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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 2112 fasta sequence
[CCTTTTCCCTCTCTTCCTCCGCTTATTAAAAGGCGGCGTCCCTCCCCGTGGTGCTCGCCGCCGTATTCAAGCGGAGGAAGAGAGAGAGAGAGAGAGAATCAAGGCAGTAGTCGTCTTCCTCTCCTCTCGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGCCTCG----CCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGAGCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGCGCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCACCCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCCCGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTCCTTCACCGACGCCAACCTCGACTTCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGAGGACACCTACCTCCCTCCCGCCGTGCTGCGCGTCCCGCCCAACCCGTGCATGGACGAGGCCCGCAAGGAGGCCCGCACCGTCATGTTCGGCGCCATTGACCAGCTTCTTGAGAAGACGGGTGTGAAGCCCAAGGACATTGGTGTGGTTGTCGTCAATTGCAGCTTGTTCAACCCGACGCCGTCGCTGTCCGCCATGGTTGTGAACCACTACAAGCTGAGGGGGAATGTCATCAGCTACAACCTCGGCGGGATGGGGTGCAGTGCCGGCTTGCTGTCCGTCGATCTCGCCAAGGACTTGCTGCAGGTGCACCCAAACTCGTACGCGCTGGTGGTCAGCATGGAGAACATCACGCTCAATTGGTACTTTGGCAACAACCGGTCGATGCTCGTGTCGAATTGCCTGTTCCGGATGGGCGGCGCCGCCATCCTGCTGTCGAACAGGCGGTCCGACCGCCGGAGGTCCAAGTATGAGCTTGTGCACACCGTGCGCACGCACAAGGGCGCCAACG-ACAAGTGCTTTGGCTGTGTCACCCAGGAGGAAGACGAGATCGGCAAGATCGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGACGCGCTGAAGACGAACATCACCACCCTTGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT--GGAGTTGACT-GACT-GGCACATGG-AGCCATC-TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG-AAGCGGGACAGGATCTGGC-AGATTGC-ATTTGGATCTGGTTTCAAG-TG-CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG-CCTTGTTTGTCTCAAGAGTAGT-AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA-TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT-GCAA-TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA-G-GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTT-CATGTGACGTTTATTCATCGTTACCTGATTGTGATTGCCCTTGTAGCACTGTCACATTCTCATTAAATTTATCTCATTAAATT]
[+] EMBL AK101377 [CCTTTTCCCTCTCTTCCTCCGCTTATTAAAAGGCGGCGTCCCTCCCCGTGGTGCTCGCCGCCGTATTCAAGCGGAGGAAGAGAGAGAGAGAGAGAGAATCAAGGCAGTAGTCGTCTTCCTCTCCTCTCGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGCCTCGGTATCCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGAGCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGCGCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCACCCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCCCGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTCCTTCACCGACGCCAACCTCGACTTCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGAGGACACCTACCTCCCTCCCGCCGTGCTGCGCGTCCCGCCCAACCCGTGCATGGACGAGGCCCGCAAGGAGGCCCGCACCGTCATGTTCGGCGCCATTGACCAGCTTCTTGAGAAGACGGGTGTGAAGCCCAAGGACATTGGTGTGGTTGTCGTCAATTGCAGCTTGTTCAACCCGACGCCGTCGCTGTCCGCCATGGTTGTGAACCACTACAAGCTGAGGGGGAATGTCATCAGCTACAACCTCGGCGGGATGGGGTGCAGTGCCGGCTTGCTGTCCGTCGATCTCGCCAAGGACTTGCTGCAGGTGCACCCAAACTCGTACGCGCTGGTGGTCAGCATGGAGAACATCACGCTCAATTGGTACTTTGGCAACAACCGGTCGATGCTCGTGTCGAATTGCCTGTTCCGGATGGGCGGCGCCGCCATCCTGCTGTCGAACAGGCGGTCCGACCGCCGGAGGTCCAAGTATGAGCTTGTGCACACCGTGCGCACGCACAAGGGCGCCAACG ACAAGTGCTTTGGCTGTGTCACCCAGGAGGAAGACGAGATCGGCAAGATCGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGACGCGCTGAAGACGAACATCACCACCCTCGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAAAACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTT CATGTGACGTTTATTCATCGTTACCTGATTGTGATTGCCCTTGTAGCACTGTCACATTCTCATTAAATTTATCTCATTAAAT ]
[+] EMBL CB637965 [ GAGAGAGAGAGAGAATCAAGGCAGTAGTCGTCTTCCTCTCCTCTCGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGCCTCG CCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGAGCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGCGCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCACCCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCCCGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTCCTTCACCGACGCCAACCTCGACTTCCAGC ]
