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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14842#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1266 fasta sequence
[CAACCAAGCCGCAGAGAAGAGGAAGGCGGAATCAGTCGAGGGCGAGGCGGCGGCGGCGGCGGCGATGGCGACGGCGAGGAAGGCGCCGCGCATGGTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGCCGCCGATCTGTTCGGAGCGGCGGTCGCGCGGTCGGCGTCGGCGCGTCACGCGGTGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGGCGCTGCAGTGGCCTGGCACCATCTGCGCCTCAACCCGCCACTGCTGCGCCATCAACGGATGCTGCCGCTCGGAGCCGCTCC-AGACGTTCACGATCCATGGGC-TGTGGCCGGACTACGACGACGGGACCTGGCCGGCGTGCTGCCGCCACACCAGCTTCGACATGGACAAGATATTGCCCCTGAAGCCGACGCTTGAGAAGTACTGGCCGTCCCTCTACTGC-TCATCCTCTTCCACTTGCTTCAGTGGCAAGGGGCCCTTCTGGGCTCATGAGTGGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATTAGAGTATTTCACCACTGCTCTTGACCTCTACTTCAAATACAACGTCACGGAAATGTTGG-CAAGTGGTGGTATCCA-TGTTTCAAAT-GGTAAACAATATGCGC-TAACTGATGTCATTGAT-GCCATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACCAATGAAAACGTATCGAAGAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGACCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAATTACATGGCCATGATGAAGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACAACGGAGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATAGTCATTGGTCAGGGTCATCTGCGACTGCAATCTGCTGAATTATAATGGACAGTGGCAATCGGTCTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK105061 [CAACCAAGCCGCAGAGAAGAGGAAGGCGGAATCAGTCGAGGGCGAGGCGGCGGCGGCGGCGGCGATGGCGACGGCGAGGAAGGCGCCGCGCATGGTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGCCGCCGATCTGTTCGGAGCGGCGGTCGCGCGGTCGGCGTCGGCGCGTCACGCGGTGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGGCGCTGCAGTGGCCTGGCACCATCTGCGCCTCAACCCGCCACTGCTGCGCCATCAACGGATGCTGCCGCTCGGAGCCGCTCC AGACGTTCACGATCCATGGGC TGTGGCCGGACTACGACGACGGGACCTGGCCGGCGTGCTGCCGCCACACCAGCTTCGACATGGACAAGATATTGCCCCTGAAGCCGACGCTTGAGAAGTACTGGCCGTCCCTCTACTGC TCATCCTCTTCCACTTGCTTCAGTGGCAAGGGGCCCTTCTGGGCTCATGAGTGGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATTAGAGTATTTCACCACTGCTCTTGACCTCTACTTCAAATACAACGTCACGGAAATGTTGG CAAGTGGTGGTATCCA TGTTTCAAAT GGTAAACAATATGCGC TAACTGATGTCATTGAT GCCATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACCAATGAAAACGTATCGAAGAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGACCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAATTACATGGCCATGATGAAGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACAACGGAGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATAGTCATTGGTCAGGGTCATCTGCGACTGCAATCTGCTGAATTATAATGGACAGTGGCAATCGGTCTGAAC ]
[+] EMBL AK100403 [ AACCAAGCCGCAGAGAAGAGGAAGGCGGAATCAGTCGAGGGCGA GGCGGCGGCGATGGCGACGGCGAGGAAGGCGCCGCGCATGGTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGCCGCCGATCTGTTCGGAGCGGCGGTCGCGCGGTCGGCGTCGGCGCGTCACGCGGTGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGGCGCTGCAGTGGCCTGGCACCATCTGCGCCTCAACCCGCCACTGCTGCGCCATCAACGGATGCTGCCGCTCGGAGCCGCTCC AGACGTTCACGATCCATGGGC TGTGGCCGGACTACGACGACGGGACCTGGCCGGCGTGCTGCCGCCACACCAGCTTCGACATGGACAAGATATTGCCCCTGAAGCCGACGCTTGAGAAGTACTGGCCGTCCCTCTACTGC