These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14812#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 2084 fasta sequence [TACGCGGCCGGAGAGAGGAGGGGGGAAGAGAGGATCTCGCAGAGCGCCATAGCCTCGGATCCAGAAGCGGAATTCGGTGGAGGTCTCGGGCACCTGGATCGATCGGAGGAAGGGAAGGCGGAGCAGCGGTGATGGGGAAGGCGGCGGCGGTGGGGACGGCGGTGGTGGTGGCCGCGGCGGTCGGGGTGGCGGTGGTGCTGGCGCGGAGGCGGAGGAGGAGGGACCTGGAGCTGGTGGAGGGAGCCGCGGCGGAGAGGAAGAGGAAGGTGGCGGCGGTGATCGAGGACGTGGAGCACGCGCTGTCGACCCCGACGGCGCTGCTGCGGGGCATCTCGGACGCCATGGTCACCGAGATGGAGCGAGGCCTGCGCGGGGACAGCCACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCGCGTCCTGCGAGTCCAAC-TCGGTGGCAAGGAGAAACGTGTCGT-CCAACAACAGTACGA-GGAAG-TC-TCAA-TTCCACCACATCTGATGGTTGGAAC-TTCCATGGAACTG-TTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATAC-TGAAGGTGATGATTTCCA-CCTCCCAGAAGGGAGACAGAGAGAGC-TGGGCTTCACCTTTTCCTTCCCAGTGAGCCAGACATCAATATCGTCAGGAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCGGTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGATTAGATATGAAAATTGCAGCATTGGTTAATGACACTGTCGGCACATTGGCTGGTGGGAGGTATGCGGATAACAGTGTTGTTGCTGCTATAATATTGGGCACTGGTACAAATGCAGCATATGTTGAGAATGCTAATGCAATTCCTAAATGGACCGGTTTACTGCCTAGGTCCGGAAATATGGT-AATCAACACAGAATGGGGGAGCTTTAAATCAGATAAGCTTCCTCTTTCAGAATTCGATAAAGCAATGGATTTTGAAAGCTTGAATCCTGGAGAGCAGATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGAATCTTGCTGAAGCTTGCTCATGATGCAGCTTTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAGGACACCGGATATGTCAGCCATGCATCATGACTCGTCACATGACCTTAAAACTGTTGGAGCTAAGCTAAAGGATATCGTCGGGGTCCCAGATACTTCCCTGGAAGTAAGATACATTACCAGTCACATTTGTGACATAGTTGCAGAGCGTGCTGCACGCTTGGCTGCTGCTGGCATATATGGGGTCCTAAAGAAGCTAGGTCGGGACAAGATGCCAAAAGACGGCAGTAAGATGCCTAGGACTGTCATTGCCTTGGATGGTGGGCTCTATGAACATTACAAGAAGTTCAGCAGTTGCTTAGAATCAACTCTAACAGACCTTCTTGGGGATGATGTCTCGTCTTCGGTGGTTACCAAGCTGGCCAACGATGGTTCTGGCATTGGAGCTGCTCTTCTCGCAGCCTCGCACT-CCCAGTATG-C-CGAGATCGACTAGCTTTAAGGATGATCTTGATGAATGATGAATCAAACTCCGTTTGTAGGTTCTCATTTCCCCCTTCAAAAT-CCACATAATACTCCTGGCTCCCCCCTTGAAATCTTACCATCTTTTTTTGGCTATTCTGA-GGG---CAAACA-TAAGTG-CCTCTG-CAGCGGGATATAGCTAGTATAGCGCCAATGAGTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACA-GGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCCTTAATTGATGTTGAGAACCAAGATTTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAAGGGGACATAATCTAATTGCTCTTGTTTGATCTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK065207 [TACGCGGCCGGAGAGAGGAGGGGGGAAGAGAGGATCTCGCAGAGCGCCATAGCCTCGGATCCAGAAGCGGAATTCGGTGGAGGTCTCGGGCACCTGGATCGATCGGAGGAAGGGAAGGCGGAGCAGCGGTGATGGGGAAGGCGGCGGCGGTGGGGACGGCGGTGGTGGTGGCCGCGGCGGTCGGGGTGGCGGTGGTGCTGGCGCGGAGGCGGAGGAGGAGGGACCTGGAGCTGGTGGAGGGAGCCGCGGCGGAGAGGAAGAGGAAGGTGGCGGCGGTGATCGAGGACGTGGAGCACGCGCTGTCGACCCCGACGGCGCTGCTGCGGGGCATCTCGGACGCCATGGTCACCGAGATGGAGCGAGGCCTGCGCGGGGACAGCCACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCGCGTCCTGCGAGTCCAAC TCGGTGGCAAGGAGAAACGTGTCGT CCAACAACAGTACGA GGAAG TC TCAA TTCCACCACATCTGATGGTTGGAAC TTCCATGGAACTG TTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATAC TGAAGGTGATGATTTCCA CCCCCCAGAAGGGAGACAGAGAGAGC