These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14774#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1350 fasta sequence [AAAAAAAAAAAAAAAAATTAGCTTAGCTAGTGTTAGCGAGCTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTCCAGCTCCGGCCGCAAGGGCGCCCCGGCGGGGAAGGGGTGGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTCCTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTCGTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGCTCCCAGAAGCCACAGATAGTCATCAAGAGCATCACGTTCGACAACTTCATAATCCAGGCGGGGACGGACGCGTCGCTGGTGCCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTGACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGCTGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTGCCGATGATCCTGAGGACGACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGC-TTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAGATTGATGAGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTCGAGATTGAAAAAAAA] [+] EMBL AK060983 [AAAAAAAAAAAAAAAAATTAGCTTAGCTAGTGTTAGCGAGCTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTCCAGCTCCGGCCGCAAGGGCGCCCCGGCGGGGAAGGGGTGGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTCCTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTCGTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGCTCCCAGAAGCCACAGATAGTCATCAAGAGCATCACGTTCGACAACTTCATAATCCAGGCGGGGACGGACGCGTCGCTGGTGCCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTGACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGCTGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTGCCGATGATCCTGAGGACGACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGC TTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAGATTGATGAGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTT ] [+] EMBL AU184303 [ ACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTCCAGCTCCGGCCGCAAGGGCGCCCCGGCGGGGAAGGGGTGGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTNCTCGACGACGAGGACGAGCGCAGGGGCATCCCC ] [+] EMBL AA751349 [ cgtGTGCACTCGACGCCGGCGCTGAG CCCAT GGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGC ACAAGTC ] [+] EMBL AU223073 [ GATCCTGAGGACGNCGGTGCACTCAAGGGCGTACGTGCTGGGGGCGCTGGTAAAGCCCAAGTTCNCACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGNCCATNTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTNGTTATTATACCAAACGATCAATTCGTTGCAGATTGATGAGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTCGAGATTGAAAAAAAA] [+] EMBL AU184304 [ ACGACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGC TTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAGATTGATGAGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTaaaaaaaaa ] consensusID : consensus_14774#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1329 fasta sequence [CTCTTCTCTATAGTTATTAGTATTACTCCTACCACGGA--GGT-CNATNTAGNTTAGCTAGTGTTAGNGAGNTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTTCTCGTNCAGCCGCTTNTTCGGCCAACCCAAGCGCAAGGGCGACAAGTCCAG-TTCGGCCGNAA-GGCGCCCCGGCGGGGAAGGGGTTGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTCCTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTCGTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGCTCCCAGAAGCCACAGA-TAGTCATC-AAGAGCATCACGTTCGACAACTTCATAATCCAGG-CGGGGACGGACGCGTCGCTGGTG-CCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTGACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGC-TGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTG-CCGATGATCCTGAGGACG-ACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTAC-GATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSS3521A [CTCTTCTCTATAGTTATTAGTATTACTCCTACCACGGA GGTNCNATNTAGNTTAGCTAGTGTTAGNGAGNTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTNGGAGGTGACGAGCCTGGCGCCATCGTNGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTTCTCGTNCAGCCGCTTNTTCGGCCAACCCAAGCGCAAGGGCGACAAGTCCAG TTCGGCCGNAA GGCGCCCCGGCGGGGAAGGGGTTGC ] [+] EMBL OSS3518A [CTCTTCTCTATAGTTATTAGTATTACTCCTACCACGGA GGT CNATNTAGNTTAGCTAGTGTTAGNGAGNTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGNAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGG ] [+] EMBL OSS3392A [CTCTTCTCTATAGTTATTAGTATTACTCCTACCACGGA GGT CTANTTAGCTTAGCTAGTNTTAGCGAGCTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGNCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGNCGCCGNGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTTCAGAGCCCGTNGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTTGCAC ] [+] EMBL AK068260 [ TTATTAGTATTACTCCTACCACGGAGTGGT C AT TAGCTTAGCTAGTGTTAGCGAGCTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGG TGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTCCAGCTCCGGCCGCAAGGGCGCCCCGGCGGGGAAGGGGTGGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTCCTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTCGTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGCTCCCAGAAGCCACAGA TAGTCATC AAGAGCATCACGTTCGACAACTTCATAATCCAGG CGGGGACGGACGCGTCGCTGGTG CCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTGACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGC TGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTG CCGATGATCCTGAGGACG ACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTAC GATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAACGATC ] [+] EMBL AU029634 [ CAGATCAAGAAGAAGCTAGAGAGAGANCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCNGCGGGCGGCCGGTGTACTACGTGCAGANCCCGTCGANGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTT CACTCNACGCCGGCGCTGAG CCCATTGGGTCGCCGCGGCACTCGGTTGGCAngac ] [+] EMBL AU029635 [ ACAGATTAGTCATCAAAGACCNTCACTTTCGAAAACTTCTTAATCCAGGCCGGNGACGGACCCGTCGCTGGTGCCCGACGGACATGGCGACGACCAACTCGACGNTGAAGCTGACTTACCGGAACACGGGCACGTTCTTCGGGATCCACNTGACGGCGGACCCGTTCACGCTGTCGTA ACCAANCGTGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTGTCCGATGATCCTGAGGACGTACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTAC GATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAAaaaaaa ] [+] EMBL C97098 [ CGTTCGACAACTTCATAATCCAGG CGGGGACGGACGCGTCGCTGGTG CCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTGACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGC TGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTNATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCANAATGGCTCCGGTG CCGATGATCCTAAGGACG ACGGTGCACTCGAGGG ] [+] EMBL CB682650 [ GAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGC TGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTG CCGATGATCCTGAGGACG ACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTAC GATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTT ] [+] EMBL AU222876 [ GTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTG CCGATGATCCTGAGGACG ACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTACGGATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAAaaa ] [+] EMBL AU092518 [ TTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATNCCAAACGATCAATTCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14774#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [GCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCGCCGCGGTCCCCGACGTCGCGCGGGTCGGCCGGTTGTACTACGTGCAGANCCGTCGAGGACTCGCATGACGGGGAGAAGACGGCGACGTNGNTNCACTCGACGCCGGCGCTGAGCCCATGGGTCGCCGCNGCACTCGGTNGGCAGGGACTNCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTNCAGCTCCGGCCGCAAGGGNCCCGGCGGAAAGTGGGTTGCAGGAGATCGGCGTGATCGAGGAGGAAGGGNCTCC] [+] EMBL C28487 [GCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCGCCGCGGTCCCCGACGTCGCGCGGGTCGGCCGGTTGTACTACGTGCAGANCCGTCGAGGACTCGCATGACGGGGAGAAGACGGCGACGTNGNTNCACTCGACGCCGGCGCTGAGCCCATGGGTCGCCGCNGCACTCGGTNGGCAGGGACTNCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTNCAGCTCCGGCCGCAAGGGNCCCGGCGGAAAGTGGGTTGCAGGAGATCGGCGTGATCGAGGAGGAAGGGNCTCC] consensusID : consensus_14774#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [TTCCTGCTGCTTCTTTCTTCCTTTCTCTCTGACGGATCTGGATCTGTGCGATTCTTCCTTTTCTTTTTTCCTTTTTGCGGGATCCGAACGAACGAGCCGATGAGAGATGATGTGATGTNACTGTGATTTCCCGAGTCNAGGATTCGTTGATTGATGACCGAGAACGGATCGAATTCGTTGCNAGGATTGNATGGAGGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTCGAGATTGAAAAAA] [+] EMBL AU097287 [TTCCTGCTGCTTCTTTCTTCCTTTCTCTCTGACGGATCTGGATCTGTGCGATTCTTCCTTTTCTTTTTTCCTTTTTGCGGGATCCGAACGAACGAGCCGATGAGAGATGATGTGATGTNACTGTGATTTCCCGAGTCNAGGATTCGTTGATTGATGACCGAGAACGGATCGAATTCGTTGCNAGGATTGNATGGAGGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTCGAGATTGAAAAAA] consensusID : consensus_14774#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [CCTGGCGCNANNCCTGCTCNCCNCGGTANCCCNACGTCCCGCGGCGGGCGGCCGGTTTACTACGTCCAGAGCCCGTCAAGGNACTCGNATGACGGGAAGAAGACGGCAACGTCGGTNCACTCAACGCCGGCCCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGNACTCCTCGTCCAGCCGCTTCTNCGGCCACCCC] [+] EMBL OSS1209A [CCTGGCGCNANNCCTGCTCNCCNCGGTANCCCNACGTCCCGCGGCGGGCGGCCGGTTTACTACGTCCAGAGCCCGTCAAGGNACTCGNATGACGGGAAGAAGACGGCAACGTCGGTNCACTCAACGCCGGCCCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGNACTCCTCGTCCAGCCGCTTCTNCGGCCACCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 CTCTTCTCTATAGTTATTAGTATTACTCCTACCACGGAGGTCNATNTAGNTTAGCTAGTG 60 consensus_14774#0 ----------------------------AAAAAAAAAAAAAAAAATTAGCTTAGCTAGTG 32 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 TTAGNGAGNTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGA 120 consensus_14774#0 TTAGCGAGCTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGA 92 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 -------------------------GCACGCCAAGACGGACTCGGAGGTGACGAGCCTGG 35 consensus_14774#4 -------------------------------------------------------CCTGG 5 consensus_14774#1 TCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGG 180 consensus_14774#0 TCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGG 152 consensus_14774#3 --------------------------------------------------------TTCC 4 * consensus_14774#2 CGCCATCGTCG--CGCCGCGGT-CCCCGACGTCGCGCGG--GTCGGCCGGTTGTACTACG 90 consensus_14774#4 CGCNANNCCTGCTCNCCNCGGTANCCCNACGTCCCGCGGCGGGCGGCCGGTT-TACTACG 64 consensus_14774#1 CGCCATCGTCGC-CGCCGCGGT-CCCCGACGTCGCGCGGCGGGCGGCCGGTG-TACTACG 237 consensus_14774#0 CGCCATCGTCGC-CGCCGCGGT-CCCCGACGTCGCGCGGCGGGCGGCCGGTG-TACTACG 209 consensus_14774#3 TGCTGCTTCTTTCTTCCTTTCT-CTCTGACGGATCTGGATCTGTGCGATTCTTCCTTTTC 63 ** ** * * *** * * * * consensus_14774#2 TGCAGANCC-GTCGAGGA-CTCGCATGA-CGGGGAGAAGACGGCGACGTNGNTN-CACT- 145 consensus_14774#4 TCCAGAGCCCGTCAAGGNACTCGNATGA-CGGGAAGAAGACGGCAACGTCGGTN-CACT- 121 consensus_14774#1 TGCAGAGCCCGTCGAGGGACTCGCATGA-CGGGGAGAAGACGGCGACGTCGGTTGCACT- 295 consensus_14774#0 