TCATCCTCTTCCACTTGCTTCAGTGGCAAGGGGCCCTTCTGGGCTCATGAGTGGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATTAGAGTATTTCACCACTGCTCTTGACCTCTACTTCAAATACAACGTCACGGAAATGTTGG CAAGTGGTGGTATCCA TGTTTCAAAT GGTAAACAATATGCGC TAACTGATGTCATTGAT GCCATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACCAATGAAAACGTATCGAAGAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGACCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAATTACATGGCCATGATGAAGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACAACGGAGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATAGTCATTGGTCAGGGTCATCTGCGACTGCAATCTGCTGAATTATAATGGACAGTGGC ]
[+] EMBL AK065055 [ AACCAAGCCGCAGAGAAGAGGAAGGCGGAATCAGTCGAGGGCGAGGCGGCGGCGGCGGCGGCGATGGCGACGGCGAGGAAGGCGCCGCGCATGGTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGCCGCCGATCTGTTCGGAGCGGCGGTCGCGCGGTCGGCGTCGGCGCGTCACGCGGTGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGGCGCTGCAGTGGCCTGGCACCATCTGCGCCTCAACCCGCCACTGCTGCGCCATCAACGGATGCTGCCGCTCGGAGCCGCTCC AGACGTTCACGATCCATGGGC TGTGGCCGGACTACGACGACGGGACCTGGCCGGCGTGCTGCCGCCACACCAGCTTCGACATGGACAAGATATTGCCCCTGAAGCCGACGCTTGAGAAGTACTGGCCGTCCCTCTACTGC TCATCCTCTTCCACTTGCTTCAGTGGCAAGGGGCCCTTCTGGGCTCATGAGTGGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATTAGAGTATTTCACCACTGCTCTTGACCTCTACTTCAAATACAACGTCACGGAAATGTTGG CAAGTGGTGGTATCCA TGTTTCAAAT GGTAAACAATATGCGC TAACTGATGTCATTGAT GCCATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACCAATGAAAACGTATCGAAGAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGACCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAATTACATGGCCATGATGAAGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACAACGGAGAATGTG ]
[+] EMBL AK061505 [ ACCAAGCCGCAGAGAAGAGGAAGGCGGAATCAGTCGAGGGCGAGGCGGCGGCGGCGGCGGCGATGGCGACGGCGAGGAAGGCGCCGCGCATGGTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGCCGCCGATCTGTTCGGAGCGGCGGTCGCGCGGTCGGCGTCGGCGCGTCACGCGGTGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGGCGCTGCAGTGGCCTGGCACCATCTGCGCCTCAACCCGCCACTGCTGCGCCATCAACGGATGCTGCCGCTCGGAGCCGCTCC AGACGTTCACGATCCATGGGC TGTGGCCGGACTACGACGACGGGACCTGGCCGGCGTGCTGCCGCCACACCAGCTTCGACATGGACAAGATATTGCCCCTGAAGCCGACGCTTGAGAAGTACTGGCCGTCCCTCTACTGC TCATCCTCTTCCACTTGCTTCAGTGGCAAGGGGCCCTTCTGGGCTCATGAGTGGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATTAGAGTATTTCACCACTGCTCTTGACCTCTACTTCAAATACAACGTCACGGAAATGTTGG CAAGTGGTGGTATCCA TGTTTCAAAT GGTAAACAATATGCGC TAACTGATGTCATTGAT GCCATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACCAATGAAAACGTATCGAAGAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGACCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAATTACATGGCCATGATGAAGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACAACGGAGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATAGTCATTGGTCAGGGTCATCTGCGACTGCAATCTGCTGAATTATAATGGACAGTGGCAATCGGTCTGAA ]
