These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1678 fasta sequence [GGACTGGGACTATCTGATATTGATTCTTGGAATATGATTGAGAAAATAGCTGAGAGAAACAACTTGGGTTACAAGCAGCTCATCAAACTTAGAGCATTGCTCACACATCTGCAACAACTGCGCATTGGCTATTGGGGAGTCGCTACAGGGAAAGGACAACAACCGCCATCATATGGCATGGCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGATTGGGTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGCTATTACTGCTCTTCATTGTGTAACAAGGAAAGAGGTTTGGGNTCTTGTTGGTGATCGTGAAGATGCTGGCTTTTTCATCAGTGGAAGCACAGATTGCACGGTAAAAATATGGGATCCAAG-TTTGCGTGGTTCTGAACTTCGGACAACACTTAAAGGGCACACTAGGACAATTCGAGCAATTAGTTCA-GATCGTGGT-AAAATTGTTTCTGGAGCTGATGATCAATCTGTCATAGTCTGGGATAAGCAAACTTTTAAACTTTTGGAGGAACTTAAGGGTCATGATGCACCGGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTTCTTACTGCATCTCATGATGGCACTGTCAAGATGTGGGATGTACGTACCGATACTTGTGTTGCTACTGTGGGTCGTTGTCAAAGTGCAGTTCTCTGTATGGAATATGATGACTCAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCACATGTCTGGGATATTCGTTCCAGTAAGCAGATGTTCAAGCTCCAAGGGCACACAAAGTGGATAAGATCAATGAGGATGACGGGTGAAACCATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG-TTCTGTCCATTAGTGCCAGTGATCA-TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC-GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAG-CGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAA-A-TTTATT-GTTCTAGCCAAAAAAAAAAA] [+] EMBL OSS13724A [GGACTGGGACTATCTGATATTGATTCTTGGAATATGATTGAGAAAATAGCTGAGAGAAACAACTTGGGTTACAAGCAGCTCATCAAACTTAGAGCATTGCTCACACATCTGCAACAACTGCGCATTGGCTATTGGGGAGTCGCTACAGGGAAAGGACAACAACCGCCATCATATGGCATGGCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGATTGGGTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGCCAGAAGCTTAAGGGCT ] [+] EMBL CA999681 [ CTTGGGTTACAAGCAGCTCATCAAACTTAGAGCATTGCTCACACATCTGCAACAACTGCGCATTGGCTATTGGGGAGTCGCTACAGGGAAAGGACAACAACCGCCATCATATGGCATGGCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGATTGGGT ] [+] EMBL AU030297 [ GGTTACAAGCAGCTCATCAAACTTAGAGCATTGCTCACACATCTGCAACAACTGCGCATTGGCTATTGGGGAGTCGCTACAGGGAAAGGACAACAACCGCCATCATATGGCATGGCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGATTGGGTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGCTATTACTGCTC TCATTGTGT ACAAGGAAAGAGGTTT GGNTCTTGTTGGT ATCGTGAA ATGCTGGCTTTTca ] [+] EMBL CB646901 [ CAACAACCGCCATCATATGGCATGGCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGATTGGGTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGCTATTACTGCTCTTCATTGTGTAACAAGGAAAGAGGTTTGGGATCTTGTTGGTGATCGTGAAGATGCTGGCTTTTTCATCAGTGGAAGCACAGATTGCACGGTAAAAATATGGGATCCAAG TTTGCGTGGTTCTGAACTTCGGACAACACTTAAAGGGCACACTAGGACAATTCGAGCAATTAGTTCA GATCGTGGT AAAATTGTTTCTGGAGCTGATGATCAATCTGTCATAGTCTGGGATAAGCAAACTTTTAAACTTTTGGAGGAACTTAAGGGTCATGATGCACCGGTTAGTTCTGTCCGGATGCTCTCAAGAGAACGTGTTCTTACTGCATCTCATGATGGCACTGTCAAGATGTGGGATGTACGTACCGATACTTGTGTTGCTACTGTGGGTCGTTGTCAAAGTGCAGTTCTCTGTATGGAATATGATGACTCAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCACATGTCTGGG ] [+] EMBL OSS4642A [ ATTGGNTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTNGNACCGAACTAATGAAGTGAAGGTTGGNGCTACTGCAGNCAANACTGACCTACCTGCTGCACAAAAGAAANTTCAAACAAATATGAGGNCCCTTAGAGGACATACAGGTGCTATTACTGNTCTTCATTGTGTAACAAGGAAAGAGGTTTGGGNTCTTTTTGGTGATCGTGAAGATGCTGGTTTTTTCATCAGTGGAAGCACAGATTGCACGGTAAAAATATGGGATCCAAGTTTTGCGTGGTTCTGAACTTNGGACAACACTTNAAGGGCACACTAGGACAATTCGAGCANTTAGTTCAGGATCGTGGTAAAAATTGTTTCTGGGGCTGATGATCAATCTGTCA ] [+] EMBL CF319064 [ GGCTAGCTCTTTCAACCGAACTAATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGGGGACATACAGGTGCTATTACTGCTCTTCATTGTGTAACAAGGAAAGAGGTTTGGGATCTTGTTGGTGATCGTGAAGATGCTGGCTTTTTCATCAGTGGAAGCACAGATTGCACGGTAAAAATATGGGATCCAAG TTTGCGTGGTTCTGAACTTCGGACAACACTTAAAGGGCACACTAGGACAATTCGAGCAATTAGTTCA GATCGTGGT AAAATTGCTTCTGGAGCTGATGATCAATCTGTCATAGTCTGGGATAAGCAAACTTTTAAACTTTTGGAGGAACTTAAGGGTCATGATGCACCGGTTAGTTCTGTACGGATGCTCTGAGGAGAACGTGTTCTTACTGaa ] [+] EMBL CA765549 [ GACAATTCGAGCAATTAGTTCA GATCGTGGT