TGCAGAGCCCGTCGAGGGACTCGCATGA-CGGGGAGAAGACGGCGACGTCGGTG-CACT- 266 consensus_14774#3 TTTTTTCCTTTTTGCGGGATCCGAACGAACGAGCCGATGAGAGATGATGTGATGTNACTG 123 * * * ** ** * ** ** * ** ** * * * *** consensus_14774#2 CGACG--CCGGCGCTGAGCCC-ATGGG-TCGCCGCNGCACTCGGTNGGCAGGGACTNCTC 201 consensus_14774#4 CAACG--CCGGCCCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGNACTCCTC 179 consensus_14774#1 CGACG--CCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTTCTC 353 consensus_14774#0 CGACG--CCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTC 324 consensus_14774#3 TGATTTCCCGAGTCNAGGATTCGTTGATTGATGACCGAGAACGGATCGAATTCGTTGCNA 183 * *** * * * * * * * *** * * * * consensus_14774#2 G--TCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTNCAGCTCCGGCCGC 259 consensus_14774#4 G--TCCAGCCGCTTCTNCGGCCACCCC--------------------------------- 204 consensus_14774#1 G--TNCAGCCGCTTNTTCGGCCAACCCAAGCGCAAGGGCGACAAGTCCAGTTCGGCCGNA 411 consensus_14774#0 G--TCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTCCAGCTCCGGCCGC 382 consensus_14774#3 GGATTGNATGGAGGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTAT 243 * * * * * * * consensus_14774#2 AAGGGN--CCCGGCGGAAAGTGGGTTGCAGGAGATCGGCGTGATCGAGGAGGAAGGGNCT 317 consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 AGGCGC--CCCGGCGGGGAAGGGGTTGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTC 469 consensus_14774#0 AAGGGCGCCCCGGCGGGGAAGGGGTGGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTC 442 consensus_14774#3 GCTTATCTTTCGAGATTGAAAAAA------------------------------------ 267 consensus_14774#2 CC---------------------------------------------------------- 319 consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 CTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTC 529 consensus_14774#0 CTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTC 502 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 GTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGC 589 consensus_14774#0 GTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGC 562 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 TCCCAGAAGCCACAGATAGTCATCAAGAGCATCACGTTCGACAACTTCATAATCCAGGCG 649 consensus_14774#0 TCCCAGAAGCCACAGATAGTCATCAAGAGCATCACGTTCGACAACTTCATAATCCAGGCG 622 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 GGGACGGACGCGTCGCTGGTGCCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTG 709 consensus_14774#0 GGGACGGACGCGTCGCTGGTGCCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTG 682 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 ACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTG 769 consensus_14774#0 ACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTG 742 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 TCGTACAGCCAGCTGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGC 829 consensus_14774#0 TCGTACAGCCAGCTGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGC 802 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 AGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGG 889 consensus_14774#0 AGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGG 862 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 CCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTGCCGATGATCCTGAGG 949 consensus_14774#0 CCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTGCCGATGATCCTGAGG 922 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 ACGACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGC 1009 consensus_14774#0 ACGACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGC 982 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 GCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGAC 1069 consensus_14774#0 GCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGAC 1042 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 AAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGG 1129 consensus_14774#0 AAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGG 1102 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 ATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTC 1189 consensus_14774#0 ATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTC 1162 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 TTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTA 1249 consensus_14774#0 TTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTA 1222 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 TTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAAAAAAAAAAAAAAA 1309 consensus_14774#0 TTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAGATTGATGAGATCG 1282 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 ------------------------------------------------------------ consensus_14774#4 ------------------------------------------------------------ consensus_14774#1 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 1329 consensus_14774#0 ATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTCGAGATTG 1342 consensus_14774#3 ------------------------------------------------------------ consensus_14774#2 -------- consensus_14774#4 -------- consensus_14774#1 -------- consensus_14774#0 AAAAAAAA 1350 consensus_14774#3 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||