cluster # 1484

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Oryza sativa
cluster # 1484 cluster # 1484 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1484#0 length = 609 sequences # 1

consensus_1484#1 length = 607 sequences # 1

consensusID : consensus_1484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [AAATTCTTGATAAACTTCTCGGTCGTGATCACGATTCTCAATCGCATAGTTCAAGTACGAAAACTGAAACTCATACATCAGTAGATACTGGCAGTCGAGCAACAGATGAAAAACATCACAATGCCGATGGACAAACAACAGCAAGTCATACAGTTCAACACGAAGGCGTCAATATCAAATCATCAGTTTCGTCAGATCTCANATCAACTGTTTCAATTGAAAACCAAAATCGAATCAATGAACTCGTTACAAAATTAGGCTCAACTCATAAACAAATCGACGAGTATTCAAAAAAACAAACAGCTAANATCGATGAACAAATCCNACGTGATATCGATGCAGTCGTTACTCGTACACAAACACGACNAGCTGAACTTCTTCGAAAGGCTAATGAACATACNACACANATCGATNCTGAATATCGTGCACAATTACCAAAAATGGTTGAAGAAATTGATGCTGCTNAAGCAAAACGTATTGCTGANATTGAAATCGAATTANATAATCATNCAGCCGAAATCTTAGAAGCAGCTCGAAAGGGAATCGATGAATTAAATNACANAGCTTCGAATCTCANAATTACNGCTTTTATGGACGCACAAAGCAAAG]

[+] EMBL CA754637             [AAATTCTTGATAAACTTCTCGGTCGTGATCACGATTCTCAATCGCATAGTTCAAGTACGAAAACTGAAACTCATACATCAGTAGATACTGGCAGTCGAGCAACAGATGAAAAACATCACAATGCCGATGGACAAACAACAGCAAGTCATACAGTTCAACACGAAGGCGTCAATATCAAATCATCAGTTTCGTCAGATCTCANATCAACTGTTTCAATTGAAAACCAAAATCGAATCAATGAACTCGTTACAAAATTAGGCTCAACTCATAAACAAATCGACGAGTATTCAAAAAAACAAACAGCTAANATCGATGAACAAATCCNACGTGATATCGATGCAGTCGTTACTCGTACACAAACACGACNAGCTGAACTTCTTCGAAAGGCTAATGAACATACNACACANATCGATNCTGAATATCGTGCACAATTACCAAAAATGGTTGAAGAAATTGATGCTGCTNAAGCAAAACGTATTGCTGANATTGAAATCGAATTANATAATCATNCAGCCGAAATCTTAGAAGCAGCTCGAAAGGGAATCGATGAATTAAATNACANAGCTTCGAATCTCANAATTACNGCTTTTATGGACGCACAAAGCAAAG]




>consensus_1484#0
AAATTCTTGATAAACTTCTCGGTCGTGATCACGATTCTCAATCGCATAGTTCAAGTACGA
AAACTGAAACTCATACATCAGTAGATACTGGCAGTCGAGCAACAGATGAAAAACATCACA
ATGCCGATGGACAAACAACAGCAAGTCATACAGTTCAACACGAAGGCGTCAATATCAAAT
CATCAGTTTCGTCAGATCTCANATCAACTGTTTCAATTGAAAACCAAAATCGAATCAATG
AACTCGTTACAAAATTAGGCTCAACTCATAAACAAATCGACGAGTATTCAAAAAAACAAA
CAGCTAANATCGATGAACAAATCCNACGTGATATCGATGCAGTCGTTACTCGTACACAAA
CACGACNAGCTGAACTTCTTCGAAAGGCTAATGAACATACNACACANATCGATNCTGAAT
ATCGTGCACAATTACCAAAAATGGTTGAAGAAATTGATGCTGCTNAAGCAAAACGTATTG
CTGANATTGAAATCGAATTANATAATCATNCAGCCGAAATCTTAGAAGCAGCTCGAAAGG
GAATCGATGAATTAAATNACANAGCTTCGAATCTCANAATTACNGCTTTTATGGACGCAC
AAAGCAAAG