AAAATTGTTTCTGGAGCTGATGATCAATCTGTCATAGTCTGGGATAAGCAAACTTTTAAACTTTTGGAGGAACTTAAGGGTCATGATGCACCGGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTTCTTACTGCATCTCATGATGGCACTGTCAAGATGTGGGATGTACGTACCGATACTTGTGTTGCTACTGTGGGTCGTTGTCAAAGTGCAGTTCTCTGTATGGAATATGATGACTCAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCACATGTCTGGGATATTCGTTCCAGTAAGCAGATGTTCAAGCTCCAAGGGCACACAAAGTGGATAAGATCAATGAGGATGACGGGTGAAACCATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTNCATCGTCCGCAAGAAAGATTCNGGGGGTTTCTCAAATACAGGATCAAAAGNTGCAGGATGGCAGCTTTACAGAACTNCCCANAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAANAATCTGCAG CGGNGGTCGCAACGGACTTNTTCGG ] [+] EMBL CB000040 [ GTTCTTACTGCATCTCATGATGGAACTGTCAAGATGTGGGATGTACGTACCGATACTCGTGTTGCTACTGTGGGTCGTTGTCAAAGTGCAGGTCTCTGTATGGAATATGATGACTCAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCAAATGTCTGGTATATTTCTTCCATTAAGAAGATGTTCAAGATCCGAGGACTCACAAAGTGGATAAGAT ] [-] EMBL CB646902 [ CAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCACATGTCTGGGATATTCGTTCCAGTAAGCAGATGTTCAAGCTCCAAGGGCACACAAAGTGGATAAGATCAATGAGGATGACGGGTGAAACCATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAG CGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATTTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGA ] [-] EMBL CB644667 [ GTGGCACATGTCTGGGATATTCGTTCCAGTAAGCAGATGTTCAAGCTCCAAGGGCACACAAAGTGGATAAGATCAATGAGGATGACGGGTGAAACCATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAG CGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAA A TTTATT G ] [-] EMBL CB633956 [ AGATCAATGAGGATGACGGGTGAAACTATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTTTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATTTGCAG CGGTGGTCGCAACGGACTTTTTCGGCTTTGGGATGCCACCACGAGTATTTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGGGCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTCGAAGAAAGG TTTATT GTTTTAGCCcattc ] [+] EMBL BQ906126 [ TACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAG CGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAANCCC A TTTATT GTTCTAGCCAAAAAAAAAAA] [+] EMBL AU225636 [ gccgctCTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCAGCGg ] [+] EMBL BQ906045 [ GAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTTCTGTCCATTAGTGCCAGTGATCATTTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCCGGTGGTCGCAACGGACTTCTTCGGCTTTGGGAT CCACCACGAGTAT TAAGTTATACCAGGACCCATGTCCATGTAAAG AAATGTCAATTGCACTG TGTGTTT TTGTATGTTATTAATTTTTTAGTGCCCCTCTGTATAAATAATATAGGAACTCAATATAAGTTCCATCCATTTTGGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGNATNTTTAGAAGAAA ATTTTATTNGTTCTA AAAAAA ] [+] EMBL AU091694 [ GACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAG CGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAaaaa ] consensusID : consensus_14785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [TCTCTTTCCCCGCGGACGCTCTTCCCCTCTGTTGCCACCCTATTCTGGCCCCCTCCTCTTGGTCAGGACCTCGCCCTCAAAAAAACGACTCGTCCCGCGCCTCCTTTGACGGGCTTATACGATTTTGGGAAAATGACGGAGGAATCAGGATGTGTCAACAACTCTACGCTTCCCTCCGAATATGTTCGTCCCTTTAGCGCCAGTGATCATTGGCTAGCAATAGATCCTGCTGACACCTCTATGTATCTTTTCCATCGTTCGCAAGAAAGATTCGGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTCCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATATGCAGCGGTGGTCGCACCGGTCTTATTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTGGTGTTTGTTGTATGTTATTAATTTTCTAGTGGCCCTCTGTATAAATAATATAGGAGCTCTATATAGGTTCCATCCATTTTTGTAATCTCAAAAGTCCTGCCCAGATTCCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAAAAAAA] [-] EMBL CA759808 [TCTCTTTCCCCGCGGACGCTCTTCCCCTCTGTTGCCACCCTATTCTGGCCCCCTCCTCTTGGTCAGGACCTCGCCCTCAAAAAAACGACTCGTCCCGCGCCTCCTTTGACGGGCTTATACGATTTTGGGAAAATGACGGAGGAATCAGGATGTGTCAACAACTCTACGCTTCCCTCCGAATATGTTCGTCCCTTTAGCGCCAGTGATCATTGGCTAGCAATAGATCCTGCTGACACCTCTATGTATCTTTTCCATCGTTCGCAAGAAAGATTCGGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTCCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATATGCAGCGGTGGTCGCACCGGTCTTATTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTGGTGTTTGTTGTATGTTATTAATTTTCTAGTGGCCCTCTGTATAAATAATATAGGAGCTCTATATAGGTTCCATCCATTTTTGTAATCTCAAAAGTCCTGCCCAGATTCCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAAAAAAA] consensusID : consensus_14785#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [ATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGTCCATTAGTGCCAGTGATCATTGGCTAGGAATAGGATGGCAGCTTTACAGAACTCCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATTTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCATTCTCAAAAAAAAAA] [-] EMBL CF319065 [ATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGTCCATTAGTGCCAGTGATCATTGGCTAGGAATAGGATGGCAGCTTTACAGAACTCCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATTTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCATTCTCAAAAAAAAAA] consensusID : consensus_14785#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [GACCAACCTACTACACNTACCCTCTTTTACCCAATNTCCGGCTAAGAAGAGATTCCGGGGGTTTCTCAGATTACCANGATCAAAAGTNCAGGATTGCAGCTTTACAGAANCTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGNCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAAAAAAAAAAAAAA] [+] EMBL AU086067 [GACCAACCTACTACACNTACCCTCTTTTACCCAATNTCCGGCTAAGAAGAGATTCCGGGGGTTTCTCAGATTACCANGATCAAAAGTNCAGGATTGCAGCTTTACAGAANCTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGNCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 GGACTGGGACTATCTGATATTGATTCTTGGAATATGATTGAGAAAATAGCTGAGAGAAAC 60 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 AACTTGGGTTACAAGCAGCTCATCAAACTTAGAGCATTGCTCACACATCTGCAACAACTG 120 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 CGCATTGGCTATTGGGGAGTCGCTACAGGGAAAGGACAACAACCGCCATCATATGGCATG 180 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 GCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGA 240 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 TTGGGTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCT 300 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 TTCAACCGAACTAATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCT 360 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 GCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGCTATTACT 420 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 GCTCTTCATTGTGTAACAAGGAAAGAGGTTTGGGNTCTTGTTGGTGATCGTGAAGATGCT 480 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 GGCTTTTTCATCAGTGGAAGCACAGATTGCACGGTAAAAATATGGGATCCAAGTTTGCGT 540 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 GGTTCTGAACTTCGGACAACACTTAAAGGGCACACTAGGACAATTCGAGCAATTAGTTCA 600 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 GATCGTGGTAAAATTGTTTCTGGAGCTGATGATCAATCTGTCATAGTCTGGGATAAGCAA 660 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 ACTTTTAAACTTTTGGAGGAACTTAAGGGTCATGATGCACCGGTTAGTTCTGTCCGGATG 720 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 CTCTCAGGAGAACGTGTTCTTACTGCATCTCATGATGGCACTGTCAAGATGTGGGATGTA 780 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 CGTACCGATACTTGTGTTGCTACTGTGGGTCGTTGTCAAAGTGCAGTTCTCTGTATGGAA 840 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 TATGATGACTCAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCACATGTCTGG 900 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ------------------------------------------------------------ consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 GATATTCGTTCCAGTAAGCAGATGTTCAAGCTCCAAGGGCACACAAAGTGGATAAGATCA 960 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 ----------------------------------------------------------TC 2 consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 ATGAGGATGACGGGTGAAACCATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGG 1020 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 TCTTTCCCCGCGGACGCTCTTCCCCTCTGTTGCCACCCTATTCTGGCCCCCTCCTCTTGG 62 consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 TCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGT 1080 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 