|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1414 fasta sequence
[TTCCGATGAGGAATTAGTTAGCTCTCGAACAGTAGTACGAGATTTGTGCAAGTTGTGGTCCTGTCGTCATCCTGTGGAGTTGTGGTGAGTGTTTGACGAATTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCG-AGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCT-ACCT-GGAGCAGGAGCT-GGACCGGC-GGTGCCGCCTC-TTCCGCCTCTGGGAG-TCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGGCGTCGACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG-CG-CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA-TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA-TG-TCGCCGGCAAGCCGCTGCTGACG-CA-GGTGGTGTGAGCTAATTGA-GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA-GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA-CGGTCGGTCTGGGACGAT-CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTGTGTTGGGTTG-AAACGG---AAAAAAAAAAANAAAAAA]
[+] EMBL AK069655 [TTCCGATGAGGAATTAGTTAGCTCTCGAACAGTAGTACGAGATTTGTGCAAGTTGTGGTCCTGTCGTCATCCTGTGGAGTTGTGGTGAGTGTTTGACGAATTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGAACCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCG AGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCT ACCT GGAGCAGGAGCT GGACCGGC GGTGCCGCCTC TTCCGCCTCTGGGAG TCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGGCGTCGACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACG CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAG ]
[+] EMBL OSC104031 [ AGGAATTAGTTAGCTCTCGAACAGTAGTACGAGATTTGTGCAAGTTGTGGTCCTGTCGTCATCCTGTGGAGTTGTGGTGAGTGTTTGACGAATTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGNCGCCTGCNACGGCG AGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCAGATGAACGNCT ACCTGGGAGCAGGAGCTGGGACCGGCGGGTGCCGCCTCTTTCCG CTCTNGGAGTTCCCCAGCCGACCGCCGCGACGAC ]
[+] EMBL C74490 [ AGTAGTACGAGATTTGTGCAAGTAGTGGTCCTGTCGTCATCCTGTGGAGTNGTGGTGAGTGTATGACGAATTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAANCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGANGGCGAAGGCGGCGAGCGATGGATT CCTGGGCGTNCTGCTGGTGGCGCCATTAAACGCCTAACTT GGAGCAGGAGCT GGACCGGN GGTGCCGC ]
[+] EMBL AK059778 [ TTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCG AGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCT ACCT GGAGCAGGAGCT GGACCGGC GGTGCCGCCTC TTCCGCCTCTGGGAG TCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGGCGTCGACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACG CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTG ]
[+] EMBL CB654791 [ gCGGACACTGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCG AGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCT ACCT GGAGCAGGAGCT GGACCGGC GGTGCCGCCTC TTCCGCCTCTGGGAG TCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGGCGTCGACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGC ]
[+] EMBL CB661286 [ CTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCCCCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTCTAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCC TG TCGCCGGCA ]
[-] EMBL CB654792 [ GTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTTGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACG CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTTTGGGACGAT CCAGTAATAACGATTTAATATT ]
[-] EMBL CB661285 [ CACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACG CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATT ]
[+] EMBL BQ907276 [ CCCGGCTACACCTACTACCCGTCGGT GTGGA CT GCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CGCCTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTTGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCATTGTTCGCCGGCAAGCCGCTGCTGACN CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCCAAGCA GGTGCAATTCGACCAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACACCGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTGTGTTGGGTTGTAAACGG AAAAAAAAAA ]