[+] EMBL OSC100061 [ gnAGAGAAGAGGAAGGCGGAATCAGTCGAGGGCGAGGCGGCGGCGGCGGCGNCGATGGCGACGGCGAGGAAGGCGNCGCGCATGGTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGNCGNCGATCTGTTCGGAGCGTCGGTCGCGCGGTCGNCGTCGACGCGTCACGNGGTGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGNCGCTGCAGTGGCCTGGCACCATCTGCGCCTCAACCCGNCACTGCTNCGNCATCAACGNATGCTGNCGCTCGGAGACGCTCCAAGACGTTCACGATCCATGGGC TGTGGCCGGACTACGACG ]
[+] EMBL OSC106481 [ AGAGAAGAGGAAGGCGGAATCAGTCGAGGGCGAGGCGGCGGCGGCGGCGGCGATGGCGACGGCGAGGAAGGCGCCGCGCATGGTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGCCGCCGATCTGTTCGGAGCGGCGGTCGCGCGGTCGGCGTCGGCGCGTCACG GGTGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGGCGCTGCAGTGGCCTGGCACCATCTGCGCCTCAACCCGCCAATGCTGCGCCATCAACGGATGCTGCCGCTCGGAGCCGNTNC AGACGTTCACGATCCATTGGCTTTTGGC ]
[+] EMBL CB660432 [ GCGGAATCAGTCGAGGGCGAGGCGGCGGCGGCCCTTGCGATGGCGACGGCGAGGAAGGCGCCGCGCATGGTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGCCGCCGATCTGTTCGGAGCGGCGGTCGCGCGGTCGGCGTCGGCGCGTCACGCGGTGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGGCGCTGCAGTGGCCTGGCACCATCTGCGCCTCAACCCGCCACTGCTGCGCCATCAACGGATGCTGCCGCTCGGAGCCGCTCC AGACGTTCACGATCCATGGGC TGTGGCCGGACTACGACGACGGGACCTGGCCGGCGTGCTGCCGCCACACCAGCTTCGACATGGACAAGATATTGCCCCTGAAGCCGACGCTTGAGAAGTACTGGCCGTCCCTCTACTGC TCATCCTCTTCCACTTGCTTCAGTGGCAAGGGGCCCTTCTGGGCTCATGAGTGGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATTAGAGTATTTCACCACTGCTCTTGACCTCTACTTCAAATACAACGTCACGGAAATGTTGG CAAGTGGTGGTATCCA TGTTTCAAAT GGTAAACAATATGCGC TAACTGATGTCATTGAT GCCATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACCAATGAAAACGTATCCAAGAAGAAGTATTGCCC ]
[+] EMBL AK121862 [ ATCAGTCGAGGGCGAGGCGGCGGCGGCGGCGGCGATGGCGACGGCGAGGAAGGCGCCGCGCATGGTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGCCGCCGATCTGTTCGGAGCGGCGGTCGCGCGGTCGGCGTCGGCGCGTCACGCGGTGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGGCGCTGCAGTGGCCTGGCACCATCTGCGCCTCAACCCGCCACTGCTGCGCCATCAACGGATGCTGCCGCTCGGAGCCGCTCC AGACGTTCACGATCCATGGGC TGTGGCCGGACTACGACGACGGGACCTGGCCGGCGTGCTGCCGCCACACCAGCTTCGACATGGACAAGATATTGCCCCTGAAGCCGACGCTTGAGAAGTACTGGCCGTCCCTCTACTGC TCATCCTCTTCCACTTGCTTCAGTGGCAAGGGGCCCTTCTGGGCTCATGAGTGGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATTAGAGTATTTCACCACTGCTCTTGACCTCTACTTCAAATACAACGTCACGGAAATGTTGG CAAGTGGTGGTATCCA TGTTTCAAAT GGTAAACAATATGCGC TAACTGATGTCATTGAT GCCATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACCAATGAAAACGTATCGAAGAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGACCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAATTACATGGCCATGATGAAGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACAACGGAGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTAT ]
[+] EMBL OSC31391 [ GACCTGGCCGGNGTGCTGCCGCCANACCAGCTTCGACATGGACAAGATATTGCCCCTGAAGCCGNCGCTTGAGAAGTACTGGNCGTCCCTCTACNCCGTCATCCTCTTCCACTTGCTTCAGTNGCAAGGGGCCCTTCTGGGCTCATGAGTAGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATTAGAGTATTTCACC ]
