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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 951 fasta sequence
[GGGTCCGAACATTTTCTTGAAGGTCGATCCAGTAGTACCCATGNCCGGTGGTGAAGGCNCCGTCGGAGAACATTACATGCGGGTGATCCNCGCGACGACGGGTACGGCGACGACGCGGCCAGCACCAGGAGAAGCCGGGGGCGGCCGTGTCCGTTGCGAAGGGCGCCGCGGCGGCGGCGGCGGCGGGGTCGATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACAGCGCTGGCGCTGATCGTGGCGACGCCGCTGCTGGTGCTCTTCAGCCCCGTGCTGGTGCCGGCCGCCTTCGCGGCGTCGCTGCTGGCGGCCGGGCTCGCGTCCTCCGGCGCGCTCGGCGCCGCGGCGGTGGGCGTGCTGGCGTGGATGTACCGGTACCTGCAGTCGCCGTCCGGCGAGCACGCGCCCGCCGGCGCCGGCAAGGTGGAGCACGCCCGCGCGCTGCTCGACGCCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCAATCACACATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACAATAATTAGTTGCAAAATGCTGGATTGCTGGTACGGCGACATCTG-AAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTCTTCCCCTTCTTTAAGAAAGGGGGAATTTTTTTAAACCCGGGGGAAATTCCCCTTTTGGGGGGGGTAATTTTAAATTGGGGGAAAAAAGGGGAAAAAGTGTTCCCCGGGGAAAAATGGTTTCCCCCCAAAATTCCCAAAAAAAAAAAACCCGGAAAAATAAATGGGAAACCCGG]
[+] EMBL AU077540 [GGGTCCGAACATTTTCTTGAAGGTCGATCCAGTAGTACCCATGNCCGGTGGTGAAGGCNCCGTCGGAGAACATTACATGCGGGTGATCCNCGCGACGACGGGTACGGCGACGACGCGGCCAGCACCAGGAGAAGCCGGGGGCGGCCGTGTCCGTTGCGAAGGGCGCCGCGGCGGCGGCGGCGGCGGGGTCGATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACAGCGCTGGCGCTGATCGTGGCGACGCCGCTGCTGGTGCTCTTCAGCCCCGTGCTGGTGCCGGCCGCCTTCGCGGCGTCGCTGCTGGCGGCCGGGCTCGCGTCCTCCGGCGCGCTCGGCGCCGCGGCGGTGGGCGTGCTGGCGTGGATGTACCGGTACCTGCAGTCGCCGTCCGGCGAGCACGCGCCCGCCGGCGCCGGCAAGGTGGAGCACGCCCGCGCGCTGCTCGACGCCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCAATCACACATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACAATAATTAGTTGCAAAATGCTGGATTGCTGGTACGGCGACATCTG AAAAAAAAAAAAA ]
[+] EMBL AU163934 [ TTGCNAAGGGCGCCGCGGCGACGACGGCGGCGGGGTCGATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACAGCGCTGGCGCTGATCGTGGCGACGCCGCTGCTGGTGCTCTTCAGCCCCGTGCTGGTGCCGGCCGCCTTCGCGGCGTCGCTGCTGGCGGCCGGGCTCGCGTCCTCCGGCGCGCTCGGCGCCGCGGCGGTGGGCGTGCTGGCGTGGATGTACCGGTACCTGCAGTCGCCGTCCGGCGAGCACGCGCCCGCCGGCGCCGGCAAGGTGGAGCACGCCCGCGCGCTGCTCGACGCCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTANTTGATGCAATCACACATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTNCAATAATTAGTTGCAAAATGCTGGATTGCTGGTACGGCGACATNTGAAAAAAAAAAAAAAAAAAAACAAAAAAAAA ]
[+] EMBL AU183710 [ GCTGCTGGTGCTCTTCAGCCCCGTGCTGGTGCCGGCCGCCTTNNCGGCGTCGCTGCTGGCGGCCGGGCTNGCGTCCTCCGGCGCGCTCGGCNCCCCGGCGGTGGGCGTGCTGGCGTGGATGTACCGGTACCTGCAGTCGCCGTCCGGCGAGCACGCGCCCGCCGGCGCCGGCAAGGTGGAGCACGCCCGCGCGCTGCTNGACGCCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCAGGCGCGCACCTANAAAAATTAGCTACGGATTAGTTCAAANCAACTCGCCTATAGCTAGCTGATGCAATCACACATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACAATAATTAGTTGCAAAATGCTGGATTGCTGGTACGGCGAAA AAAAAAAAAAAAAA ]