TCAGGACCTCGCCCTCAAAAAAACGACTCGTCCCGCGCCTCCTTTGACGGGCTTATACGA 122 consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 GTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGT 1140 consensus_14785#2 ---------------------------ATCATCACGGGTTCCTCTGATGGGCTTATACGT 33 consensus_14785#1 TTTTGGGAAAATGACGGAGGAATCAGGATGTGTCAACAACTCTACGCTTCCCTCCGAATA 182 consensus_14785#3 ------------------------------------------------------------ consensus_14785#0 TTTTGGGAAAATGAAGGAGGAAT-AAGATGTGTCAAGAACCTTACGCTTCACTCGGCATC 1199 consensus_14785#2 TTTTGGGAAAATGAAGGAGGAAT-AAGATGTGTCAAGAACCTTACGCTTCACTCGGCATC 92 consensus_14785#1 TGTTCGTCCCTTTAGCGCCAGTGATCATTGGCTAGCAATAGATCCTGCTGACACCTCTAT 242 consensus_14785#3 --------------------------------GACCAACCTACTACACNTACCCTCTTTT 28 consensus_14785#0 TGTTCTGTCCATTAGTGCCAGTGATCATTGGCTAGGAATAGGTGCTGCTGACAACTCTAT 1259 consensus_14785#2 TGTTCTGTCCATTAGTGCCAGTGATCATTGGCTAGGAATAGG------------------ 134 * ** consensus_14785#1 GTATCTTTTCCATCGTTCGCAAGAAAGATTCGGGGGTTTCTCAAATA--CAGGATCAAAA 300 consensus_14785#3 ACCCAATNTCCG--GCTAAGAAGAGAT-TCCGGGGGTTTCTCAGATTACCANGATCAAAA 85 consensus_14785#0 GTCTCTTTTCCATCGTCCGCAAGAAAGATTCGGGGGTTTCTCAAATA--CAGGATCAAAA 1317 consensus_14785#2 ------------------------------------------------------------ consensus_14785#1 GTTGCAGGATGGCAGCTTTACAGAAC-TCCCCAGAAAACTCCTGCTATGGTGAGATGTGT 359 consensus_14785#3 GTN-CAGGATTGCAGCTTTACAGAANCTCCCCAGAAAACTGCTGCTATGGTGAGATGTGT 144 consensus_14785#0 GTTGCAGGATGGCAGCTTTACAGAACTCCCC-AGAAAACTGCTGCTATGGTGAGATGTGT 1376 consensus_14785#2 --------ATGGCAGCTTTACAGAACTCCCCCAGAAAACTGCTGCTATGGTGAGATGTGT 186 ** ************** *** ******** ******************* consensus_14785#1 AGCATCGGACCTGGATCGGAAAAGAATATGCAGCGGTGGTCGC-ACCGGTCTTATTCGGC 418 consensus_14785#3 AGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGNCAACGGACTTCTTCGGC 204 consensus_14785#0 AGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGC-AACGGACTTCTTCGGC 1435 consensus_14785#2 AGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGC-AACGGACTTCTTCGGC 245 *************************** ************** * *** *** ****** consensus_14785#1 TTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAAT 478 consensus_14785#3 TTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAAT 264 consensus_14785#0 TTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAAT 1495 consensus_14785#2 TTTGGGATGCCACCACGAGTATTTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAAT 305 ********************** ************************************* consensus_14785#1 GTCAATTGCACTGTGGTGTTTGTTGTATGTTATTAATTTTCTAGTGGCCCTCTGTATAAA 538 consensus_14785#3 GTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAA 324 consensus_14785#0 GTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAA 1555 consensus_14785#2 GTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAA 365 ************** ************************* ******************* consensus_14785#1 TAATATAGGAGCTCTATATAGGTTCCATCCATTTTTGTAATCTCAAAAGTCCTGCCCAGA 598 consensus_14785#3 TAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGA 384 consensus_14785#0 TAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGA 1615 consensus_14785#2 TAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGA 425 ********** ********* **************************** ********** consensus_14785#1 TTCCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAA 658 consensus_14785#3 TACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAA 444 consensus_14785#0 TACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCAA-----A 1670 consensus_14785#2 TACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCATTCTCA 485 * ************************************************** * * consensus_14785#1 AAAAA------- 663 consensus_14785#3 AAAAAAAAAAAA 456 consensus_14785#0 AAAAAAAA---- 1678 consensus_14785#2 AAAAAAAAA--- 494 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||