAACAACCGAGTCCAACTTTGCGCCTCGTGATTCGTCGGGTGGCTGTTG ATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGCAAAATTGGCAGTATGAGG GATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGTAACTGCAGGTCCTTTATATT GCCTACATGAATATAGTCCGTGCATGCTTTTCTTTAAGAAAGCGGTATGNAATAAAAAAA AAAAAAAAAAAGAAGCGGNCGNCACCGNG



consensusID : consensus_14746#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 634
fasta sequence
                              [GNCNGGGGGCCCGGNNNGNAGGAAANAAAAATAAAGGTNGGGGGCCNNTGTCNAAAANGTCNGGGGTNGTTNANCNNGGNNGTTTTTGAAANGAANACNNGNGACCCCNANTTTCCGGTTNATTAAANATAAAANTNGGGTTAATTAANAAANGGGGGTTAAATNGNGGAATTTGNTTTTANCAAAAANGGNGGGGGGGAAAACCNANGGGAATNCCNTANCCAGTTCAGGGGGGNGTGGCAAACCCCGCAGATTGCAAGTGGTGCAACCTCCAGAAGGGGAGTTTTTTTTAGGGGGAGTATTAACTTCCTGGTTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTTTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACCAACAACCGAGTCCAACTTTGCGCCTTGTGATTTGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATTTGGTTTGGCAAAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGTAACTGCAGGTCCTTTATATTGCCTACATGAATATAGTCCGTGCCAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL BE229076             [GNCNGGGGGCCCGGNNNGNAGGAAANAAAAATAAAGGTNGGGGGCCNNTGTCNAAAANGTCNGGGGTNGTTNANCNNGGNNGTTTTTGAAANGAANACNNGNGACCCCNANTTTCCGGTTNATTAAANATAAAANTNGGGTTAATTAANAAANGGGGGTTAAATNGNGGAATTTGNTTTTANCAAAAANGGNGGGGGGGAAAACCNANGGGAATNCCNTANCCAGTTCAGGGGGGNGTGGCAAACCCCGCAGATTGCAAGTGGTGCAACCTCCAGAAGGGGAGTTTTTTTTAGGGGGAGTATTAACTTCCTGGTTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTTTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACCAACAACCGAGTCCAACTTTGCGCCTTGTGATTTGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATTTGGTTTGGCAAAATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGTAACTGCAGGTCCTTT                                                    ]
[+] EMBL AU174422             [                                                                                                                                                                                                                                                                                                                                        CAGATTCAACATCATCAACTTGTATTTATNTGGCTCCCGCGCTTAATTGTTTTNTAGTTCAATTTGATATATGCCCTGCTTTNTGTGTACCAACAACCGAGTCCAACTTTGCGCCTCGTGATTNGTCGGGTGGCTGTTGATTAAGGANATGAGTCGGATNAAAANGGTGATNTGGTTTGGCAAAATTGGCAGTATNAGGGATGTAAAATTGGAAACAGATGCTGTGTCAANAAATGTGTAACTGCAGGTCCTTTATATTGCCTACATGAATATAGTCCGTGCCAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14746#1 GNCNGGGGGCCCGGNNNGNAGGAAANAAAAATAAAGGTNGGGGGCCNNTGTCNAAAANGT CNGGGGTNGTTNANCNNGGNNGTTTTTGAAANGAANACNNGNGACCCCNANTTTCCGGTT NATTAAANATAAAANTNGGGTTAATTAANAAANGGGGGTTAAATNGNGGAATTTGNTTTT ANCAAAAANGGNGGGGGGGAAAACCNANGGGAATNCCNTANCCAGTTCAGGGGGGNGTGG CAAACCCCGCAGATTGCAAGTGGTGCAACCTCCAGAAGGGGAGTTTTTTTTAGGGGGAGT ATTAACTTCCTGGTTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTG GCTCCCGCGCTTAATTGTTTTTTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACCA ACAACCGAGTCCAACTTTGCGCCTTGTGATTTGTCGGGTGGCTGTTGATTAAGGAGATGA GTCGGATGAAAAGGGTGATTTGGTTTGGCAAAATTGGCAGTATGAGGGATGTAAAATTGG AAACAGATGCTGTGTCAAGAAATGTGTAACTGCAGGTCCTTTATATTGCCTACATGAATA TAGTCCGTGCCAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14746#0      CCGACTTCGCCTGCCTTCCCCCCCCCCCCCCCCCCCCCCCTCCCCTCGTCAATCCCCAAA 60
consensus_14746#1      ------------------------------------------------------------
                                                                                   