[+] EMBL CF315394 [ CGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCAATCACACATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACAATAATTAGTTGCAAAATGCTGGATTGCTGGTACGGCGACATCTG AAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTCTTCCCCTTCTTTAAGAAAGGGGGAATTTTTTTAAACCCGGGGGAAATTCCCCTTTTGGGGGGGGTAATTTTAAATTGGGGGAAAAAAGGGGAAAAAGTGTTCCCCGGGGAAAAATGGTTTCCCCCCAAAATTCCCAAAAAAAAAAAACCCGGAAAAATAAATGGGAAACCCGG]
consensusID : consensus_14820#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 703 fasta sequence
[ATCACAACATTTTCTTGAGGTCGAT-CAGTAGTACCCATGGCCGGTGGTGGAGGCGCCGTCGGAGAACACTACATGCGGGTGATCCGCGGCGACGACGGGTACGGCGACGACGGCGGCCAGCACCAGGAGAAGCCGGGGGCGGCCGTGT-CCGTTGCGAAGGGCGCCGCGGCGGCGGCGGCGGCGGGGTC-GATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACAGCGCTGGCGCTGA-TCGTGGCGACGCCGCTGC-TGGTGCTC-TTCAGCCCCGTGC-TGGTG-CCGGCCGCCTTCG-CGGCG-TCGCTGC-TGGCGGCCGGGCTCGCGTC-CTCCGGC-GCGCTCGGCGCCGCGGCGGTGGGCGTGCTGGC-GTGGATGTACC-GGTACCTGCAGTCGCC-GTCCGGCGAGCACGC-GC-CCGC-CGGC-GCC-GGCAAGGTGGAGCAC-GCCC-GCGCGCTGCTCGACG-CCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCA-GGCGCGCA-CCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCA-ATCACA-CATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACAATAATTAGTTG-C-AAATGCTGGATTGCTGGTACGGCGACATCTGAAATTTTATACGACGTCGTGGTCTTAAATTTT------AAAAAAAAAA]
[+] EMBL AK107774 [ATCACAACATTTTCTTGAGGTCGAT CAGTAGTACCCATGGCCGGTGGTGGAGGCGCCGTCGGAGAACACTACATGCGGGTGATCCGCGGCGACGACGGGTACGGCGACGACGGCGGCCAGCACCAGGAGAAGCCGGGGGCGGCCGTGT CCGTTGCGAAGGGCGCCGCGGCGGCGGCGGCGGCGGGGTC GATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACAGCGCTGGCGCTGA TCGTGGCGACGCCGCTGC TGGTGCTC TTCAGCCCCGTGC TGGTG CCGGCCGCCTTCG CGGCG TCGCTGC TGGCGGCCGGGCTCGCGTC CTCCGGC GCGCTCGGCGCCGCGGCGGTGGGCGTGCTGGC GTGGATGTACC GGTACCTGCAGTCGCC GTCCGGCGAGCACGC GC CCGC CGGC GCC GGCAAGGTGGAGCAC GCCC GCGCGCTGCTCGACG CCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCA GGCACGCA CCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCA ATCTCA CATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACAATAATTAGTTG CAAAATGCTGGATTGCTGGTACG ]
[+] EMBL AK119722 [ATCACAACATTTTCTTGAGGTCGAT CAGTAGTACCCATGGCCGGTGGTGGAGGCGCCGTCGGAGAACACTACATGCGGGTGATCCGCGGCGACGACGGGTACGGCGACGACGGCGGCCAGCACCAGGAGAAGCCGGGGGCGGCCGTGT CCGTTGCGAAGGGCGCCGCGGCGGCGGCGGCGGCGGGGTC GATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACAGCGCTGGCGCTGA TCGTGGCGACGCCGCTGC TGGTGCTC TTCAGCCCCGTGC TGGTG CCGGCCGCCTTCG CGGCG TCGCTGC TGGCGGCCGGGCTCGCGTC CTCCGGC GCGCTCGGCGCCGCGGCGGTGGGCGTGCTGGC GTGGATGTACC GGTACCTGCAGTCGCC GTCCGGCGAGCACGC GC CCGC CGGC GCC GGCAAGGTGGAGCAC GCCC GCGCGCTGCTCGACG CCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCA GGCGCGCA CCTAGAAAAATTAGCTACGGATCAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCA ATCACA CATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACAATAATTAGTTG CAAAATGCTGGATTGCTG ]