TGGGCTTCACCTTTTCCTTCCCAGTGAGCCAGACATCAATATCGTCAGGAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCGGTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGATTAGATATGAAAATTGCAGCATTGGTTAATGACACTGTCGGCACATTGGCTGGTGGGAGGTATGCGGATAACAGTGTTGTTGCTGCTATAATATTGGGCACTGGTACAAATGCAGCATATGTTGAGAATGCTAATGCAATTCCTAAATGGACCGGTTTACTGCCTAGGTCCGGAAATATGGT AATCAACACAGAATGGGGGAGCTTTAAATCAGATAAGCTTCCTCTTTCAGAATTCGATAAAGCAATGGATTTTGAAAGCTTGAATCCTGGAGAGCAGATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGAATCTTGCTGAAGCTTGCTCATGATGCAGCTTTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAGGACACCGGATATGTCAGCCATGCATCATGACTCGTCACATGACCTTAAAACTGTTGGAGCTAAGCTAAAGGATATCGTCGGGGTCCCAGATACTTCCCTGGAAGTAAGATACATTACCAGTCACATTTGTGACATAGTTGCAGAGCGTGCTGCACGCTTGGCTGCTGCTGGCATATATGGGGTCCTAAAGAAGCTAGGTCGGGACAAGATGCCAAAAGACGGCAGTAAGATGCCTAGGACTGTCATTGCCTTGGATGGTGGGCTCTATGAACATTACAAGAAGTTCAGCAGTTGCTTAGAATCAACTCTAACAGACCTTCTTGGGGATGATGTCTCGTCTTCGGTGGTTACCAAGCTGGCCAACGATGGTTCTGGCATTGGAGCTGCTCTTCTCGCAGCCTCGCACT CCCAGTATG C CGAGATCGACTAGCTTTAAGGATGATCTTGATGAATGATGAATCAAACTCCGTTTGTAGGTTCTCATTTCCCCCTTCAAAAT CCACATAATACTCCTGGCTCCCCCCTTGAAATCTTACCATCTTTTTTTGGCTATTCTGA GGG CAAACA TAAGTG CCTCTG CAGCGGGATATAGCTAGTATAGCGCCAATGAGTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACA GGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCCTTAATTGATGTTGAGAACCAAGATTTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAAGGGGACATAATC ] [+] EMBL AF372831 [ AAGGGAAGGCGGAGCAGCGGTGATGGGGAAGGCGGCGGCGGTGGGGACGGCGGTGGTGGTGGCCGCGGCGGTCGGGGTGGCGGTGGTGCTGGCGCGGAGGCGGAGGAGGAGGGACCTGGAGCTGGTGGAGGGAGCCGCGGCGGAGAGGAAGAGGAAGGTGGCGGCGGTGATCGAGGACGTGGAGCACGCGCTGTCGACCCCGACGGCGCTGCTGCGGGGCATCTCGGACGCCATGGTCACCGAGATGGAGCGAGGCCTGCGCGGGGACAGCCACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCGCGTCCTGCGAGTCCAAC TCGGTGGCAAGGAGAAACGTGTCGT CCAACAACAGTACGA GGAAG TC TCAA TTCCACCACATCTGATGGTTGGAAC TTCCATGGAACTG TTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATAC TGAAGGTGATGATTTCCA CCTCCCAGAAGGGAGACAGAGAGAGC TGGGCTTCACCTTTTCCTTCCCAGTGAGCCAGACATCAATATCGTCAGGAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCGGTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGATTAGATATGAAAATTGCAGCATTGGTTAATGACACTGTCGGCACATTGGCTGGTGGGAGGTATGCGGATAACAGTGTTGTTGCTGCTATAATATTGGGCACTGGTACAAATGCAGCATATGTTGAGAATGCTAATGCAATTCCTAAATGGACCGGTTTACTGCCTAGGTCCGGAAATATGGT AATCAACACAGAATGGGGGAGCTTTAAATCAGATAAGCTTCCTCTTTCAGAATTCGATAAAGCAATGGATTTTGAAAGCTTGAATCCTGGAGAGCAGATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGAATCTTGCTGAAGCTTGCTCATGATGCAGCTTTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAGGACACCGGATATGTCAGCCATGCATCATGACTCGTCACATGACCTTAAAACTGTTGGAGCTAAGCTAAAGGATATCGTCGGGGTCCCAGATACTTCCCTGGAAGTAAGATACATTACCAGTCACATTTGTGACATAGTTGCAGAGCGTGCTGCACGCTTGGCTGCTGCTGGCATATATGGGGTCCTAAAGAAGCTAGGTCGGGACAAGATGCCAAAAGACGGCAGTAAGATGCCTAGGACTGTCATTGCCTTGGATGGTGGGCTCTATGAACATTACAAGAAGTTCAGCAGTTGCTTAGAATCAACTCTAACAGACCTTCTTGGGGATGATGTCTCGTCTTCGGTGGTTACCAAGCTGGCCAACGATGGTTCTGGCATTGGAGCTGCTCTTCTCGCAGCCTCGCACT