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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1678 fasta sequence
[GGACTGGGACTATCTGATATTGATTCTTGGAATATGATTGAGAAAATAGCTGAGAGAAACAACTTGGGTTACAAGCAGCTCATCAAACTTAGAGCATTGCTCACACATCTGCAACAACTGCGCATTGGCTATTGGGGAGTCGCTACAGGGAAAGGACAACAACCGCCATCATATGGCATGGCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGATTGGGTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGCTATTACTGCTCTTCATTGTGTAACAAGGAAAGAGGTTTGGGNTCTTGTTGGTGATCGTGAAGATGCTGGCTTTTTCATCAGTGGAAGCACAGATTGCACGGTAAAAATATGGGATCCAAG-TTTGCGTGGTTCTGAACTTCGGACAACACTTAAAGGGCACACTAGGACAATTCGAGCAATTAGTTCA-GATCGTGGT-AAAATTGTTTCTGGAGCTGATGATCAATCTGTCATAGTCTGGGATAAGCAAACTTTTAAACTTTTGGAGGAACTTAAGGGTCATGATGCACCGGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTTCTTACTGCATCTCATGATGGCACTGTCAAGATGTGGGATGTACGTACCGATACTTGTGTTGCTACTGTGGGTCGTTGTCAAAGTGCAGTTCTCTGTATGGAATATGATGACTCAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCACATGTCTGGGATATTCGTTCCAGTAAGCAGATGTTCAAGCTCCAAGGGCACACAAAGTGGATAAGATCAATGAGGATGACGGGTGAAACCATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG-TTCTGTCCATTAGTGCCAGTGATCA-TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC-GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAG-CGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAA-A-TTTATT-GTTCTAGCCAAAAAAAAAAA]
[+] EMBL OSS13724A [GGACTGGGACTATCTGATATTGATTCTTGGAATATGATTGAGAAAATAGCTGAGAGAAACAACTTGGGTTACAAGCAGCTCATCAAACTTAGAGCATTGCTCACACATCTGCAACAACTGCGCATTGGCTATTGGGGAGTCGCTACAGGGAAAGGACAACAACCGCCATCATATGGCATGGCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGATTGGGTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGCCAGAAGCTTAAGGGCT ]
[+] EMBL CA999681 [ CTTGGGTTACAAGCAGCTCATCAAACTTAGAGCATTGCTCACACATCTGCAACAACTGCGCATTGGCTATTGGGGAGTCGCTACAGGGAAAGGACAACAACCGCCATCATATGGCATGGCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGATTGGGT ]
[+] EMBL AU030297 [ GGTTACAAGCAGCTCATCAAACTTAGAGCATTGCTCACACATCTGCAACAACTGCGCATTGGCTATTGGGGAGTCGCTACAGGGAAAGGACAACAACCGCCATCATATGGCATGGCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGATTGGGTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGCTATTACTGCTC TCATTGTGT ACAAGGAAAGAGGTTT GGNTCTTGTTGGT ATCGTGAA ATGCTGGCTTTTca ]
[+] EMBL CB646901 [ CAACAACCGCCATCATATGGCATGGCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGATTGGGTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGCTATTACTGCTCTTCATTGTGTAACAAGGAAAGAGGTTTGGGATCTTGTTGGTGATCGTGAAGATGCTGGCTTTTTCATCAGTGGAAGCACAGATTGCACGGTAAAAATATGGGATCCAAG TTTGCGTGGTTCTGAACTTCGGACAACACTTAAAGGGCACACTAGGACAATTCGAGCAATTAGTTCA GATCGTGGT AAAATTGTTTCTGGAGCTGATGATCAATCTGTCATAGTCTGGGATAAGCAAACTTTTAAACTTTTGGAGGAACTTAAGGGTCATGATGCACCGGTTAGTTCTGTCCGGATGCTCTCAAGAGAACGTGTTCTTACTGCATCTCATGATGGCACTGTCAAGATGTGGGATGTACGTACCGATACTTGTGTTGCTACTGTGGGTCGTTGTCAAAGTGCAGTTCTCTGTATGGAATATGATGACTCAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCACATGTCTGGG ]
[+] EMBL OSS4642A [ ATTGGNTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTNGNACCGAACTAATGAAGTGAAGGTTGGNGCTACTGCAGNCAANACTGACCTACCTGCTGCACAAAAGAAANTTCAAACAAATATGAGGNCCCTTAGAGGACATACAGGTGCTATTACTGNTCTTCATTGTGTAACAAGGAAAGAGGTTTGGGNTCTTTTTGGTGATCGTGAAGATGCTGGTTTTTTCATCAGTGGAAGCACAGATTGCACGGTAAAAATATGGGATCCAAGTTTTGCGTGGTTCTGAACTTNGGACAACACTTNAAGGGCACACTAGGACAATTCGAGCANTTAGTTCAGGATCGTGGTAAAAATTGTTTCTGGGGCTGATGATCAATCTGTCA ]
[+] EMBL CF319064 [ GGCTAGCTCTTTCAACCGAACTAATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGGGGACATACAGGTGCTATTACTGCTCTTCATTGTGTAACAAGGAAAGAGGTTTGGGATCTTGTTGGTGATCGTGAAGATGCTGGCTTTTTCATCAGTGGAAGCACAGATTGCACGGTAAAAATATGGGATCCAAG TTTGCGTGGTTCTGAACTTCGGACAACACTTAAAGGGCACACTAGGACAATTCGAGCAATTAGTTCA GATCGTGGT AAAATTGCTTCTGGAGCTGATGATCAATCTGTCATAGTCTGGGATAAGCAAACTTTTAAACTTTTGGAGGAACTTAAGGGTCATGATGCACCGGTTAGTTCTGTACGGATGCTCTGAGGAGAACGTGTTCTTACTGaa ]