[-] EMBL CA763096 [ GCTCTTGCCCTCTCCCTCAAATACAACGTCCCGGAAATGTTGG CAAGTGGTGGTATNTA TGTTCCAAAT GGTGAACAATATGCGC TAACTGATGTCATTGAT GCCATCAAATGTGCTTTTGGGGCCTCCCCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGCCAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACCAATGAAAACGTATC GAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGACCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAATTACATGGCCATGATGAAGCCGGTAGCTCAGGGCTTTTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACAACGGAGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTATGCAAGGTTGGAAAATAGTTCGTCCACGTATATAGTCATTGGTCAGGGTCATCTGCGACTGCAATCTGCTGAATTATAATGGACAGTGGCAATCGGTCTGAACTTTTCAAAAAAAAAAAA ]
[+] EMBL BM419429 [ TGGCCAATTGTTTGTATCTAGTGTTTCAAATGGGTACAC ATATGCGCTTAACTGATGTCATTGATGGCCATCAAATGTGCTTTTGGGCCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACC ATGAAAACGTATC GAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGACCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAATTACATGGCCATGATGAAGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACCACGGAGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATAGTCATTGGTCAGGGTCATCTGCGACTGCAATCTGCTGAATTATAATGGACAGTGGC ATCGGTCTGAAAAAAAAA ]
[+] EMBL AU068228 [ CTGATGNCATTGAT GCCATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACCAATGAAAACGTATCGAAGAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGNCCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAATTACATGGCCATGATGAAGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACAACGGAGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATAGTCATTGGTCAGGGTCATCTGCGACTGCAAaaaaaaaaa ]
[+] EMBL AU075968 [ CGATTATTNCATTTGTAAGCNCGGCACGCCAGAACAACGGNGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATAGTCATTGGTCAGGGTCATNTGCGACTGCAATCTGCTGAATTNTAATGGACAGTGGCAATCGGTNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14842#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 828 fasta sequence
[AGGGGACCTGGCCGGCGTGCTGCCGCCACACCAGCCTCGACATGGACAAGATATTGCCCCTGAAGCCGACGCTTGAGAAGTACTGGCCGTCCCTCTACTGCTCATCCTCTTCCACTAGCTTCAGTGGCAAGGGGCCCTTCTGGGCTCATGAGTGGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATTAGAGTATTTCACCACTGCTCTTGACCTCTACTTCAAATACAACGTCACGGAAATGTTGGCAAGTGGTGGTATCTATGTTTCAAATGGTAAACAATATGCGCTAACTGATGTCATTGATGCCATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACCAATGAAAACGTATCGAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGACCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAANTACATGGCCATGATGAAGCCGGTAGNTCAAGGCTCTTANCTGCTTAAGACATACTGGGGCCGGCATTGANGGTCAAGGGAAAGNATATCTAGATAACCTCGATTATTACATTTGNAAGCCCGGCACGCCANAACAACGGGANAATGNGATTGGGGCCTGGAAAANCAATTGGCTTTNTGTACTATGCAAGGTTGGGAAATTTAAAAAAAAAAAAAAAAAAAAAAAAANG]
[+] EMBL CA763847 [AGGGGACCTGGCCGGCGTGCTGCCGCCACACCAGCCTCGACATGGACAAGATATTGCCCCTGAAGCCGACGCTTGAGAAGTACTGGCCGTCCCTCTACTGCTCATCCTCTTCCACTAGCTTCAGTGGCAAGGGGCCCTTCTGGGCTCATGAGTGGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATTAGAGTATTTCACCACTGCTCTTGACCTCTACTTCAAATACAACGTCACGGAAATGTTGGCAAGTGGTGGTATCTATGTTTCAAATGGTAAACAATATGCGCTAACTGATGTCATTGATGCCATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTACCAATGAAAACGTATCGAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGACCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAANTACATGGCCATGATGAAGCCGGTAGNTCAAGGCTCTTANCTGCTTAAGACATACTGGGGCCGGCATTGANGGTCAAGGGAAAGNATATCTAGATAACCTCGATTATTACATTTGNAAGCCCGGCACGCCANAACAACGGGANAATGNGATTGGGGCCTGGAAAANCAATTGGCTTTNTGTACTATGCAAGGTTGGGAAATTTAAAAAAAAAAAAAAAAAAAAAAAAANG]