CCCAGTATG C CGAGATCGACTAGCTTTAAGGATGATCTTGATGAATGATGAATCAAACTCCGTTTGTAGGTTCTCATTTCCCCCTTCAAAAT CCACATAATACTCCTGGCTCCCCCCTTGAAATCTTACCATCTTTTTTTGGCTATTCTGA GGG CAAACA TAAGTG CCTCTG CAGCGGGATATAGCTAGTATAGCGCCAATGAGTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACA GGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCCTTAATTGATGTTGAGAACCAAGATTTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAAGGGGACATAATCTAATTGCTCTTGTTTGATCTCATAAAAAAAAAAAAAAAAAA ] [+] EMBL CB634665 [ TGGAGGCAGCCGCGGCGGAGAGGAAGAGGAAGGTGGCGGCGGTGATCGAGGACGTGGAGCACGCGCTGTCGACCCCGACGGCGCTGCTGCGGGGCATCTCGGACGCCATGGTCACCGAGATGGAGCGAGGCCTGCGCGGGGACGGCCACGCCATGGTCAAGATGCTTATCACCTACGTCGACAACCTCCCCACCGGAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCGCGTCCTGCGAGTCCAAC TCGGTGGCAAGGAGAAACGTGTCGT CCAACAACAGTACGA GGAAG TC TCAA TTCCACCACATCTGATGGTTGGAAC TTCCATGGAACTG TTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATAC TGAAGGTGATGATTTCCA CCTCCCAGAAGGGAGACAGAGAGAGC TGGGCTTCACCTTTTCCTTCCCAGTGAGCCAGACATCAATATCGTCAGGAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCGGTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGATTAGATATGAAAATTACAGCATTGGTTAATGACACTGTCGGCACATTGGCTGGTGGGAGGTATGCGGATAACAGTGTTGTTGCTGCTATAATATTGGGCACTGGTACAAATGCAGCATATGTTGAGAATGCTAATGCAATTCCTAAATGGACCGGTTTACTGCCTANGTCCGGAAATATGGTAAATC ACACAGAATGGGGGAGCTTTAAATCAGATAAGCTTCCTCTTTCAGAATTCGATAAAGCAATGGATTTTGAAAG ] [+] EMBL AU064311 [ AGGAAGAGGAAGGTGGCGGCGGTGATCGAGGACGTGGAGCACGCGCTGTCGACCCCGACGGCGCTGCTGCGGGGCATCTCGGACGCCATGGTCACCGAGATGGAGCGAGGCCTGCGCGGGGACAGCCACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCGCGTCCTGCGAGTCCAAC TCGGTGGCAAGGAGAAACGTGTCGT CCAACAACAGTACGA GGAAG TC TCAA TTCCACCACATCTGATGGTTGGAACTTTCCATGGAACTGTTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTTGAAGGTGATGATTTCCACCCTCCCAGAAGGGAGACAAAGAGAGCTTGGGTTTAACTTTTTCCT ] [+] EMBL AU164178 [ AGGAAGAGGAAGGTGGCGGCGGTGATCGAGGACGTGGAGCACGCGCTGTCGACCCCGACGGCGCTGCTGCGGGGCATCTCGGACGCCATGGTCACCGAGATGGAGCGAGGCCTGCNCGGGGACAGCCACGCCATGGTTAANATGCTCATCACCTACGTCGACAACCTCCCCACCGGAAATNAACAGGGGTTGTTTTATGCATTGGNTCTTGGAGGAACCAACTTCCGCGTCCTGCGAGTCCAAC TCGGTGGCAAGGAGAAACGTGTCGT CCAACAACAGTACGA GGAAG TC TCAA TTCCACCACATCTGATGGTTGGAAC TTCCATGGAACTG TTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATAC TTAAGGTGATGATTTCCA CCTTCCAGAAGGGAGACAGAGAGAGCTTGGGTTTAACCTTTTTCCTNCCAGTG ] [+] EMBL AU091928 [ AGGAAGAGGAAGGTGGCGGCGGTGATCGAGGACGTGGNGCACGCGCTGTCGACCCCGACGGCGCTGCTGCGGGGCATCTCGGACGCCATGGTCACCGAGATGGAGCGAGGCCTGCGCGGGGACAGCCACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCGCGTCCTGCGAGTCCAAC TCGGTGGCAAGGAGAAACGTGTCGT CCAACAACAGTACGA GGAAG TC TCAA TTNCACCACATCTGATGGTTGG AC TTCCATGG ACTG TTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATAC TG AGGTGATGAT ] [+] EMBL AU164259 [ AGGAAGAGGAAGGTGGCGGCGGTGATCGAGGACGTGGNGCACGCGCTGTCGACCCCGACGGCGCTGCTGCGGGGCATCTCGGACGCCATGGTCACCGAGATGGAGCGAGGCCTGCGCGGGGACAGCCACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCGCGTCCTGCGAGTCCAACTTCGGTGGCAAGGAGAAACGTGTCGTNCCAACAACAGTACGAGGGAAG