[+] EMBL CA765549 [ GACAATTCGAGCAATTAGTTCA GATCGTGGT AAAATTGTTTCTGGAGCTGATGATCAATCTGTCATAGTCTGGGATAAGCAAACTTTTAAACTTTTGGAGGAACTTAAGGGTCATGATGCACCGGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTTCTTACTGCATCTCATGATGGCACTGTCAAGATGTGGGATGTACGTACCGATACTTGTGTTGCTACTGTGGGTCGTTGTCAAAGTGCAGTTCTCTGTATGGAATATGATGACTCAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCACATGTCTGGGATATTCGTTCCAGTAAGCAGATGTTCAAGCTCCAAGGGCACACAAAGTGGATAAGATCAATGAGGATGACGGGTGAAACCATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTNCATCGTCCGCAAGAAAGATTCNGGGGGTTTCTCAAATACAGGATCAAAAGNTGCAGGATGGCAGCTTTACAGAACTNCCCANAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAANAATCTGCAG CGGNGGTCGCAACGGACTTNTTCGG ]
[+] EMBL CB000040 [ GTTCTTACTGCATCTCATGATGGAACTGTCAAGATGTGGGATGTACGTACCGATACTCGTGTTGCTACTGTGGGTCGTTGTCAAAGTGCAGGTCTCTGTATGGAATATGATGACTCAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCAAATGTCTGGTATATTTCTTCCATTAAGAAGATGTTCAAGATCCGAGGACTCACAAAGTGGATAAGAT ]
[-] EMBL CB646902 [ CAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCACATGTCTGGGATATTCGTTCCAGTAAGCAGATGTTCAAGCTCCAAGGGCACACAAAGTGGATAAGATCAATGAGGATGACGGGTGAAACCATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAG CGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATTTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGA ]
[-] EMBL CB644667 [ GTGGCACATGTCTGGGATATTCGTTCCAGTAAGCAGATGTTCAAGCTCCAAGGGCACACAAAGTGGATAAGATCAATGAGGATGACGGGTGAAACCATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAG CGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAA A TTTATT G ]
[-] EMBL CB633956 [ AGATCAATGAGGATGACGGGTGAAACTATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTTTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATTTGCAG CGGTGGTCGCAACGGACTTTTTCGGCTTTGGGATGCCACCACGAGTATTTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGGGCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTCGAAGAAAGG TTTATT GTTTTAGCCcattc ]
[+] EMBL BQ906126 [ TACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAG CGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAANCCC A TTTATT GTTCTAGCCAAAAAAAAAAA]
[+] EMBL AU225636 [ gccgctCTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTG TTCTGTCCATTAGTGCCAGTGATCA TTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCAGCGg ]
[+] EMBL BQ906045 [ GAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTTCTGTCCATTAGTGCCAGTGATCATTTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCCGGTGGTCGCAACGGACTTCTTCGGCTTTGGGAT CCACCACGAGTAT TAAGTTATACCAGGACCCATGTCCATGTAAAG AAATGTCAATTGCACTG TGTGTTT TTGTATGTTATTAATTTTTTAGTGCCCCTCTGTATAAATAATATAGGAACTCAATATAAGTTCCATCCATTTTGGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGNATNTTTAGAAGAAA ATTTTATTNGTTCTA AAAAAA ]
[+] EMBL AU091694 [ GACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTC GGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAG CGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAaaaa ]
consensusID : consensus_14785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[TCTCTTTCCCCGCGGACGCTCTTCCCCTCTGTTGCCACCCTATTCTGGCCCCCTCCTCTTGGTCAGGACCTCGCCCTCAAAAAAACGACTCGTCCCGCGCCTCCTTTGACGGGCTTATACGATTTTGGGAAAATGACGGAGGAATCAGGATGTGTCAACAACTCTACGCTTCCCTCCGAATATGTTCGTCCCTTTAGCGCCAGTGATCATTGGCTAGCAATAGATCCTGCTGACACCTCTATGTATCTTTTCCATCGTTCGCAAGAAAGATTCGGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTCCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATATGCAGCGGTGGTCGCACCGGTCTTATTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTGGTGTTTGTTGTATGTTATTAATTTTCTAGTGGCCCTCTGTATAAATAATATAGGAGCTCTATATAGGTTCCATCCATTTTTGTAATCTCAAAAGTCCTGCCCAGATTCCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAAAAAAA]
[-] EMBL CA759808 [TCTCTTTCCCCGCGGACGCTCTTCCCCTCTGTTGCCACCCTATTCTGGCCCCCTCCTCTTGGTCAGGACCTCGCCCTCAAAAAAACGACTCGTCCCGCGCCTCCTTTGACGGGCTTATACGATTTTGGGAAAATGACGGAGGAATCAGGATGTGTCAACAACTCTACGCTTCCCTCCGAATATGTTCGTCCCTTTAGCGCCAGTGATCATTGGCTAGCAATAGATCCTGCTGACACCTCTATGTATCTTTTCCATCGTTCGCAAGAAAGATTCGGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTCCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATATGCAGCGGTGGTCGCACCGGTCTTATTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTGGTGTTTGTTGTATGTTATTAATTTTCTAGTGGCCCTCTGTATAAATAATATAGGAGCTCTATATAGGTTCCATCCATTTTTGTAATCTCAAAAGTCCTGCCCAGATTCCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAAAAAAA]