[+] EMBL BI799473 [ cgtGTGGA CT GC GCGAGCAGCGACGTGCTGGT GTGGCGTGCCCCCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTTGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACG CA GGTGGTGTGAGCTAATTGACGTGACTGGATGATTCTGATTTGATTGATTCCCAAGCA GGTGC ATTCGACCAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACC CGGTCGGTCTGGGACGATCCCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAaaaaaa ]
[+] EMBL BM421965 [ TGGAGGCCC CTGGGCCCCAGGGGCGTGCTGATCAACATC GCC GGGGCCGCACGTCGACGAGGCGGCGATGGT GCGGCGCTGGCCGACGGCCGGCTTGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCACTGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACGCCACGGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCCAAGCACGGTGCAATTCGACCAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACC CGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTGTGTTGGGTTG AAACGGCCCACCAAAAAAAANAAAAA ]
[+] EMBL C96635 [ GGCAGCGCGACNCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCNCA TG TCGCCGGCAAGCCGTTG TGACG CN GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCN GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTCTGGGACGAT CCNGTNATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTNTGTTGGNTTG AAAAAA AAAAAAAAAAAAAAAAAA]
[+] EMBL AU092326 [ CGACGCACGAGACGCGCACGGCCA TGNCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTG TGACG CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTGTGTTGGGTTG AAACGG AAAAAAAA ]
consensusID : consensus_14833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 928 fasta sequence
[TGAGTGTTTGACGAATTTTTTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCGAGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCTACCTGGAGCAGGAGCTGGACCGGCGGTGCCGCCTCTTCCGCCTCTGGGAGTCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGG-GT-C-GACGNCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGTAAAAGAGTTGGTATTCTGGGGCTTGGCAGGATAGGCTTAGCCGTAGCAAAAAGAGCTGAGGCATTTGATTGCCCAATCAGCTATCATTCAAGATCAGAGAAACCATTTCCAAAGTACAAATTTTATCCAAATGTTGTTGACCTGGCAGCCAACTGTGATGTGCTAGTCGTAGCATGCTCACTTAATCCAGAGACCCGTCACATTGTAAACCGTAAGGTCATTGATGCACTAGGACCAGAGGGAGTGCTCATAAACATTGCTCGTGGAGCACATGTGGATGAACCTGAGCTTATATCCGCGCTTCTTGAGAAACGCTTGGG]
[+] EMBL AK101390 [TGAGTGTTTGACGAATTTTTTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCGAGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCTACCTGGAGCAGGAGCTGGACCGGCGGTGCCGCCTCTTCCGCCTCTGGGAGTCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGGCGT C GACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGTAAAAGAGTTGGTATTCTGGGGCTTGGCAGGATAGGCTTAGCCGTAGCAAAAAGAGCTGAGGCATTTGATTGCCCAATCAGCTATCATTCAAGATCAGAGAAACCATTTCCAAAGTACAAATTTTATCCAAATGTTGTTGACCTGGCAGCCAACTGTGATGTGCTAGTCGTAGCATGCTCACTTAATCCAGAGACCCGTCACATTGTAAACCGTAAGGTCATTGATGCACTAGGACCAGAGGGAGTGCTCATAAACATTGCTCGTGGAGCACATGTGGATGAACCTGAGCTTATATCCGCGCTTCTTGAGAAACGCTTGGG]
[+] EMBL OSC101842 [ ACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATNGCCGCCTGCAACGGCGAGGCGGCGAGCNATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATNAACGCCTACCTGGAGCAGGAGCTGGACCGGCGGTGCCGCCTCTTCCGCCTCTGGNAGTCCCCCGCCGACCGCCGCNACGACTACCTCCGCGCCCACGCCTCCTCCATCCGNGCCGTCGTCCCCTACGCCCTCCAGGG GTNC GACGNCGCCATGATCNAAGGCCTCCCCTCCCTCGANATCG ]
[+] EMBL C26522 [ ACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCGAGGCGG GAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCTACCTGGAGCAGGAGCTGGACCGGCGGTGNC CCTCTTCCGCCTCTNGGAGTCCCCCGTCGACCGTCGCGACGACTACCTCCGCGGCCACGTCTCCTCCATCCGCGTCGTCGTCCCCTACGNCCTCCAGGG TT CTGACGGCGCCATGATCGACGTCCTCCTCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGNGT ]
consensusID : consensus_14833#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence
[CTGAATCAACATCGCCCGGGCCACCACTTCGACGAGCGCCATGGTGCGGCCTGCCGACGCCGGCTTGCGGCCCGGGCTGGACCTGTTCGAGGACGACCGAACGTGCCCGAGGCCCTGTCTCGGGATGGACAAACGTCGTGCTGGTCCCCATGTGGGCCGCGCGACGCACCGAGACGCGCCCGGCCCTGGCCGACCTGGTGCTCGGCCACCTGGAGGCGCATGTCGCCGGCAAACCGCCTGCTGACCCCGGTGGTGTGAGCTAATTGAGTGACTGGATGATTCTGATTTGATTGATTCCCAAGCCGGTGCCATTCGACCAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCCTTTTGTAAACCCGGTCGGTCTGGGACGATCCCAGTAATAACGATTTAATATTTGTCCTTGGAAATGTGAAAAGTGTTTTGGGTTGAAAAAAAAAA]