consensusID : consensus_14842#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[GGCCAACATATGACCCCATAGTACATGCTAATTTTACTCGGGAGATCATAACAGTCGAAAGTGGGGTTTATGGATATTTTTCCCCATCCTAAGATACGATTGCCCCGAGCAAGAATTTCATGGCCCTGATGAAGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATTTAGATAACTCGATTATTACATTTGTAAGCCCGGCCCGCCAGAACAACGGAGAATGTGATTGTGTTTGAAAAATCAATTGCTTTATGTTCTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATAGTCATTGGTCAGGGTCATTTGCGGCTGCAATCTGCGGAATTATAATGGACAGTGGCAATCGGTTTGAACTTTGGGGGCTTGGAATATTTATCATGTATGTGCCCAGA]
[-] EMBL CB660433 [GGCCAACATATGACCCCATAGTACATGCTAATTTTACTCGGGAGATCATAACAGTCGAAAGTGGGGTTTATGGATATTTTTCCCCATCCTAAGATACGATTGCCCCGAGCAAGAATTTCATGGCCCTGATGAAGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATTTAGATAACTCGATTATTACATTTGTAAGCCCGGCCCGCCAGAACAACGGAGAATGTGATTGTGTTTGAAAAATCAATTGCTTTATGTTCTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATAGTCATTGGTCAGGGTCATTTGCGGCTGCAATCTGCGGAATTATAATGGACAGTGGCAATCGGTTTGAACTTTGGGGGCTTGGAATATTTATCATGTATGTGCCCAGA]
consensusID : consensus_14842#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence
[CCCTTACTAAAACTGCCACCAACGAAAACCTATCGTAGAAGACCTGCCCTCGATACATCACCCTGCCAACATATGACCCCATTGCACATGTTAATTCTGTTGGGGAGATCATAACAGTCGAAAGTGAGGTGTCTGGAGATCTGAACACATCGTAAGAGAAGAATACCGCGAGCAAGAATCACATGGCCATGATGTAGCCGGTAGTTCAGGGCTATTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATATAGATAACTCGATGACATACATTGGTAAGCAGGGCACGCCAGAACAACGGAGAATGTGATTGCGTGTGAAAAAAAAAAAGCTTAAGCTTTTTTTTTTTCACGATCACATATTCAGTTATTCACATGCATTTACTTGCAGTTCATAGGCA]
[-] EMBL AU165142 [CCCTTACTAAAACTGCCACCAACGAAAACCTATCGTAGAAGACCTGCCCTCGATACATCACCCTGCCAACATATGACCCCATTGCACATGTTAATTCTGTTGGGGAGATCATAACAGTCGAAAGTGAGGTGTCTGGAGATCTGAACACATCGTAAGAGAAGAATACCGCGAGCAAGAATCACATGGCCATGATGTAGCCGGTAGTTCAGGGCTATTAGCTGCTTAAGACATACTGGGGCCGGCATTGAGGTTCAAGGAAATGTATATATAGATAACTCGATGACATACATTGGTAAGCAGGGCACGCCAGAACAACGGAGAATGTGATTGCGTGTGAAAAAAAAAAAGCTTAAGCTTTTTTTTTTTCACGATCACATATTCAGTTATTCACATGCATTTACTTGCAGTTCATAGGCA]
consensusID : consensus_14842#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[CAGAGAAGAGGAAGGCGGAATCAGTCGAGGGCGAGGCGGCGGCGGCGGCGGCGATGGCGACGGCGAGGAAGGCGCCGCAATNNGTTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGCCGCCGATCTGTTCGGAGCGGGTNCGCGCGGNTACGGCGTCGGCGGTCACGGTNGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGGCTGNCAGTNGCCTGGCACCATCTNCGCCTCAACCCGCCACTGCTGCGNCATCAACGGATGCTGCCGCTCGGAGCCGCTCCAGACGTTCACGATCCATGGGCTGTGGCGGACTACGACGACGGGACCTNGCCGGCGTTCTGCNCACAACAGCTTCGACATGNACAAGATATTGCCCTNAAGCCGACGCTTNAAAAGTAC]
[+] EMBL AU068229 [CAGAGAAGAGGAAGGCGGAATCAGTCGAGGGCGAGGCGGCGGCGGCGGCGGCGATGGCGACGGCGAGGAAGGCGCCGCAATNNGTTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGCCGCCGATCTGTTCGGAGCGGGTNCGCGCGGNTACGGCGTCGGCGGTCACGGTNGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGGCTGNCAGTNGCCTGGCACCATCTNCGCCTCAACCCGCCACTGCTGCGNCATCAACGGATGCTGCCGCTCGGAGCCGCTCCAGACGTTCACGATCCATGGGCTGTGGCGGACTACGACGACGGGACCTNGCCGGCGTTCTGCNCACAACAGCTTCGACATGNACAAGATATTGCCCTNAAGCCGACGCTTNAAAAGTAC]
