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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1358 fasta sequence
[TACTTACCCTCCCTTCTGATCCCCTGTTTCCCCTGGTCATGGCGGCGAGATCTCCGTGTAGGAGTGAGATCGCCGCCTCCTCCTCATGGTGTTTCCTGGTGCGGCGCGCGTGAGAGCTCGGCCCGAGCCCGAGCCCTCTCGCTTTTGCCGTGCCGGATCTGATTCTGTCCGTGCTAGTGTTAGTGTCACGTTTTGGTGTAGACAGTAGACTCATGAAACGAGGAGAGGCTTTTTTGTAGGATGGGTCAACTTTTAGGAACTTGTCCAAAGTTTAACAACTCTCAAGGATGAACTGGGAATAGTGGCGCTGTTATACATTAGGAGTTGGTCTGCGAGAAATTTGGATGGGATTAGTTGCGGATCTTCCATCAGCTAGTGGAGCTTAAAGATACTGATGTGTTGTCCGTACTGAAATGCACTTCTTTGCCTTGGCAAAACCCCAGTCTCCCCCATAAATTTAGTTTTGTTTGCTTAGCTTTACCAAATGCCATCAGCATACATGGTGTAAAATCATATACTTTTGTAACGAACGAATTGTGTTTATTTGCATTTCAACTAGTGCTTTCTTCCTAATTTATCAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATA-CCT-AC-ATTCTCGAGGCCGC-TGAAA-CTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT-AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA-TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA-TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAAAACTTGTCCTTTCTCCAAAAAATATTTTGCAAGATGAATCAGAAGT]
[+] EMBL AK103416 [TACTTACCCTCCCTTCTGATCCCCTGTTTCCCCTGGTCATGGCGGCGAGATCTCCGTGTAGGAGTGAGATCGCCGCCTCCTCCTCATGGTGTTTCCTGGTGCGGCGCGCGTGAGAGCTCGGCCCGAGCCCGAGCCCTCTCGCTTTTGCCGTGCCGGATCTGATTCTGTCCGTGCTAGTGTTAGTGTCACGTTTTGGTGTAGACAGTAGACTCATGAAACGAGGAGAGGCTTTTTTGTAGGATGGGTCAACTTTTAGGAACTTGTCCAAAGTTTAACAACTCTCAAGGATGAACTGGGAATAGTGGCGCTGTTATACATTAGGAGTTGGTCTGCGAGAAATTTGGATGGGATTAGTTGCGGATCTTCCATCAGCTAGTGGAGCTTAAAGATACTGATGTGTTGTCCGTACTGAAATGCACTTCTTTGCCTTGGCAAAACCCCAGTCTCCCCCATAAATTTAGTTTTGTTTGCTTAGCTTTACCAAATGCCATCAGCATACATGGTGTAAAATCATATACTTTTGTAACGAACGAATTGTGTTTATTTGCATTTCAACTAGTGCTTTCTTCCTAATTTATCAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATA CCT AC ATTCTCGAGGCCGC TGAAA CTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTAAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAATTGACTTG ]
[+] EMBL AU085797 [ TTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATA CCT AC ATTCTCGAGGCCGC TGAAA CTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAA ]
[-] EMBL CF279625 [ GTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATA CCT AC ATTCTCGAGGCCGC TGAAA CTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTTTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAAA ]
[-] EMBL CF277880 [ CTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATA CCT AC ATTCTCGAGGCCGC TGAAA CTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTTTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAAA ]
[+] EMBL BI798476 [ cccCCCCTGAAGATACCCTCACTTTTCTGGAGCCCTCTTGAAACCTCCCGGGGTGGA CTCCCATTCTCAT CCGT CTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTACTTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAACTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAA ]
[-] EMBL CF279597 [ CCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATC TAGTN TTAGTCTTTTGATGGGACCGAGTCATATGAGTTGTGACAATAAAAGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAAAACTTGTCCTTTCTCCAAAAAA ]
[-] EMBL BU667038 [ CTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA GGATAC TTCTGACAAGCATTTCGTACCCTAA GCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTNCGGTCGCTCTTTTTAT CTTCTGT GGCACATT CTGATTTTCAAAGT GACTCCCTGTTCAGTTAGTTTTCG ]
[+] EMBL CF312303 [ CTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAATTGACTTGTCCTTTCTCCACACGCTATTTTGCAAGATGAATCAGAAGT]
consensusID : consensus_14845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 897 fasta sequence
[TGGACTGAAGGAGTAGAAACCATCTTTTCGACTCGGCTTGACCCAACCCAACCTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA-GCG-GTG-CACAAGGTAAAGC-TTATA-GGCCCGGACGGTGTC-GAGCACGAG-TTTGAA-GCCCCTGAAGATACCTACATTC-TCGA--GGCCGCTGAAACT-GCCGGGGTGGAGCTGCCATTCTCATGCCGTGC-TGGATCATGCTCCACATGTGC-GGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA-GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTCAAAGTGGACTCGCTGCTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAACTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAAAGGTATTATTGTGGATCACTTCCAGTTGGAAAAAATTGACTTGNCCTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGG]
[+] EMBL CF277881 [TGGACTGAAGGAGTAGAAACCATCTTTTCGACTCGGCTTGACCCAACCCAACCTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GCG GTG CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGAGCTGCCATTCTCATGCCGTGC TGGATCATGCTCCACATGTGC GGGTAAGATG ]