[+] EMBL BI809957 [CTGAATCAACATCGCCCGGGCCACCACTTCGACGAGCGCCATGGTGCGGCCTGCCGACGCCGGCTTGCGGCCCGGGCTGGACCTGTTCGAGGACGACCGAACGTGCCCGAGGCCCTGTCTCGGGATGGACAAACGTCGTGCTGGTCCCCATGTGGGCCGCGCGACGCACCGAGACGCGCCCGGCCCTGGCCGACCTGGTGCTCGGCCACCTGGAGGCGCATGTCGCCGGCAAACCGCCTGCTGACCCCGGTGGTGTGAGCTAATTGAGTGACTGGATGATTCTGATTTGATTGATTCCCAAGCCGGTGCCATTCGACCAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCCTTTTGTAAACCCGGTCGGTCTGGGACGATCCCAGTAATAACGATTTAATATTTGTCCTTGGAAATGTGAAAAGTGTTTTGGGTTGAAAAAAAAAA]
consensusID : consensus_14833#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence
[CACGGCCATGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCATGTCGCCGGCAAGCCNNTNTGANGCAGGTGGTGTGNGCTAATTGAGTGACTGGATGATTNTGATTTGATTGATTCCAAAGCAGGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAANAATCTGTTTTCCCTTTTTGTAAACACGGTCGGTCTGGGACGATCCAGTAATAACGATTTAATATTTGTCATTGGAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094802 [CACGGCCATGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCATGTCGCCGGCAAGCCNNTNTGANGCAGGTGGTGTGNGCTAATTGAGTGACTGGATGATTNTGATTTGATTGATTCCAAAGCAGGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAANAATCTGTTTTCCCTTTTTGTAAACACGGTCGGTCTGGGACGATCCAGTAATAACGATTTAATATTTGTCATTGGAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 TTCCGATGAGGAATTAGTTAGCTCTCGAACAGTAGTACGAGATTTGTGCAAGTTGTGGTC 60
consensus_14833#1 ------------------------------------------------------------
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 CTGTCGTCATCCTGTGGAGTTGTGGTGAGTGTTTGACGAATTTTTTTTTTTTTTGGCGGC 120
consensus_14833#1 ------------------------------------------------------------
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 TCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTC 180
consensus_14833#1 ------------------------------------------------------------
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 CGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCGAGG 240
consensus_14833#1 ------------------------------------------------------------
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 CGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCTACCTGGAG 300
consensus_14833#1 ------------------------------------------------------------
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 CAGGAGCTGGACCGGCGGTGCCGCCTCTTCCGCCTCTGGGAGTCCCCCGCCGACCGCCGC 360
consensus_14833#1 ------------------------------------------------------------
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 GACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAG 420
consensus_14833#1 ------------------------------------------------------------
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 GGCGTCGACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCC 480
consensus_14833#1 ------------------------------------------------------------
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 GTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAAC 540
consensus_14833#1 ------------------------------------------------------------
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 ACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCG 600
consensus_14833#1 -------------------TGAGTGTTTGACGAATTTTTTTTTTTTTTTTTTGGCGGCTC 41
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 CTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGC 660
consensus_14833#1 GATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCG 101
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 GACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGG 720
consensus_14833#1 GCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCGAGGCG 161
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 ATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAG 780
consensus_14833#1 GCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCTACCTGGAGCA 221
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 AGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCG 840