consensus_14746#0      CCCTCCTCCTCCTCTCCGGCGATCCACCCATCGATCGGCGATGACGCTGGGGAGCTCCGG 120
consensus_14746#1      ------------------------------------------------------------
                                                                                   

consensus_14746#0      CGCCGGATCGAGCGTCGTCGTTCCGCGAAACTTCAGGTTGCTAGAAGAGCTTGAACGTGG 180
consensus_14746#1      ------------------------------------------------------------
                                                                                   

consensus_14746#0      TGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATGATGCAGATGACATCTA 240
consensus_14746#1      -----------------------------------------------------GNCNGGG 7
                                                                                   

consensus_14746#0      CATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTGTCCATGAAGGTCGCAT 300
consensus_14746#1      GGCCCGGNNNGNAGGAAANAAAAATAAAGGTN-GGGGGCCNNTGTCNAAAANGTCNGGGG 66
                           ***            *  *  *  ***           **** *  * *   *   

consensus_14746#0      CTACCAGCTGAAGCTGTTCTGTGACAAGGACTACCCAGAGAAGCCACCATCTGTCCGGTT 360
consensus_14746#1      TNGTTNANCNNGGNNGTTTT-TGA-AANGAANACNN---GNGACCCCNANTT-TCCGGTT 120
                                   *  *** * *** ** **  **     *   ** * *  * *******

consensus_14746#0      TCATTCAAGAATCAATATGTCGTGTGTTAATCATGAGACTGGAGCGGTTGACTCGAGGAA 420
consensus_14746#1      NA--TTAAANATAAAANTN----GGGTTAATTAANAAANGGG---GGTTAAATNGNGGAA 171
                           * **  ** **  *     * ****** *  * *  **   **** * * * ****

consensus_14746#0      GTTTGGTGTTCTAGCAAACTGGCAGCGCGAGTACACCATGGAGACTATCCTTACCCAGCT 480
consensus_14746#1      -TTTGNT--TTTANCAAAAANGGNGGGGGGGAAAACCNANGGGAATN-CCNTANCCAGTT 227
                        **** *  * ** ****   *  * * * * * ***   * ** *  ** ** **** *

consensus_14746#0      CAAGAAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGCAACCTCCAGAAGGGACGTT 540
consensus_14746#1      CAGGGGGGNGTGGCAAACCCCGCAGA-TTGCAAGT-GGTGCAACCTCCAGAAGGGGAGTT 285
                       ** *  ** *  *  *********** * ****** *******************  ***

consensus_14746#0      CTTCT--AGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCA 598
consensus_14746#1      TTTTTTAGGGGGAGTATTAACTTCCTGGTTCATCTCCAGAATTCAGATTCAACATCATCA 345
                        ** *   * ******** ** ****** *******************************

consensus_14746#0      ACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAATTTGATATATGCCCT 658
consensus_14746#1      ACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTTTAGTTCAATTTGATATATGCCCT 405
                       ************************************ ***********************

consensus_14746#0      GCTTTCTGTGTACCAACAACCGAGTCCAACTTTGCGCCTCGTGATTCGTCGGGTGGCTGT 718
consensus_14746#1      GCTTTCTGTGTACCAACAACCGAGTCCAACTTTGCGCCTTGTGATTTGTCGGGTGGCTGT 465
                       *************************************** ****** *************

consensus_14746#0      TGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGCAAAATTGGCAGTATGA 778
consensus_14746#1      TGATTAAGGAGATGAGTCGGATGAAAAGGGTGATTTGGTTTGGCAAAATTGGCAGTATGA 525
                       ********************************** *************************

consensus_14746#0      GGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGTAACTGCAGGTCCTTTATA 838
consensus_14746#1      GGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGTAACTGCAGGTCCTTTATA 585
                       ************************************************************

consensus_14746#0      TTGCCTACATGAATATAGTCCGTGCATGCTTTTCTTTAAGAAAGCGGTATGNAATAAAAA 898
consensus_14746#1      TTGCCTACATGAATATAGTCCGTGC-----------CAAAAAA--------AAAAAAAAA 626
                       *************************            ** ***         ** *****

consensus_14746#0      AAAAAAAAAAAAAGAAGCGGNCGNCACCGNG 929
consensus_14746#1      AAAAAAAA----------------------- 634
                       ********                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)