consensusID : consensus_14842#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence
[GCCAACATATGNCCCCATAGTANATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACANCCTAAGATACGATTCCCGCGAGCAAGAATTACATGGCCATGATGAANCCGGTAGTTCAGGGCTNTTAGCTGCTTAAGACATACTGGGNCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACAACGGAGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATAGTCATTGGTCAGGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C96756 [GCCAACATATGNCCCCATAGTANATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACANCCTAAGATACGATTCCCGCGAGCAAGAATTACATGGCCATGATGAANCCGGTAGTTCAGGGCTNTTAGCTGCTTAAGACATACTGGGNCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACAACGGAGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATAGTCATTGGTCAGGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14842#1 ------------------------------------------------------------
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 CAACCAAGCCGCAGAGAAGAGGAAGGCGGAATCAGTCGAGGGCGAGGCGGCGGCGGCGGC 60
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 ------------------------------------------------------------
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 GGCGATGGCGACGGCGAGGAAGGCGCCGCGCATGGTGGCGATCTGGGCGGTGGTGGTGGT 120
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 ------------------------------------------------------------
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 GGTGGTCGCCGCCGATCTGTTCGGAGCGGCGGTCGCGCGGTCGGCGTCGGCGCGTCACGC 180
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 ------------------------------------------------------------
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 GGTGGGGAAGAAGCAGCGGGAGTTCGACTACTTCGCGCTGGCGCTGCAGTGGCCTGGCAC 240
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 ------------------------------------------------------------
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 CATCTGCGCCTCAACCCGCCACTGCTGCGCCATCAACGGATGCTGCCGCTCGGAGCCGCT 300
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 -----------------------------------------AGGGGACCTGGCCGGCGTG 19
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 CCAGACGTTCACGATCCATGGGCTGTGGCCGGACTACGACGACGGGACCTGGCCGGCGTG 360
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 CTGCCGCCACACCAGCCTCGACATGGACAAGATATTGCCCCTGAAGCCGACGCTTGAGAA 79
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 CTGCCGCCACACCAGCTTCGACATGGACAAGATATTGCCCCTGAAGCCGACGCTTGAGAA 420
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 GTACTGGCCGTCCCTCTACTGCTCATCCTCTTCCACTAGCTTCAGTGGCAAGGGGCCCTT 139
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 GTACTGGCCGTCCCTCTACTGCTCATCCTCTTCCACTTGCTTCAGTGGCAAGGGGCCCTT 480
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 CTGGGCTCATGAGTGGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATT 199