[+] EMBL CB097137 [ TCGACTCGGCTTGACCCAACCCAACCTACCTCGCGATCCCCC CCTCCGCCGCCGTCTCG GAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GCG GTG CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGAGCTGCCATTCTCATGCCGTGC TGGATCATGCTCCACATGTGC GGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTCAAAGTGGACTCGCTGCTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGNTCAGCATTTCAAACTGCGNTTGGTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGNTATCAana ]
[+] EMBL CF279596 [ CGGCTTGACCCAACCCAACCTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GCG GTG CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACTGGCCGGGGTGGAGCTGCCATTCTCATGCCGTGC TGGATCATGCTCCACATGTGC GGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGC ]
[+] EMBL C27992 [ CAACCCAACCTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGTTCTCCAACAAGTTCAGGGTGTCCGCGACA CGTNNG CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAGTTTTNAA GCCCCTGAAGATACCTACATTC T ]
[+] EMBL AU063700 [ CTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GTG CNA CA AAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTNAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTTGGATCATGCTTCACATGTTCNGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA NGGATACGTT TTACATGCATTTNG ACCt ]
[+] EMBL AU063708 [ CTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GTG NCGACA AAGGTAAAGCTTTATAGGGCCNGGACGGTGTCGGAGCACGAG TTTGAAGGCCCCTGAAGATACCTACATTCTTNGAGGGGCCGCTGAAAC ]
[+] EMBL CA759961 [ TCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GCG GTG CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGAGCTGCCATTCTCATGCCGTGC TGGATCATGCTCCACATGTGC GGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTCAAAGTGGACTCGCTGCTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAACTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAAA ]
[+] EMBL OS0812A [ TCGTCGAGAGAGANANAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTNCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGGTN GT CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGNGCTGCCATTNTNATGCCGTGC TGGA ]
[+] EMBL OSRF [ gccgcCGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGAGCTGCCATTCTCATGCCGTGC TGGATCATGCTCCACATGTGC GGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTTGGAAAAAATTGACTTGNCCTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGG]
consensusID : consensus_14845#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[GGGGAGGGAAACGTTTTGACAAGCATTTTGTCCCCTAAGGGGGATTGGGTCATTCCCCCCCCCAAGGAGGAAGAACTTTAAAAGGGGGCTTTTTTTAAGGTTTTGGGGGCCCATTTGTTGATTTCAAAGGGGACTCCCTGTTCAGTTAGTTTTCGCTATCCAAAAAAAGGCCAAATCTTTGGATTAGTTTTTTGAGGGGGCCGGGTCATATGAGTTGGGCCAAAAATTGTGGGAGTCCTGTTCAGCATTTCAAAAGGGGTTTGTTCAATTCCCAGCAGGTCCAACTTCCAACGATGACATGTTATCAAAAGTTGGGGGGAAAGGGATTATTGGGGATCCCTTCCAGTAGGAAAAAATTGATTTGTCCTTTTTCCCCCCGGTTTTTTGCAAAATGAATCAAAAGTTCCGCCCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF312302 [GGGGAGGGAAACGTTTTGACAAGCATTTTGTCCCCTAAGGGGGATTGGGTCATTCCCCCCCCCAAGGAGGAAGAACTTTAAAAGGGGGCTTTTTTTAAGGTTTTGGGGGCCCATTTGTTGATTTCAAAGGGGACTCCCTGTTCAGTTAGTTTTCGCTATCCAAAAAAAGGCCAAATCTTTGGATTAGTTTTTTGAGGGGGCCGGGTCATATGAGTTGGGCCAAAAATTGTGGGAGTCCTGTTCAGCATTTCAAAAGGGGTTTGTTCAATTCCCAGCAGGTCCAACTTCCAACGATGACATGTTATCAAAAGTTGGGGGGAAAGGGATTATTGGGGATCCCTTCCAGTAGGAAAAAATTGATTTGTCCTTTTTCCCCCCGGTTTTTTGCAAAATGAATCAAAAGTTCCGCCCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14845#0 TACTTACCCTCCCTTCTGATCCCCTGTTTCCCCTGGTCATGGCGGCGAGATCTCCGTGTA 60
consensus_14845#1 ------------------------------------------------------------
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 GGAGTGAGATCGCCGCCTCCTCCTCATGGTGTTTCCTGGTGCGGCGCGCGTGAGAGCTCG 120
consensus_14845#1 ------------------------------------------------------------
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 GCCCGAGCCCGAGCCCTCTCGCTTTTGCCGTGCCGGATCTGATTCTGTCCGTGCTAGTGT 180
consensus_14845#1 ------------------------------------------------------------
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 TAGTGTCACGTTTTGGTGTAGACAGTAGACTCATGAAACGAGGAGAGGCTTTTTTGTAGG 240
consensus_14845#1 ------------------------------------------------------------
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 ATGGGTCAACTTTTAGGAACTTGTCCAAAGTTTAACAACTCTCAAGGATGAACTGGGAAT 300
consensus_14845#1 ------------------------------------------------------------
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 AGTGGCGCTGTTATACATTAGGAGTTGGTCTGCGAGAAATTTGGATGGGATTAGTTGCGG 360
consensus_14845#1 ------------------------------------------------------------
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 ATCTTCCATCAGCTAGTGGAGCTTAAAGATACTGATGTGTTGTCCGTACTGAAATGCACT 420