[+] EMBL AU163804 [ TTTTCTTGAGGTCGAT CAGTAGTACCCATGGCCGGTGGTGGAGGCGCCGTCGGAGAACACTACATGCGGGTGATCCGCGGCGACGACGGGTACGGCGACGACGGCGGCCAGCACCAGGAGAAGCCGGGGGCGGCCGTGT CCGTNGCGAAGGGCGCNGCGGCGGC GCGGCGGCGGGGTC GATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACAGCGCTGGCGCTAN TCGTNGCGACG CGCTGC TGGTGCTC TTCAG CCCGTTC TGGTN CCGGCCG CTTCG CGG G TCGNTGC TGGC GCCGG ]
[+] EMBL OSC872 [ TTTNTTGAGGTCGAT CAGTAGTACCCATGGCCGGTGGTGGAGGCGCCGTCGGAGAACACTACATGCGGGTNATCCGCGGCGACGACGGGTACGGCGACGACGGNGGCCAGCACCAGGAGAAGCCGGGGGCGGCCGTTT CCGTTGCNAAGGGCGCCGCGGCGGCGGGGNCGGCGGGGTC NATGCTGGCGC ]
[+] EMBL OSC098 [ TTCTTGAGGTCGAT CAGTAGTACCCATGGCCGGTGGTGGAGGCGCCGTCGGAGAACACTACATGCGGGTGATCCGCGGCGACGACGGGTACGGCGACGACGGCGGCCAGCACCAGGAGAAGCCGGGGGCGGCCGTGT CCGTTGCGAAGGGCGCCGCGGCGGCGGGGTCGGCGGGGTC GATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACANCGCTGGCGTTGA TCGTGGCGACGCCGCTGCTTGGTGCTCTTTCAACCCCGTGCTTGGTGCCCGGCCGCTTTCG CGGCGTTCGNTTCTTNGCGGCCGGGTTNGCGTC CTt ]
[+] EMBL AU077539 [ TTGAGGTCGAT CAGTAGTACCCATGGCCGGTGGTGGAGGCGCCGTCGGAGAACACTACATGCGGGTGATCCGCGGCGACGACGGGTACGGCGACGACGGCGGCCAGCACCAGGAGAAGCCGGGGGCGGCCGTGT CCGTTGCGAAGGGCGCCGCGGCGGCGGCGGCGGCGGGGTC GATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACAGCGCTGGCGCTGA TCGTGGCGACGCCGCTGC TGGTGCTC TTCAGCCCCGTGC TGGTG CCGGCCG CTTCG CGGCG TCGCTGC TGGCGGCCGGGCTCGCGTC CTCCGGC GCGCTCGGCGCCGCGGCGGTGGGCGTGCT GC GTGGATGTACC GGTACCTGCAGTCGCC GTCCGGCGAGCACGC GC CC ]
[+] EMBL CF307041 [ GGTCGAT CAGTAGTACCCATGGCCGGTGGTGGAGGCGCCGTCGGAGAACACTACATGCGGGTGATCCGCGGCGACGACGGGTACGGCGACGACGGCGGCCAGCACCAGGAGAAGCCGGGGGCGGCCGTGT CCGTTGCGAAGGGCGCCGCGGCGGCGGCGGCGGCGGGGTC GATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACAGCGCTGGCGCTGA TCGTGGCGACGCCGCTGC TGGTGCTC TTCAGCCCCGTGC TGGTG CCGGCCGCCTTCG CGGCG TCGCTGC TGGCGGCCGGGCTCGCGTC CTCCGGC GCGCTCGGCGCCGCGGCGGTGGGCGTGCTGGC GTGGATGTACC GGTACCTGCAGTCGCC GTCCGGCGAGCACGC GC CC ]
[+] EMBL AU101342 [ CGATCCAGTAGTACCCATGCCCGGTGTTGAAGGCCCCGTCGAAGACCATTACATGCGGGTGATCCNCGGCGACGACGGGTACGGCGACGACGNCGGCCAGCACCAGNAGAAGCCGGGGCCGNCCGTGT CCGTTGCGAAGGGCNCCGCGCCGCCGCCGGCGGC GGGTC GATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACAGCGCTGGCGCTGA TCGTGGCGACGCCGCTGC TGGTGCTC TTCAGCCCCGTGC TGGTG CCGGCCG CTTCG CGGCG TCGCTGC TGGCGGCCGGGCTCGCGTC CTCCGGC GCGCTCGGCGCCGCGGCGGTGGGCGTGCTGGC GTGGATGTACC GGTACCTGCAGTCGCC GTCCGGCGAGCACGC GC CCGC CGGC GCC GGCAAGGTGGAGCAC GCCC GCGCGCTGCTCGACG CCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCA GGCGCGCA CCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCA ATCACA CATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACAATAATTAGTTG CAAAATGCTGGATTGCTGGTACGGCGACATCTGAAATTTTATACGACGTCGTGGTCTTAAATTTT AAAAAAAAA ]