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 CTGGGCTCATGAGTGGGAGAAACATGGAACATGCTCATCCCCGGTAGTTAAGGATGAATT 540
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 AGAGTATTTCACCACTGCTCTTGACCTCTACTTCAAATACAACGTCACGGAAATGTTGGC 259
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 AGAGTATTTCACCACTGCTCTTGACCTCTACTTCAAATACAACGTCACGGAAATGTTGGC 600
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 AAGTGGTGGTATCTATGTTTCAAATGGTAAACAATATGCGCTAACTGATGTCATTGATGC 319
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 AAGTGGTGGTATCCATGTTTCAAATGGTAAACAATATGCGCTAACTGATGTCATTGATGC 660
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 CATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGA 379
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 CATCAAATGTGCTTTTGGGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGA 720
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 ACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTAC 439
consensus_14842#3 -----------------------------------------CCCTTACTAAAACTGCCAC 19
consensus_14842#2 ------------------------------------------------------------
consensus_14842#5 ------------------------------------------------------------
consensus_14842#0 ACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTTGATTGCCTTACTACTACTGCTAC 780
consensus_14842#4 ----------------------------------------------CAGAGAAGAGGAAG 14
consensus_14842#1 CAATGAAAACGTATCGAAGAAGTA---TTGCCCTCGATACATCACCCTGCCAACATATGA 496
consensus_14842#3 CAACGAAAACCTATCGTAGAAGAC---CTGCCCTCGATACATCACCCTGCCAACATATGA 76
consensus_14842#2 -----------------------------------------------GGCCAACATATGA 13
consensus_14842#5 ------------------------------------------------GCCAACATATGN 12
consensus_14842#0 CAATGAAAACGTATCGAAGAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATATGA 840
consensus_14842#4 GCGGAATCAGTCGAGGGCGAGGCGGCGGCGGCGGCGGCGATGGCGACGGCGAGGAAGGCG 74
** * *
consensus_14842#1 CCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGG 556
consensus_14842#3 CCCCATTGCACATGTTAATTCTGTTGGGGAGATCATAACAGTCGAAAGTGAGGTGTCTGG 136
consensus_14842#2 CCCCATAGTACATGCTAATTTTACTCGGGAGATCATAACAGTCGAAAGTGGGGTTTATGG 73
consensus_14842#5 CCCCATAGTANATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGG 72
consensus_14842#0 CCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGG 900
consensus_14842#4 CCGCAATNNGTTGGCGATCTGGGCGGTGGTGGTGGTGGTGGTCGCCGCCGATCTGTTCGG 134
** ** * * * ** * * * **** * * * **
consensus_14842#1 AT-ATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAANTACATGGCCATGATGA 615
consensus_14842#3 AG-ATCTGAACACATCGTAAGAGAAGAATACCGCGAGCAAGAATCACATGGCCATGATGT 195
consensus_14842#2 AT-ATTTTTCCCCATCCTAAGATACGATTGCCCCGAGCAAGAATTTCATGGCCCTGATGA 132
consensus_14842#5 AT-ATCTTTACACANCCTAAGATACGATTCCCGCGAGCAAGAATTACATGGCCATGATGA 131
consensus_14842#0 AT-ATCTTTACACATCCTAAGATACGATTACCGCGAGCAAGAATTACATGGCCATGATGA 959
consensus_14842#4 AGCGGGTNCGCGCGGNTACGGCGTCGGCGGTCACGGTNGGGGAAGAAGCAGCGGGAGTTC 194
* * * * * * * ** * * ** *