consensusID : consensus_1484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [GACAAGCTGAACTTCTTCGAAAGGCTAATGAACATACAACACAAATCGATACTGAATATCGTGCACAATTACAAAAAATGGTCGAAGAAATCGATGCTACTAAAGCAAAACGTATTGCTGCAATTGAAATCGAATTAAATAATCATCAAGCCGAAATCTTAGAAGCAGCTCGAAAGGAAATCGATGAATTAAATAACAAAGCTTCGAATCTCAAAATTACGGCTTTAATGGACGCACAAAGCAAAGCTGCTACAGATGCTGAAGCACTTACAGCTCAAGCAGCTAATCTAGGTTCAGCTGCAACTGTTCATCAAGCAAAAGGTACAACAACAATTAAGACCGAAGTTTCGGGAGCAGCAACGACCACCACAGCAGGTGCAGCAACAGCTAATTCGAGTTGTAGCAGTGGCAGTTGTTCGACAGCGACNAGCAAAGAAGCTTGCATGTCTAGTGGCGCTAAAACATGTTCTGATTCACACAAAACAGAATCAACCCAACACCAATCATCAACACGCANACATTAATTTAGTTTAGTTTTCGATGATNATAAAGAANACAACAACGTATTACTGATCGATCATGATGATTAACTTTCTTTTTTCATAGT]

[+] EMBL CA753732             [GACAAGCTGAACTTCTTCGAAAGGCTAATGAACATACAACACAAATCGATACTGAATATCGTGCACAATTACAAAAAATGGTCGAAGAAATCGATGCTACTAAAGCAAAACGTATTGCTGCAATTGAAATCGAATTAAATAATCATCAAGCCGAAATCTTAGAAGCAGCTCGAAAGGAAATCGATGAATTAAATAACAAAGCTTCGAATCTCAAAATTACGGCTTTAATGGACGCACAAAGCAAAGCTGCTACAGATGCTGAAGCACTTACAGCTCAAGCAGCTAATCTAGGTTCAGCTGCAACTGTTCATCAAGCAAAAGGTACAACAACAATTAAGACCGAAGTTTCGGGAGCAGCAACGACCACCACAGCAGGTGCAGCAACAGCTAATTCGAGTTGTAGCAGTGGCAGTTGTTCGACAGCGACNAGCAAAGAAGCTTGCATGTCTAGTGGCGCTAAAACATGTTCTGATTCACACAAAACAGAATCAACCCAACACCAATCATCAACACGCANACATTAATTTAGTTTAGTTTTCGATGATNATAAAGAANACAACAACGTATTACTGATCGATCATGATGATTAACTTTCTTTTTTCATAGT]




>consensus_1484#1
GACAAGCTGAACTTCTTCGAAAGGCTAATGAACATACAACACAAATCGATACTGAATATC
GTGCACAATTACAAAAAATGGTCGAAGAAATCGATGCTACTAAAGCAAAACGTATTGCTG
CAATTGAAATCGAATTAAATAATCATCAAGCCGAAATCTTAGAAGCAGCTCGAAAGGAAA
TCGATGAATTAAATAACAAAGCTTCGAATCTCAAAATTACGGCTTTAATGGACGCACAAA
GCAAAGCTGCTACAGATGCTGAAGCACTTACAGCTCAAGCAGCTAATCTAGGTTCAGCTG
CAACTGTTCATCAAGCAAAAGGTACAACAACAATTAAGACCGAAGTTTCGGGAGCAGCAA
CGACCACCACAGCAGGTGCAGCAACAGCTAATTCGAGTTGTAGCAGTGGCAGTTGTTCGA
CAGCGACNAGCAAAGAAGCTTGCATGTCTAGTGGCGCTAAAACATGTTCTGATTCACACA
AAACAGAATCAACCCAACACCAATCATCAACACGCANACATTAATTTAGTTTAGTTTTCG
ATGATNATAAAGAANACAACAACGTATTACTGATCGATCATGATGATTAACTTTCTTTTT
TCATAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1484#0      ---------AAATTCTTGATAAACTTCTCGGTCGTG-ATCACGATTCTCAATCGCATAGT 50
consensus_1484#1      GACAAGCTGAACTTCTTCGAAAGGCTAATGAACATACAACACAAATCGATACTGAATA-- 58
                               ** *****   **   *   *  * *  * *** * **   *  * ***  