[+] EMBL BI797990 [ GAACCCGGGGCCGCCCGTGTCCCGTTGCGAAGGGC CCGC GC GC GC GC GCGGGGTC GATGCTGGCGCTGGCGGGGCTGACGGCGACGGGGACAGCGCTGGCGCTGA TCGTGGCGACGCCGCTGC TGGTGCTC TTCAGCCCCGTGC TGGTG CCGGCCGCCTTCG CGGCG TCGCTGC TGGCGGCCGGGCTCGCGTC CTCCGGC GCGCTCGGCGCCGCGGCGGTGGGCGTGCTGGC GTGGATGTACC GGTACCTGCAGTCGCC GTCCGGCGAGCACGC GC CCGC CGGC GCC GGCAAGGTGGAGCAC GCCC GCGCGCTGCTCGACG CCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCA GGCGCGCA CCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCA ATCACA CATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACAATAATTAGTTG C AAATGCTGGATTGCTGGTACGGCGACATCTGAAATTTTATACGACGTCGTGGTCTTTAAaaaaa ]
[+] EMBL BI798901 [ tc CCGTTGCGAAGGGCCCCGC GCGCCGTC GCGCCGGGTTCAGAT CTGGC CT GCGGGCCTGACGGCGACGGGGACAGCGCTGGCGCTGATTCGTGGCGACCCCCCTGC TGGTGCTC TTCAGCCCCGTGC TGGTG CCGGCCCCCTTCG CGGCG TCGCTGC TGGCGGCCGGGCTCGCGTC CTCCGGC GCGCTCGGCGCCGCGGCGGTGGGCGTGCTGGC GTGGATGTACC GGTACCTGTAGTCGCC GTCCGGCGAGCACGC GC CCGC CGGC GCC GGCAAGGTGGAGCAC GCCC GCGCGCTGCTCGACGCCCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCACGGCGCGCACCCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCACATCACACCATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACCATAATTAGTTGCC AAATGCTGGATTGCTGGTACGGCGACATCTGAAATTTTATACGACGTCGTGGTCTTAAATTTTGTCCGCAAAAAAAAAA]
[+] EMBL BI795721 [ acaAGCGCT GCGCTGA TCGTGGCGACTCCGCTGC TGGTGCTC TTCAGCCCCGTGC TGGT CCCGCCGCCTTCGTCGGCG TCGCTGC TGTCGCCCGGGCTCGCGTC CTCCGGC GCGCTCGGC CCGC GCGGTGGGC TTCTGGC GTGGATGTACC GGTACCTGCA TC CC GTCCGGCGAGCACGC GC CCGC CGGC GCC GGCAAGGTGGAGCAC GCCC GCGCGCTGCTCGACG CCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCA GGCGCGCA CCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCA ATCACA CATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTAC ATAATTAGTTG C AAATGCTGGATTGCTGGTACGGCGACAaaaa ]
[+] EMBL BI795134 [ GCT C TGGC GCC GGCTCGCGTCACTCCGGCTGCGCTCGGCGCCGC GCGGTGGGCGTGCTGGCAGTGGATGTACCAGGTACCTGCAGTCACCAGTCCGGCGAGCACGCAGCACCGCACGGCAGCCAGGCAAGGTGGAGCACAGCCCAGCGCGCTGCTCGACG CCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCA GGCGCGCA CCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCA ATCACA CATATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACAATAATTAGTTG C AAATGCTGGATTGCTGGTACGGCGACATCTGAAATTTTAaaaa ]
consensusID : consensus_14820#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence
[CCGGGGCCGCCGTGTCCTTCGAAGGCCCCGCGCGCGCGCGGGTCGATCTGGCCTGTCGGGCCTGTACGGCGACGGGGACAGCGCTGGCCCTGATCGTGGCGACGCCCCTGCTGGTGCTCTTCAGCCCCGTGCTGGTGCCGCCGCCTTCAGCGGCGTCGCTGCTGCAGGCCGGGCTCAGCAGTCCTCCAGGCGCAGCTCAGGCAGCCAGCAGGCGGTGGGCGTGCTGGCGTGGATGTACCCGGTACCTGCAGTCCCCAGTCCAGGCGAGCACGCGCACCAGCCAGGCAGCCGGCAAGGTGGAGCACGCCCGCGCGCTGCTCGACGCCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCCATCACACATATGCATATCCCTTCGTGTTTGTGTAATGTTCCGTGTCGTGTACAAATAATTAGTTGCACAAATGCTGGATTCTGGTACGGCGACATCTGAAATTTTATACGAAAAAAAAAA]
[+] EMBL BI797029 [CCGGGGCCGCCGTGTCCTTCGAAGGCCCCGCGCGCGCGCGGGTCGATCTGGCCTGTCGGGCCTGTACGGCGACGGGGACAGCGCTGGCCCTGATCGTGGCGACGCCCCTGCTGGTGCTCTTCAGCCCCGTGCTGGTGCCGCCGCCTTCAGCGGCGTCGCTGCTGCAGGCCGGGCTCAGCAGTCCTCCAGGCGCAGCTCAGGCAGCCAGCAGGCGGTGGGCGTGCTGGCGTGGATGTACCCGGTACCTGCAGTCCCCAGTCCAGGCGAGCACGCGCACCAGCCAGGCAGCCGGCAAGGTGGAGCACGCCCGCGCGCTGCTCGACGCCAAGGCGCACGACGTTGGGGACTGGGTCCAGCACCGCCTCGACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCCATCACACATATGCATATCCCTTCGTGTTTGTGTAATGTTCCGTGTCGTGTACAAATAATTAGTTGCACAAATGCTGGATTCTGGTACGGCGACATCTGAAATTTTATACGAAAAAAAAAA]
consensusID : consensus_14820#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence
[CGACGTGGGACAGGCTGCTGGCTGCTGAGTCTGTGTCTGACTCCGCTGCTGGTGCTCTTGTCAGCCCCAGTGCTGGTTCCTGGCCATGCCTTTCTGCTGGCTGTCGGCTTGCTGGCGGCCGGGCTCGCGGTGCCTCCTGGCAGCTGCTCGGCACGCCACGCAGTGCGGTGGGCTGTGGCTTGGCGTGGATGTACCGGTACCTGTAGTCGCCGTCCGGCGAGCACGCGCCCGCCGGCGCCGGCATAGGTGGAGCACGCCCGCGCGCTGCTCGACGCCAAGGCGCCCTGACGTTGGGGACTGGGTCCAGCACCCGCCTCGACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTCGATGCAATCACACATATGCATATGCCTTCGTGTTTGTGTAATGTTCCCGTGGTGTGTACCATAATTATTTGCCAAATGCTGGATTGCTGGTACGGCGACATCTGAAATTTTATACGACGTCGTGGTCTTAAATTTTGTCCGAAAAAAAAAA]
[+] EMBL BI798406 [CGACGTGGGACAGGCTGCTGGCTGCTGAGTCTGTGTCTGACTCCGCTGCTGGTGCTCTTGTCAGCCCCAGTGCTGGTTCCTGGCCATGCCTTTCTGCTGGCTGTCGGCTTGCTGGCGGCCGGGCTCGCGGTGCCTCCTGGCAGCTGCTCGGCACGCCACGCAGTGCGGTGGGCTGTGGCTTGGCGTGGATGTACCGGTACCTGTAGTCGCCGTCCGGCGAGCACGCGCCCGCCGGCGCCGGCATAGGTGGAGCACGCCCGCGCGCTGCTCGACGCCAAGGCGCCCTGACGTTGGGGACTGGGTCCAGCACCCGCCTCGACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTCGATGCAATCACACATATGCATATGCCTTCGTGTTTGTGTAATGTTCCCGTGGTGTGTACCATAATTATTTGCCAAATGCTGGATTGCTGGTACGGCGACATCTGAAATTTTATACGACGTCGTGGTCTTAAATTTTGTCCGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14820#0 GGGTCCGAACATTTTCTTGAAGGTCGATCCAGTAGTACCCATGNCCGGTGGTGAAGGCNC 60
consensus_14820#2 ------------------------------------------------------------
consensus_14820#1 --ATCACAACATTTTCTTGA-GGTCGATC-AGTAGTACCCATGGCCGGTGGTGGAGGCGC 56
consensus_14820#3 ------------------------------------------------------------
consensus_14820#0 CGTCGGAGAACATTACATGCGGGTGATCCNCG-CGACGACGGGTACGGCGACGACG-CGG 118
consensus_14820#2 ------------------------------------------------------------
consensus_14820#1 CGTCGGAGAACACTACATGCGGGTGATCCGCGGCGACGACGGGTACGGCGACGACGGCGG 116
consensus_14820#3 ------------------------------------------------------------