consensus_14842#1 AGCCGGTAGNTCAAGGCTCTTANCTGCTTAAGACATACTGGG---------GCCGGCATT 666
consensus_14842#3 AGCCGGTAGTTCAGGGCTATTAGCTGCTTAAGACATACTGGG---------GCCGGCATT 246
consensus_14842#2 AGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGG---------GCCGGCATT 183
consensus_14842#5 ANCCGGTAGTTCAGGGCTNTTAGCTGCTTAAGACATACTGGG---------NCCGGCATT 182
consensus_14842#0 AGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATACTGGG---------GCCGGCATT 1010
consensus_14842#4 GACTACTTCGCGCTGGCTGNCAGTNGCCTGGCACCATCTNCGCCTCAACCCGCCACTGCT 254
* * **** * ** * ** ** * ** *
consensus_14842#1 GANGG-TCAAGGGAA--AGNATATCTAGATAACCTCGATTAT-TAC-ATTTGNAAGC-CC 720
consensus_14842#3 GAGGT-TCAAGGAAA--TGTATATATAGATAAC-TCGATGACATAC-ATTGGTAAGC-AG 300
consensus_14842#2 GAGGT-TCAAGGAAA--TGTATATTTAGATAAC-TCGATTAT-TAC-ATTTGTAAGC-CC 236
consensus_14842#5 GAGGT-TCAAGGAAA--TGTATATCTAGATAAC-TCGATTAT-TAC-ATTTGTAAGC-AC 235
consensus_14842#0 GAGGT-TCAAGGAAA--TGTATATCTAGATAAC-TCGATTAT-TAC-ATTTGTAAGC-AC 1063
consensus_14842#4 GCGNCATCAACGGATGCTGCCGCTCGGAGCCGCTCCAGACGTTCACGATCCATGGGCTGT 314
* **** * * * * * * ** ** **
consensus_14842#1 GGCACGCCANAACAACGGGANAATGNGATTGGGGCCTGGAAAANCAA---------TTGG 771
consensus_14842#3 GGCACGCCAGAACAACGG-AGAATGTGATTGCGTGTGAAAAAAAAAAAGCTTAAGCTTTT 359
consensus_14842#2 GGCCCGCCAGAACAACGG-AGAATGTGATTGTGTTTGAAAAATCAATTGCTT----TATG 291
consensus_14842#5 GGCACGCCAGAACAACGG-AGAATGTGATTGTGTCTGAAAAATCAATTGCTT----TATG 290
consensus_14842#0 GGCACGCCAGAACAACGG-AGAATGTGATTGTGTCTGAAAAATCAATTGCTT----TATG 1118
consensus_14842#4 GGCGGACTACGACGACGG--GACCTNGCCGGCGTTCTGCNCA-CAACAGCTTCGA-CATG 370
*** * * ** **** * * * * * *
consensus_14842#1 CTTTNTGTACTATGCAAGGTTGGGAAATTTAAAAAAAAAAAAAAAAAAAAAAAAANG--- 828
consensus_14842#3 TTTTTTTCACGATCACATATTCAGTTATTCACATGCATTTACTTGCAGTTCATAGGCA-- 417
consensus_14842#2 TTCTATGCAAGGTTGGAAAATAGTTCGTCCA--TGTATATAGTCATTGGTCAGGGTCATT 349
consensus_14842#5 TACTATGCAAGGTTGGAAAATAGTTCGTCCA--TGTATATAGTCATTGGTCAGGGTCAAA 348
consensus_14842#0 TACTATGCAAGGTTGGAAAATAGTTCGTCCA--TGTATATAGTCATTGGTCAGGGTCATC 1176
consensus_14842#4 NACAAGATATTGCCCTNAAGCCGACGCTTNAAAAGTAC---------------------- 408
* * * *
consensus_14842#1 ------------------------------------------------------------
consensus_14842#3 ------------------------------------------------------------
consensus_14842#2 TGCGGCTGCAATCTGCGGAATTATAATGGACAGTGGCAATCGGTTTGAACTTTGGGGGCT 409
consensus_14842#5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 387
consensus_14842#0 TGCGACTGCAATCTGCTGAATTATAATGGACAGTGGCAATCGGTCTGAACAAAAAAAAAA 1236
consensus_14842#4 ------------------------------------------------------------
consensus_14842#1 ------------------------------
consensus_14842#3 ------------------------------
consensus_14842#2 TGGAATATTTATCATGTATGTGCCCAGA-- 437
consensus_14842#5 ------------------------------
consensus_14842#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1266
consensus_14842#4 ------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||