consensus_1484#0      TCAAGTACGAAAACTGAAACTCAT-ACATCAGTAGATACTGGCAGTCGAGCAACAGATGA 109
consensus_1484#1      TCGTGCACAATTACAAAAAATGGTCGAAGAAATCGATGCTACTAAAGCAA-AACGTATTG 117
                      **  * ** *  **  *** *  *   *  * * *** **   *    *  ***  **  

consensus_1484#0      AAAACATCACAATGCCGATGGACAAACAACAGC---AAGTCATA----CAGTTCAACACG 162
consensus_1484#1      CTGCAATTGAAATCGAATTAAATAATCATCAAGCCGAAATCTTAGAAGCAGCTCGAAAGG 177
                           **   ***     *  * ** ** **     ** ** **    *** ** * * *

consensus_1484#0      AAGGCGTCAATATCAAATCATCAGTTTCGTCAGATCTCANATCAACTGTTTCAATTGAAA 222
consensus_1484#1      AAATCGATGA-ATTAAATAACAAAGCT--TCGAATCTCAAAATTACGGCTTTAATGGACG 234
                      **  **   * ** **** *  *   *  **  ****** *   ** * ** *** **  

consensus_1484#0      ACCAAAATCGAATCAATGAACTCGTTACAAAATTAGGCTCAACTCATAAACAAATCGACG 282
consensus_1484#1      CACAAAGCAAAGCTGCTACA---GATGCTGAAGCACTTACAGCTCA--AGCAGCTAATCT 289
                        ****    *     *  *   * * *  **  *    ** ****  * **  *   * 

consensus_1484#0      AGTATTCAAAAAAACAAACAGCTAANATCGATGAACAAATCCNACGTGATATCGATGCAG 342
consensus_1484#1      AG-GTTCAGCTGCA---ACTGTT--CATCAAGCAAAAGGTACAACAACA-ATTAAGACCG 342
                      **  ****     *   ** * *   *** *  ** *  * * **   * **  *  * *

consensus_1484#0      TCGTTACTCGTACACAAAC-ACGACNAGCTGAACTTCTTCGAAAGGCTAATGAACATACN 401
consensus_1484#1      AAGTTTCGGGAGCAGCAACGACCACCACAGCAGGTGCAGCAACAGCTAATTCGAGTTGTA 402
                        *** *  *  **  *** ** ** *    *  * *  * * **   * *  *  *   

consensus_1484#0      ACACANATCGATNCTGAATATCGTGCACAATTACCAAAAATGGTTGAAGAAATTGATGCT 461
consensus_1484#1      GCAGTGGCAGTTGTTCGACA------GCGACNAGCAAAGAAGCTTGCATGT-CTAGTGGC 455
                       **      * *  *  * *       * *  * **** * * *** *     *  **  

consensus_1484#0      GCTNAAGCAAAACGTA--TTGCTGANATTGAAATCGAATTANA--TAATCATNCAGCCGA 517
consensus_1484#1      GCTAAAACATGTTCTGATTCACACAAAACAGAATCAACCCAACACCAATCATCAACACGC 515
                      *** ** **     *   *  *  * *    **** *   *     ******  *  ** 

consensus_1484#0      AATCTTAGAAGCAGCTCGAAAGGGAAT--CGATGAATTAAATNACANAGCTTCG--AATC 573
consensus_1484#1      ANACATTAATTTAGTTTAGTTTTCGATGATNATAAAGAANACAACAACGTATTACTGATC 575
                      *  * *  *   ** *         **    ** **  * *  ***  *  *     ***

consensus_1484#0      --TCANAATTACNGCTTTTATGGACGCACAAAGCAAAG 609
consensus_1484#1      GATCATGATGATTAACTTTCTTTTTTCATAGT------ 607
                        ***  ** *     *** *     ** *