consensus_14820#0 CCAGCACCAGGAGAAGCCGGGGGCGGCCGTGTCCGTTGCGAAGGGCGCCGCGGCGGCGGC 178
consensus_14820#2 -----------------CCGGGGCCGCCGTGTCCTTCG---AAGGCCCCGCGCGCGCGC- 39
consensus_14820#1 CCAGCACCAGGAGAAGCCGGGGGCGGCCGTGTCCGTTGCGAAGGGCGCCGCGGCGGCGGC 176
consensus_14820#3 ------------------------------------------------------------
consensus_14820#0 GGCGGCGGGGTCGATGCTGGCGCTGGCGGGGCTG-ACGGCGACGGGGACAGCGCTGGC-G 236
consensus_14820#2 -------GGGTCGAT-CTGGC-CTGTCGGGCCTGTACGGCGACGGGGACAGCGCTGGC-C 89
consensus_14820#1 GGCGGCGGGGTCGATGCTGGCGCTGGCGGGGCTG-ACGGCGACGGGGACAGCGCTGGC-G 234
consensus_14820#3 ------------------------------------CGACGTGGGACAGGCTGCTGGCTG 24
** ** ** * ******
consensus_14820#0 CTGA--TCGTGGC-GACGCCGCTGCTGGTGCTCTT--CAGCCCC-GTGCTGGTGCC-GGC 289
consensus_14820#2 CTGA--TCGTGGC-GACGCCCCTGCTGGTGCTCTT--CAGCCCC-GTGCTGGTGCC-G-C 141
consensus_14820#1 CTGA--TCGTGGC-GACGCCGCTGCTGGTGCTCTT--CAGCCCC-GTGCTGGTGCC-GGC 287
consensus_14820#3 CTGAGTCTGTGTCTGACTCCGCTGCTGGTGCTCTTGTCAGCCCCAGTGCTGGTTCCTGGC 84
**** *** * *** ** ************** ******* ******** ** * *
consensus_14820#0 CG---CCTTC-GCGG--CGTCG--CTGCTGGCGGCCGGGCTCGC--GTCCTCC-GGCG-- 336
consensus_14820#2 CG---CCTTCAGCGG--CGTCG--CTGCTGCAGGCCGGGCTCAGCAGTCCTCCAGGCG-- 192
consensus_14820#1 CG---CCTTC-GCGG--CGTCG--CTGCTGGCGGCCGGGCTCGC--GTCCTCC-GGCG-- 334
consensus_14820#3 CATGCCTTTCTGCTGGCTGTCGGCTTGCTGGCGGCCGGGCTCGCGGTGCCTCCTGGCAGC 144
* * *** ** * **** ***** ********** ***** ***
consensus_14820#0 CGCTCGGCGCCGC-----G-GCGGTGGGC-GTG--CTGGCGTGGATGTACC-GGTACCTG 386
consensus_14820#2 CAGCTCAGGCAGCCAGCAG-GCGGTGGGC-GTG--CTGGCGTGGATGTACCCGGTACCTG 248
consensus_14820#1 CGCTCGGCGCCGC-----G-GCGGTGGGC-GTG--CTGGCGTGGATGTACC-GGTACCTG 384
consensus_14820#3 TGCTCGGCACGCCACGCAGTGCGGTGGGCTGTGGCTTGGCGTGGATGTACC-GGTACCTG 203
* * * ********* *** *************** ********
consensus_14820#0 CAGTCGCC-GTCC-GGCGAGCACGCGCCC--GCCGGC--GCCGGCA-AGGTGGAGCACGC 439
consensus_14820#2 CAGTCCCCAGTCCAGGCGAGCACGCGCACCAGCCAGGCAGCCGGCA-AGGTGGAGCACGC 307
consensus_14820#1 CAGTCGCC-GTCC-GGCGAGCACGCGCCC--GCCGGC--GCCGGCA-AGGTGGAGCACGC 437
consensus_14820#3 TAGTCGCC-GTCC-GGCGAGCACGCGCCC--GCCGGC--GCCGGCATAGGTGGAGCACGC 257
**** ** **** ************* * *** * ******* *************
consensus_14820#0 CCGCGCGCTGCTCGACGCCAAGGCGCAC-GACGTTGGGGACTGGGTCCAGCACC-GCCTC 497
consensus_14820#2 CCGCGCGCTGCTCGACGCCAAGGCGCAC-GACGTTGGGGACTGGGTCCAGCACC-GCCTC 365
consensus_14820#1 CCGCGCGCTGCTCGACGCCAAGGCGCAC-GACGTTGGGGACTGGGTCCAGCACC-GCCTC 495
consensus_14820#3 CCGCGCGCTGCTCGACGCCAAGGCGCCCTGACGTTGGGGACTGGGTCCAGCACCCGCCTC 317
************************** * ************************* *****
consensus_14820#0 GACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGC 557