TCTTCAATTTCCACCACATC ] [+] EMBL AU182675 [ AGGAAGAGGAAGGTGGCGGCGGTGATCGAGGACGTGGAGCACGCGCTGTCGACCCCGACGGCGCTGNTGCGGGGCATCTCGGACGCCATGGTCACCGAGATGGAGCGAGGCCTGCGCGGGGACTTTNACGCCATGGTTAANATGCTCATCACCTACGTCGACAACCTCCCCACCGGAAATGAACAGGGGTTGTTTNATGCATTGGATCTTGGAGGAACCAACTTCCGCGTCCTGCGAGTCCAAC TCGGTGGCAAGGAGAAACGTGTCGT CCAACAACAGTNCGA GGAAGTTC TNAA T ] [+] EMBL CA999334 [ TGGAGAGCAGATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGAATCTTGCTGAAGCTTGCTCATGATGCAGCTTTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAGGACACCGGATATGTCAGCCATGCATCATGACTCGTCACATGACCTTAAAACTGTTGGAGCTAAGCTAAAGGATATCGTCGGGGTCCCAGATACTTCCCTGGAAGTAAGATACATTACCAGTCACATTTGTGACATAGTTGCAGAGCGTGCTGCACGCTTGGCTGCTGCTG ] [-] EMBL CB683495 [ TTAAAACTGTTGGAGCTAAGCTAAAGGATATCGTCGGGGTCCCAGATACTTCCCTGGAAGTAAGATACATTACCAGTCACATTTGTGACATAGTTGCAGAGCGTGCTGCACGCTTGGCTGCTGCTGGCATATATGGGGTCCTAAAGAAGCTAGGTCGGGACAAGATGCCAAAAGACGGCAGTAAGATGCCTAGGACTGTCATTGCCTTGGATGGTGGGCTCTATGAACATTACAAGAAGTTCAGCAGTTGCTTAGAATCAACTCTAACAGACCTTCTTGGGGATGATGTCTCGTCTTCGGTGGTTACCAAGCTGGCCAACGATGGTTCTGGCATTGGAGCTGCTCTTCTCGCAGCCTCGCACT CCCAGTATG C CGAGATCGACTAGCTTTAAGGATGATCTTGATGAATGATGAATCAAACTCCGTTTGTAGGTTCTCATTTCCCCCTTCAAAAT CCACATAATACTCCTGGCTCCCCCCTTGAAATCTTACCATCTTTTTTTGGCTATTCTGA GGG CAAACA TAAGTG CCTCTG CAGCGGGATATAGCTAGTATAGCGCCAATGAGTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACA GGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCCTTAATTGATGTTGAGAACCAAGATTTTTTTGCTCTGTATTTGGTCTTCGTAATAAAGAAGGGGACATAATCTAAaaaaaaaga ] [+] EMBL CB683357 [ TAAGCCTTAGGATATCGTCGGGGTCCCAGATACTTCCCTGGAAGTAAGATACATTACCAGTCACATTTGTGACATAGCTGCAGAGCGTGCTGCACGCTTGGCTGCTGCTGGCATATATGGGGTCCTAAAGAAGCTAGGTCGGGACAAGATGCCAAAAGACGGCAGTAAGATGCCTAGGACTGTCATTGCCTTGGATGGTGGGCTCTATGAACATTACAAGAAGTTCAGCAGTTGCTTAGAATCAACTCTAACAGACCTTCTTGGGGATGATGTCTCGTCTTCGGTGGTTACCAAGCTGGCCAACGATGGTTCTGGCATTGGAGCTGCTCTTCTCGCAGCCTCGCACT CCCAGTATG C CGAGATCGACTAGCTTTAAGGATGATCTTGATGAATGATGAATCAAACTCCGTTTGTAGGTTCTCATTTCCCCCTTCAAAAT CCACATAATACTCCTGGCTCCCCCCTTGAAATCTTACCATCTTTTTTTGGCTATTCTGA GGG CAAACA TAAGTG CCTCTG CAGCGGGATATAGCTAGTATAGCGCCAATGAGTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAACAGACTAACAGGGAAATGGAGGCACA GGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCC ] [+] EMBL C99523 [ AGCANTTGCTTAGAATCAACTCTAACAGACCTTCTTGGGGATGATGTCTCGTCTTCGGTGGTTNCCAAGCTGGCCAACGATGGTTCTGGCATTGGAGCTGCTCTTCTCGCAGCCTCGCACT CCCAGTATG C CGAGATCGACTAGCTTTAAGGATGATCTTGATGAATGATGAATCAAACTCCGTTTGTAGGTTCTCATTTCCCCCTTC AAAT CCACAT ATACTCCTGGCTCCCCCCTTGAAATCTTACC TCTTTTTTTGGCTATTCTGA GGG CAAACA TAAGTG CCTCTG CAGCGGGATATAGCTAGTATAGCGCCAATGAGTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACA GGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCCTTAATTGATGTTGAGAACCAAGATTTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAAGGGGACATAATCTAATTGCTCTTGTTTGATCTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99674 [ TTCTTGGGGATGATGTCCCGTCTTCGGTGGTTACCAAGCTGGCCAACGATGGTTCTGGCATTGGAGCTGCTCTTCTCGCAGCTTCGCACT