consensusID : consensus_14785#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[ATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGTCCATTAGTGCCAGTGATCATTGGCTAGGAATAGGATGGCAGCTTTACAGAACTCCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATTTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCATTCTCAAAAAAAAAA]
[-] EMBL CF319065 [ATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGTCCATTAGTGCCAGTGATCATTGGCTAGGAATAGGATGGCAGCTTTACAGAACTCCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATTTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCATTCTCAAAAAAAAAA]
consensusID : consensus_14785#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence
[GACCAACCTACTACACNTACCCTCTTTTACCCAATNTCCGGCTAAGAAGAGATTCCGGGGGTTTCTCAGATTACCANGATCAAAAGTNCAGGATTGCAGCTTTACAGAANCTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGNCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU086067 [GACCAACCTACTACACNTACCCTCTTTTACCCAATNTCCGGCTAAGAAGAGATTCCGGGGGTTTCTCAGATTACCANGATCAAAAGTNCAGGATTGCAGCTTTACAGAANCTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGNCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 GGACTGGGACTATCTGATATTGATTCTTGGAATATGATTGAGAAAATAGCTGAGAGAAAC 60
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 AACTTGGGTTACAAGCAGCTCATCAAACTTAGAGCATTGCTCACACATCTGCAACAACTG 120
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 CGCATTGGCTATTGGGGAGTCGCTACAGGGAAAGGACAACAACCGCCATCATATGGCATG 180
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 GCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGA 240
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 TTGGGTCGAAATTGGGTGCAAAGCATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCT 300
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 TTCAACCGAACTAATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCT 360
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 GCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGCTATTACT 420
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 GCTCTTCATTGTGTAACAAGGAAAGAGGTTTGGGNTCTTGTTGGTGATCGTGAAGATGCT 480
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 GGCTTTTTCATCAGTGGAAGCACAGATTGCACGGTAAAAATATGGGATCCAAGTTTGCGT 540
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 GGTTCTGAACTTCGGACAACACTTAAAGGGCACACTAGGACAATTCGAGCAATTAGTTCA 600
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 GATCGTGGTAAAATTGTTTCTGGAGCTGATGATCAATCTGTCATAGTCTGGGATAAGCAA 660
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 ACTTTTAAACTTTTGGAGGAACTTAAGGGTCATGATGCACCGGTTAGTTCTGTCCGGATG 720
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 CTCTCAGGAGAACGTGTTCTTACTGCATCTCATGATGGCACTGTCAAGATGTGGGATGTA 780
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 CGTACCGATACTTGTGTTGCTACTGTGGGTCGTTGTCAAAGTGCAGTTCTCTGTATGGAA 840
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 TATGATGACTCAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCACATGTCTGG 900
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ------------------------------------------------------------
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 GATATTCGTTCCAGTAAGCAGATGTTCAAGCTCCAAGGGCACACAAAGTGGATAAGATCA 960
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 ----------------------------------------------------------TC 2
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 ATGAGGATGACGGGTGAAACCATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGG 1020
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 TCTTTCCCCGCGGACGCTCTTCCCCTCTGTTGCCACCCTATTCTGGCCCCCTCCTCTTGG 62
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 TCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGT 1080