[+] EMBL CB648039 [ AGAATCCCGGCAGTAGTCGTCTTCCTCTCCTCTCGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGCCTCG CCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGAGCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGCGCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCACCCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCCCGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTCCTTCACCGACGCCAACCTCGACTTCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGAGGACACCTACCTCCCTCCCGCCGTGCTGCGCGTCCCGCCCAACCCGTGCATGGACGAGGCCCGCAAGGAGGCCCGCACCGTCATGTTCGGCGCCATTGACCAGCTTCTTGAGAAGACGGGTGTGAAGCCCAAGGACATTGGTGTGGTTGTCGTCAATTGCAGCTTGTTCAACCCGACGCCGTCGCTGTCCGCCCTGGTTGTGAACCACTACAAGCTGAGG ]
[+] EMBL CB650716 [ CGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGCCTCG CCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGAGCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGCGCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCACCCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCCCGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTCCTTCACCGACGCCAACCTCGACTTCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGAGGACACCTACCTCCCTCCCGCCGTGCTGCGCGTCCCGCCCAACCCGTGCATGGACGAGGCCCGCAAGGAGGCCCGCACCGTCATGTTCGGCGCCATTGACCAGCTTCTTGAGAAGACGGGTGTGAAGCCCAAGGACATTGGTGTGGTTGTCGTCAATTGCAGCTTGTTCAACCCGACGCCGTCGCTGTCCGCCATGGTTGTGAACCACTACAAGCTGAGGGGGAATGTCATCAGCTACAACCTCGGCGGGATGGGGTGCAGTGCCGGCTTGCTGTCCGTCGATCTCGCCAAG ]
[+] EMBL CA753655 [ CCGCCATCCTGCTGTCGAACAGGCGGTCCGACCGCCGGAGGTCCAAGTATGAGCTTGTGCACACCGTGCGCACGCACAAGGGCGCCAACG ACAAGTGCTTTGGCTGTGTCACCCAGGAGGAAGACGAGATCGGCAAGATTGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGACGCGCTGAAGACGAACATCACCACCCTCGGGCCGCTCGTGCTCCCATTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCGAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAG ]
[+] EMBL CB627416 [ aggCGCCATCCTGCTGTCCATCAAGAAGCCTGACCGCCGGAGGTCCAAGTATGAGCTTGTGCACACCGTGCGCACGCACAAGGGCGCCAACGCACAAGTGCTTTGGCTGTGTCACCCAGGAGGAAGACGAGATCGGCAAGATCGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGACGCGCTGAAGACGAACATCACCACCCTTGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAA ]
[-] EMBL CB627417 [ ATCGGCAAGATCGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGACGCGCTGAAGACGAACATCACCACCCTTGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAAGG GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTT CATGTGACGTTTA ]
[-] EMBL CB618410 [ GAGACGCGCTGAAGACGAACATCACCACCCTTGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA GNGGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATAAAGTCAGATTGGAGAAAACAAT ]
[-] EMBL CB650717 [ TGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTT CATGTGACGTTTATTCATCGTTGCCTGATTGTGATTGCCCTTGTAGCACTGTCACATTCTCATTAAATTTATCTCATTAAATT]
[-] EMBL CB627603 [ AGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAAATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCccagc ]
[+] EMBL OS1321635 [ TGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGNTCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATGCCCTTGTTTGTCTCAAGAGTAGTAAAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCANGGTTCTAAATCCAT ]
[+] EMBL BM419218 [ ACTTTGGGAGTTGACTGGACTGGGCACATGGAAGCCATCTTAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCACTTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTTGGCAACTTGTTCCAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACCNTTGGAGTCTT CATGTGACGTTTAaaaaa ]
[-] EMBL CB637966 [ T GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTTACATGTGA ]
[-] EMBL CB638345 [ ACATCGAGCAGCTCACTTTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGAAAAATCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTTACATGTGA ]
[+] EMBL AU102029 [ CCGANGCGAAGGGGAGGATCAGGAAAGCGGGACAGGATCTGGCAAGATTGCAATTTGGATCTGGTTTCAAGTTGCCAACAGCGCAGTCTGGAANGCNCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAAaa ]