CCCAGTATGCC CGAGATCGACTAGCTTTAAGGATGATCTTGATGAATGATGAATCAAACCCCGTTTGTAGGTTCTCATTTCCCCCTTC AAAT CCACATAATACTCCTGGCT CCCCCTTGAAATCTTACCATCTTTTTTTGGCTATTCTGA GGG CAAACA TAAGTG CCTCTG CAGCGGGATATAGCTAGTATAGCGCCAATGAGTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACA GGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCCTTAATTGATGTTGAGAACCAAGATTTTTTTGCTCTGTATTTTCTCTTCGTAANCCNNAAGGGGACATAATCTAATTGCTCTTGTTTGATCTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99710 [ CGCAGCCTCGNACTCCCCAGTATN CACAAGATCGACTAGCTTTAAGGATGATCTTGATG ATGATGAATCAAA TCCGTTTGTAGGTTCTCATTTCCCCCTTCAAAATCCCACATAATACTCCTGGCTCCCCCCTTGAAATCTTNCC TCTTTTTTTGGCTATTCTGA GGG CAAACA TAAGTG CCTCTG CAGCGGGATATAGCTAGTATAGCGCCAATGAGTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACA GGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCCTTAATTGATGTTGAGAACCAAGATTTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAAGGGGACATAATCTAATTGCTCTTGTTTGATCTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99573 [ TTGGCTATTCTGA GGG CAAACA TAAGTG CCTCTG CAGCGGGATATAGCTNGTATAGCGCCAATGAGTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACA GGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCCTTAATTGATGTTGAGAACCAAGATTTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAAGGGGACATAATCTAATTGCTCTTGTTTGATCTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BQ908878 [ TCTGACGGGCCACAACCACTAAGTGCCCTCTGCCAGCGGGATATAGCTAGTATAGCGCCCATGAGTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACACGGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCCTTAATTGAT TTGAGAACCAAGATTTTTTTGCTC GTATTTTCTCTTCGTAATAAAGAAGGGGACATAATCTAATTGCTC TGTTTGATCTCATAAAAAAAAAA ] consensusID : consensus_14812#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [CAGGATTCGGCACGAGCCCCTTCAAAATCCACATAATACTCCTGGCTCCCCCCTTGAAATCTTACCATCTTTTTTTGGCTATTCTGAGGGCAAACATAAGTGCCTCTGCAGCGGGATATAGCTAGTATAGCGCCAATGANTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGANGCACAGGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCCTTAATTGATGTTGANAACCAAGATTTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAANGG] [+] EMBL AA753037 [CAGGATTCGGCACGAGCCCCTTCAAAATCCACATAATACTCCTGGCTCCCCCCTTGAAATCTTACCATCTTTTTTTGGCTATTCTGAGGGCAAACATAAGTGCCTCTGCAGCGGGATATAGCTAGTATAGCGCCAATGANTTTGGAGGTTTTCTAATGGCATAAAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGANGCACAGGCAATTTCCATTCCTGTTCTGTCAGATTCTTTTCCCCCTTAATTGATGTTGANAACCAAGATTTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAANGG] consensusID : consensus_14812#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [TAATTGCTGAGGGNCACAACCACGTACAGGTGCCTGCTGCGCAAGCCGGGAATAATAGCTAGTATTACGACGCCCACATGAGTTTTGGAGGTTTATTCTAATGGCATAATAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACAGGCCAATTTCCATTCCTGTTCTGTCAGATTCTTNTTCCCCCTTAATTGATGTTGAGAACCCAGATTTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAAGGGGACATAATCTAATTGCTCTTGTTTGATCTCAAAAAAAAAA] [+] EMBL BQ907247 [TAATTGCTGAGGGNCACAACCACGTACAGGTGCCTGCTGCGCAAGCCGGGAATAATAGCTAGTATTACGACGCCCACATGAGTTTTGGAGGTTTATTCTAATGGCATAATAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACAGGCCAATTTCCATTCCTGTTCTGTCAGATTCTTNTTCCCCCTTAATTGATGTTGAGAACCCAGATTTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAAGGGGACATAATCTAATTGCTCTTGTTTGATCTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14812#0 TACGCGGCCGGAGAGAGGAGGGGGGAAGAGAGGATCTCGCAGAGCGCCATAGCCTCGGAT 60 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 CCAGAAGCGGAATTCGGTGGAGGTCTCGGGCACCTGGATCGATCGGAGGAAGGGAAGGCG 120 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 GAGCAGCGGTGATGGGGAAGGCGGCGGCGGTGGGGACGGCGGTGGTGGTGGCCGCGGCGG 180 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 TCGGGGTGGCGGTGGTGCTGGCGCGGAGGCGGAGGAGGAGGGACCTGGAGCTGGTGGAGG 240 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 GAGCCGCGGCGGAGAGGAAGAGGAAGGTGGCGGCGGTGATCGAGGACGTGGAGCACGCGC 300 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 TGTCGACCCCGACGGCGCTGCTGCGGGGCATCTCGGACGCCATGGTCACCGAGATGGAGC 360 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 GAGGCCTGCGCGGGGACAGCCACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACC 420 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 TCCCCACCGGAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCC 480 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 GCGTCCTGCGAGTCCAACTCGGTGGCAAGGAGAAACGTGTCGTCCAACAACAGTACGAGG 540 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 AAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATGGAACTGTTTGATTTTATTG 600 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 CTTCTGCATTGTCAAAATTTGTTGATACTGAAGGTGATGATTTCCACCTCCCAGAAGGGA 660 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 GACAGAGAGAGCTGGGCTTCACCTTTTCCTTCCCAGTGAGCCAGACATCAATATCGTCAG 720 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 GAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCGGTTGGCGAAGATGTTG 780 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 TATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGATTAGATATGAAAATTGCAGCATTGG 840 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 TTAATGACACTGTCGGCACATTGGCTGGTGGGAGGTATGCGGATAACAGTGTTGTTGCTG 900 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 CTATAATATTGGGCACTGGTACAAATGCAGCATATGTTGAGAATGCTAATGCAATTCCTA 960 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 AATGGACCGGTTTACTGCCTAGGTCCGGAAATATGGTAATCAACACAGAATGGGGGAGCT 1020 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 TTAAATCAGATAAGCTTCCTCTTTCAGAATTCGATAAAGCAATGGATTTTGAAAGCTTGA 1080 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 ATCCTGGAGAGCAGATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGC 1140 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 GAAGAATCTTGCTGAAGCTTGCTCATGATGCAGCTTTGTTTGGGGATGTTGTTCCATCTA 1200 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 AGCTAGAGCAACCGTTTGTACTAAGGACACCGGATATGTCAGCCATGCATCATGACTCGT 1260 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 CACATGACCTTAAAACTGTTGGAGCTAAGCTAAAGGATATCGTCGGGGTCCCAGATACTT 1320 