consensus_14845#1 ------------------------------------------------------------
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 TCTTTGCCTTGGCAAAACCCCAGTCTCCCCCATAAATTTAGTTTTGTTTGCTTAGCTTTA 480
consensus_14845#1 ------------------------------------------------TGGACTGAAGGA 12
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 CCAAATGCCATCAGCAT-ACATGGTGTAAAATCATATACTTTTGTAACGAACGAATTGTG 539
consensus_14845#1 GTAGAAACCATCTTTTCGACTCGGCTTGACCCAACCCAACCT---ACCTCGCGATCCCCC 69
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 TTTATTTGCATTTCAACTAGTGCTTTCTTCCTAATTTATCAGGACTATCGAGATGGCAAC 599
consensus_14845#1 CCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAAC 129
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 TGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAA 659
consensus_14845#1 TGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAA 189
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 GAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTC 719
consensus_14845#1 GAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTC 249
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 CAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGG 779
consensus_14845#1 CAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGG 309
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 TGTCGAGCACGAGTTTGAAGCCCCTGAAGATACCTACATTCTCGAGGCCGCTGAAACTGC 839
consensus_14845#1 TGTCGAGCACGAGTTTGAAGCCCCTGAAGATACCTACATTCTCGAGGCCGCTGAAACTGC 369
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 CGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGAT 899
consensus_14845#1 CGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGAT 429
consensus_14845#2 ------------------------------------------------------------
consensus_14845#0 GTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA 959
consensus_14845#1 GTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA 489
consensus_14845#2 -------------------------------------------------------GGGGA 5
** **
consensus_14845#0 GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAA 1019
consensus_14845#1 GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAA 549
consensus_14845#2 GGGAAACGTTTTGACAAGCATTTTGTCCCCTAAGGGGGATTGGGTCATTCCCCCCCCCAA 65
**** ***** ***** ****** ** ******** ****** ******* * *** ***
consensus_14845#0 GGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTC 1079
consensus_14845#1 GGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTC 609
consensus_14845#2 GGAGGAAGAACTTTAAAAGGGGGCTTTTTTTAAGGTTTTGGGGGCCCATTTGTTGATTTC 125
************ ** *** *** ****** * ** ** **** ****** *******
consensus_14845#0 AAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATT 1139
consensus_14845#1 AAAGTGGACTCGCTGCTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATT 669
consensus_14845#2 AAAGGGGACTCCCTGTTCAGTTAGTTTTCGCTATCCAAAAAAAGGCCAAATCTTTGGATT 185
**** ****** *** ************************** ***** ******* ***
consensus_14845#0 AGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAG 1199
consensus_14845#1 AGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAG 729
consensus_14845#2 AGTTTTTTGAGGGGGCCGGGTCATATGAGTTGGGCCAAAAATTGTGGGAGTCCTGTTCAG 245
*** ****** *** *** ************* * *** ****** * ************
consensus_14845#0 CATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTAT 1259
consensus_14845#1 CATTTCAAACTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTAT 789
consensus_14845#2 CATTTCAAAAGGGGTTTGTTCAATTCCCAGCAGGTCCAACTTCCAACGATGACATGTTAT 305
********* * ************* *********************************
consensus_14845#0 CAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAAAACTTGT 1319
consensus_14845#1 CAGAAGTTGTGTGTAAAGGTATTATTGTGGATCACTTCCAGTTGGAAAAAATTGACTTGN 849
consensus_14845#2 CAAAAGTTGGGGGGAAAGGGATTATTGGGGATCCCTTCCAGTAGGAAAAAATTGATTTGT 365
** ****** * * ** ** ******* ***** ******** ******** * ***
consensus_14845#0 CCTTTCTCCAAAAAATATTTTGCAAGATGAATCAGAAGT--------------------- 1358
consensus_14845#1 CCTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGG------------ 897
consensus_14845#2 CCTTTTTCCCCCCGGTTTTTTGCAAAATGAATCAAAAGTTCCGCCCTTGTAAAAAAAAAA 425
***** *** ** * ** * **
consensus_14845#0 --------------------------------------
consensus_14845#1 --------------------------------------
consensus_14845#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 463
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||