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 TCAGGACCTCGCCCTCAAAAAAACGACTCGTCCCGCGCCTCCTTTGACGGGCTTATACGA 122
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 GTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGT 1140
consensus_14785#2 ---------------------------ATCATCACGGGTTCCTCTGATGGGCTTATACGT 33
consensus_14785#1 TTTTGGGAAAATGACGGAGGAATCAGGATGTGTCAACAACTCTACGCTTCCCTCCGAATA 182
consensus_14785#3 ------------------------------------------------------------
consensus_14785#0 TTTTGGGAAAATGAAGGAGGAAT-AAGATGTGTCAAGAACCTTACGCTTCACTCGGCATC 1199
consensus_14785#2 TTTTGGGAAAATGAAGGAGGAAT-AAGATGTGTCAAGAACCTTACGCTTCACTCGGCATC 92
consensus_14785#1 TGTTCGTCCCTTTAGCGCCAGTGATCATTGGCTAGCAATAGATCCTGCTGACACCTCTAT 242
consensus_14785#3 --------------------------------GACCAACCTACTACACNTACCCTCTTTT 28
consensus_14785#0 TGTTCTGTCCATTAGTGCCAGTGATCATTGGCTAGGAATAGGTGCTGCTGACAACTCTAT 1259
consensus_14785#2 TGTTCTGTCCATTAGTGCCAGTGATCATTGGCTAGGAATAGG------------------ 134
* **
consensus_14785#1 GTATCTTTTCCATCGTTCGCAAGAAAGATTCGGGGGTTTCTCAAATA--CAGGATCAAAA 300
consensus_14785#3 ACCCAATNTCCG--GCTAAGAAGAGAT-TCCGGGGGTTTCTCAGATTACCANGATCAAAA 85
consensus_14785#0 GTCTCTTTTCCATCGTCCGCAAGAAAGATTCGGGGGTTTCTCAAATA--CAGGATCAAAA 1317
consensus_14785#2 ------------------------------------------------------------
consensus_14785#1 GTTGCAGGATGGCAGCTTTACAGAAC-TCCCCAGAAAACTCCTGCTATGGTGAGATGTGT 359
consensus_14785#3 GTN-CAGGATTGCAGCTTTACAGAANCTCCCCAGAAAACTGCTGCTATGGTGAGATGTGT 144
consensus_14785#0 GTTGCAGGATGGCAGCTTTACAGAACTCCCC-AGAAAACTGCTGCTATGGTGAGATGTGT 1376
consensus_14785#2 --------ATGGCAGCTTTACAGAACTCCCCCAGAAAACTGCTGCTATGGTGAGATGTGT 186
** ************** *** ******** *******************
consensus_14785#1 AGCATCGGACCTGGATCGGAAAAGAATATGCAGCGGTGGTCGC-ACCGGTCTTATTCGGC 418
consensus_14785#3 AGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGNCAACGGACTTCTTCGGC 204
consensus_14785#0 AGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGC-AACGGACTTCTTCGGC 1435
consensus_14785#2 AGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTCGC-AACGGACTTCTTCGGC 245
*************************** ************** * *** *** ******
consensus_14785#1 TTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAAT 478
consensus_14785#3 TTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAAT 264
consensus_14785#0 TTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAAT 1495
consensus_14785#2 TTTGGGATGCCACCACGAGTATTTAAGTTATACCAGGACCCATGTCCATGTAAAGAAAAT 305
********************** *************************************
consensus_14785#1 GTCAATTGCACTGTGGTGTTTGTTGTATGTTATTAATTTTCTAGTGGCCCTCTGTATAAA 538
consensus_14785#3 GTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAA 324
consensus_14785#0 GTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAA 1555
consensus_14785#2 GTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTTTAGTGGCCCTCTGTATAAA 365
************** ************************* *******************
consensus_14785#1 TAATATAGGAGCTCTATATAGGTTCCATCCATTTTTGTAATCTCAAAAGTCCTGCCCAGA 598
consensus_14785#3 TAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGA 384
consensus_14785#0 TAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGA 1615
consensus_14785#2 TAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAATCTCAAAAGACCTGCCCAGA 425
********** ********* **************************** **********
consensus_14785#1 TTCCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAA 658
consensus_14785#3 TACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCAAAAAAA 444
consensus_14785#0 TACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCAA-----A 1670
consensus_14785#2 TACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTATTGTTCTAGCCCATTCTCA 485
* ************************************************** * *
consensus_14785#1 AAAAA------- 663
consensus_14785#3 AAAAAAAAAAAA 456
consensus_14785#0 AAAAAAAA---- 1678
consensus_14785#2 AAAAAAAAA--- 494
*****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||