consensus_14820#2 GACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGC 425
consensus_14820#1 GACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGC 555
consensus_14820#3 GACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGC 377
************************************************************
consensus_14820#0 TAGCT-GATGCAATCACACATATGCATATGCCTTCGTGTTTGTGTAATGTTCC-GTGT-G 614
consensus_14820#2 TAGCT-GATGCCATCACACATATGCATATCCCTTCGTGTTTGTGTAATGTTCC-GTGTCG 483
consensus_14820#1 TAGCT-GATGCAATCACACATATGCATATGCCTTCGTGTTTGTGTAATGTTCC-GTGT-G 612
consensus_14820#3 TAGCTCGATGCAATCACACATATGCATATGCCTTCGTGTTTGTGTAATGTTCCCGTGGTG 437
***** ***** ***************** *********************** *** *
consensus_14820#0 TGTACAA-TAATTAGTTGCA-AAATGCTGGATTGCTGGTACGGCGACATCTGAAAAAAAA 672
consensus_14820#2 TGTACAAATAATTAGTTGCACAAATGCTGGATT-CTGGTACGGCGACATCTGAAATTTTA 542
consensus_14820#1 TGTACAA-TAATTAGTTGCA--AATGCTGGATTGCTGGTACGGCGACATCTGAAATTTTA 669
consensus_14820#3 TGTACCA-TAATTATTTGCC-AAATGCTGGATTGCTGGTACGGCGACATCTGAAATTTTA 495
***** * ****** **** *********** ********************* *
consensus_14820#0 AAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 732
consensus_14820#2 TACGAAAAAAAAAA---------------------------------------------- 556
consensus_14820#1 TACGACGTCGTGGTCTTAAATTTTAAAAAAAAAA-------------------------- 703
consensus_14820#3 TACGACGTCGTGGTCTTAAATTTTGTCCGAAAAAAAAAA--------------------- 534
* *
consensus_14820#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTCTTCCCCTTCTTTAA 792
consensus_14820#2 ------------------------------------------------------------
consensus_14820#1 ------------------------------------------------------------
consensus_14820#3 ------------------------------------------------------------
consensus_14820#0 GAAAGGGGGAATTTTTTTAAACCCGGGGGAAATTCCCCTTTTGGGGGGGGTAATTTTAAA 852
consensus_14820#2 ------------------------------------------------------------
consensus_14820#1 ------------------------------------------------------------
consensus_14820#3 ------------------------------------------------------------
consensus_14820#0 TTGGGGGAAAAAAGGGGAAAAAGTGTTCCCCGGGGAAAAATGGTTTCCCCCCAAAATTCC 912
consensus_14820#2 ------------------------------------------------------------
consensus_14820#1 ------------------------------------------------------------
consensus_14820#3 ------------------------------------------------------------
consensus_14820#0 CAAAAAAAAAAAACCCGGAAAAATAAATGGGAAACCCGG 951
consensus_14820#2 ---------------------------------------
consensus_14820#1 ---------------------------------------
consensus_14820#3 ---------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||