consensus_14833#1 GGAGCTGGACCGGCGGTGCCGCCTCTTCCGCCTCTGGGAGTCCCCCGCCGACCGCCGCGA 281
consensus_14833#2 ------------------------------------------------------------
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 AGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAAC 900
consensus_14833#1 CGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGG 341
consensus_14833#2 -----------------------------------CTGAATCAACATCGCCCGGGCCAC- 24
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 CGGGAGGTGATGGAGGCGCTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCG 960
consensus_14833#1 GTCGACGNCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTC 401
consensus_14833#2 CACTTCGACGAGC-----GCCATGGTGCGGCCTGCCGACG-CCGGCTTG-CGGC-CCGGG 76
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 CACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGG 1020
consensus_14833#1 GGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACC 461
consensus_14833#2 CTGGACCTGTTCGAGGACGA-CCGAACGTGCCCGAGGCCCTGTCTCGGGATGGACAAACG 135
consensus_14833#3 ------------------------------------------------------------
consensus_14833#0 CTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTG-CTCGGGATGGACAA-CG 1078
consensus_14833#1 CCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGG-CTCGCCATCGCCGCGCT 520
consensus_14833#2 TCGTGCTGGTCCC-CATGTGGGCCGCGCGA--CGCACCGAGACGCGCCCGGCCCTGGCCG 192
consensus_14833#3 ----------------------------------------------CACGGCCATGGCCG 14
consensus_14833#0 TCGTGCTGGTGCCGCATGTGGGCAGCGCGA--CGCAC-GAGACGCGCACGGCCATGGCCG 1135
consensus_14833#1 CCGCAA-GATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCG 579
* ** ** **
consensus_14833#2 ACCTGGTGCTCGGCCACCTG----GAGGCGCATGTCGCCGGCAAACCGCCTGCTGACCCC 248
consensus_14833#3 ACCTGGTGCTCGGCAACCTG----GAGGCGCATGTCGCCGGCAAGCCNNTN--TGANGCA 68
consensus_14833#0 ACCTGGTGCTCGGCAACCTG----GAGGCGCATGTCGCCGGCAAGCCGCTG-CTGACGCA 1190
consensus_14833#1 ACTTCACGCTCACCACTCGGTTCAGTGGTAAAAGA-GTTGGTATTCTGGGGCTTGGCAGG 638
** * **** * * * * ** * * * ** * * **
consensus_14833#2 GGTGGTGTGAGC-TAATTGAGTGACTGGATGATTCTGATT---TGATTGATTCCCAAGCC 304
consensus_14833#3 GGTGGTGTGNGC-TAATTGAGTGACTGGATGATTNTGATT---TGATTGATTCCAAAGCA 124
consensus_14833#0 GGTGGTGTGAGC-TAATTGAGTGACTGGATGATTCTGATT---TGATTGATTCCAAAGCA 1246
consensus_14833#1 ATAGGCTTAGCCGTAGCAAAAAGAGCTGAGGCATTTGATTGCCCAATCAGCTATCATTCA 698
** * * ** * ** ** * * ***** ** * * *
consensus_14833#2 GGTGCCATTCGACCAAATGTA--GTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCC 362
consensus_14833#3 GGTGCAATTCGACAAAATGTA--GTATGTACTGTTTCAGGATGTGAANAATCTGTTTTCC 182
consensus_14833#0 GGTGCAATTCGACAAAATGTA--GTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCC 1304
consensus_14833#1 AGATCAGAGAAACCATTTCCAAAGTACAAATTTTATCCAAATGTTGTTGACCTGGCAGCC 758
* * ** * * * *** * * * ** **** * *** **
consensus_14833#2 CCTTTTGTAAACCCGGTCGGTCTGGGACGATCCCAGTAATAACGATTTAATATTTGTCCT 422
consensus_14833#3 CTTTTTGTAAACACGGTCGGTCTGGGACGATCC-AGTAATAACGATTTAATATTTGTCAT 241
consensus_14833#0 CTTTTTGTAAACACGGTCGGTCTGGGACGATCC-AGTAATAACGATTTAATATTTGTCAT 1363
consensus_14833#1 AACTGTGATGTGCTAGTCGTAGCATGCTCACTTAATCCAGAGACCCGTCACATT-GTAAA 817
* ** **** * * * * * * * *** **
consensus_14833#2 TGGAAATGTGAAAAGTGTTTTGGGTTGAAAAAAAAAA----------------------- 459
consensus_14833#3 TGGAAAAAAAAAAAA-------AAAAAAAAAAAAAAA----------------------- 271
consensus_14833#0 TGGAAATGTGAAAAGTGTGTTGGGTTGAAACGGAAAAAAAAAAANAAAAAA--------- 1414
consensus_14833#1 CCGTAAGGTCATTGATGCACTAGGACCAGAGGGAGTGCTCATAAACATTGCTCGTGGAGC 877
* ** * * * *
consensus_14833#2 ---------------------------------------------------
consensus_14833#3 ---------------------------------------------------
consensus_14833#0 ---------------------------------------------------
consensus_14833#1 ACATGTGGATGAACCTGAGCTTATATCCGCGCTTCTTGAGAAACGCTTGGG 928
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||