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 CCCTGGAAGTAAGATACATTACCAGTCACATTTGTGACATAGTTGCAGAGCGTGCTGCAC 1380 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 GCTTGGCTGCTGCTGGCATATATGGGGTCCTAAAGAAGCTAGGTCGGGACAAGATGCCAA 1440 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 AAGACGGCAGTAAGATGCCTAGGACTGTCATTGCCTTGGATGGTGGGCTCTATGAACATT 1500 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 ACAAGAAGTTCAGCAGTTGCTTAGAATCAACTCTAACAGACCTTCTTGGGGATGATGTCT 1560 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 CGTCTTCGGTGGTTACCAAGCTGGCCAACGATGGTTCTGGCATTGGAGCTGCTCTTCTCG 1620 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 CAGCCTCGCACTCCCAGTATGCCGAGATCGACTAGCTTTAAGGATGATCTTGATGAATGA 1680 consensus_14812#1 ------------------------------------------------------------ consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 TGAATCAAACTCCGTTTGTAGGTTCTCATTTCCCCCTTCAAAATCCACATAATACTCCTG 1740 consensus_14812#1 ----------------CAGGATTCGGCACGAGCCCCTTCAAAATCCACATAATACTCCTG 44 consensus_14812#2 ------------------------------------------------------------ consensus_14812#0 GCTCCCCCCTTGAAATCTTACCATCTTTTTTTGGCTATT-CTGAGGGCAAACATAAG-TG 1798 consensus_14812#1 GCTCCCCCCTTGAAATCTTACCATCTTTTTTTGGCTATT-CTGAGGGCAAACATAAG-TG 102 consensus_14812#2 ---------------------TAATTGCTGAGGGNCACAACCACGTACAGGTGCCTGCTG 39 * * * ** * * * ** * ** consensus_14812#0 CCTCTGCAGCGGGATATAGCTAGTATAGCGCCA-----ATGAGTTT-GGAGGTTT--TCT 1850 consensus_14812#1 CCTCTGCAGCGGGATATAGCTAGTATAGCGCCA-----ATGANTTT-GGAGGTTT--TCT 154 consensus_14812#2 CGCAAGCCGGGAATAATAGCTAGTATTACGACGCCCACATGAGTTTTGGAGGTTTATTCT 99 * ** * * *********** ** * **** *** ******** *** consensus_14812#0 AATGGCATAA-AACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACAGGC-A 1908 consensus_14812#1 AATGGCATAA-AACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGANGCACAGGC-A 212 consensus_14812#2 AATGGCATAATAACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACAGGCCA 159 ********** ************************************** ******** * consensus_14812#0 ATTTCCATTCCTGTTCTGTCAGATTCTTTT-CCCCCTTAATTGATGTTGAGAACCAAGAT 1967 consensus_14812#1 ATTTCCATTCCTGTTCTGTCAGATTCTTTT-CCCCCTTAATTGATGTTGANAACCAAGAT 271 consensus_14812#2 ATTTCCATTCCTGTTCTGTCAGATTCTTNTTCCCCCTTAATTGATGTTGAGAACCCAGAT 219 **************************** * ******************* **** **** consensus_14812#0 TTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAAGGGGACATAATCTAATTGCTCTTGT 2027 consensus_14812#1 TTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAANGG---------------------- 309 consensus_14812#2 TTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGAAGGGGACATAATCTAATTGCTCTTGT 279 *********************************** ** consensus_14812#0 TTGATCTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2084 consensus_14812#1 --------------------------------------------------------- consensus_14812#2 TTGATCTCAAAAAAAAAA--------------------------------------- 297 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||