consensusID : consensus_14855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 747 fasta sequence
[TCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTTGGAGTTGACTGACTGGCACATGGAGCCATCTAGGATGACCCTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACCCCGAGGCGAAGGGGAGGATCAGGAAGCGGGACAGGATCTGGCAGATTGCATTTGGATCTGGTTTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATCCCTTGTTTGTCTCAAGAGTAGTAAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCATTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTTGCAATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAACCAATTGGGGTCTTCATGTGCCGTTTAAAAAAAAAAAAAAAACAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT]
[-] EMBL CB648040 [TCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTTGGAGTTGACTGACTGGCACATGGAGCCATCTAGGATGACCCTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACCCCGAGGCGAAGGGGAGGATCAGGAAGCGGGACAGGATCTGGCAGATTGCATTTGGATCTGGTTTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATCCCTTGTTTGTCTCAAGAGTAGTAAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCATTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTTGCAATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAACCAATTGGGGTCTTCATGTGCCGTTTAAAAAAAAAAAAAAAACAAAAAAGGA ]
[-] EMBL BE040481 [ TTTGGATCTGGTTTCAAGTGCAACAGCCCAGTTTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAAAAAAACCCCTGGATGGATGAAATTGACAACTTCCCGGTTGAAGTTCCAAAAATATCAAAGGTTGGAAATGCATGACATGAAATCCCTTGTTTGTCTCAAAAGTAGTAAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCATTGGTAGGGCAGGAAGTTCATC TCAGGGTTCTAAACCCATTTGCAATTGTTCAAAAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAAAAAACTGGAGCTGATTCAATTAGGTAAAAAAAGGGTGTGTTTTTTTCACTTAGGGCTGTCTGAAAAAGCTGTATTTATTCAAATTGGAGAAAACAATTGGAGTCTTCATGTGACGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT]
consensusID : consensus_14855#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[GGCAACACATTGGAGCAGCTCACCTCTGTATGGACTGGCGTACACCGAGCGAAGGGGAGGATCAAGGAACCGGGACAGGATCTGCAAGATTGCATTTGGATCTGTTTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCGAACAGGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCCAAGATATCAAAGGTTGGAAATGCATGACATGAAATGCCTTGTTTGTCTCACAGAGTAGTAAAAAGTATGGTGGTTGAGTGGCACTTGTGCACTTGGCACTTGGTAGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTTGCACATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACCATTGGAGTCTTCATGTGACGTTTATTCATCGTTGCCTAAAAAAAAAA]
[+] EMBL BI809856 [GGCAACACATTGGAGCAGCTCACCTCTGTATGGACTGGCGTACACCGAGCGAAGGGGAGGATCAAGGAACCGGGACAGGATCTGCAAGATTGCATTTGGATCTGTTTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCGAACAGGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCCAAGATATCAAAGGTTGGAAATGCATGACATGAAATGCCTTGTTTGTCTCACAGAGTAGTAAAAAGTATGGTGGTTGAGTGGCACTTGTGCACTTGGCACTTGGTAGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTTGCACATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACCATTGGAGTCTTCATGTGACGTTTATTCATCGTTGCCTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14855#0 CCTTTTCCCTCTCTTCCTCCGCTTATTAAAAGGCGGCGTCCCTCCCCGTGGTGCTCGCCG 60
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 CCGTATTCAAGCGGAGGAAGAGAGAGAGAGAGAGAGAATCAAGGCAGTAGTCGTCTTCCT 120
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 CTCCTCTCGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGC 180
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 CTCGCCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGA 240
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 GCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAA 300
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 GCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGC 360
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 GCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCA 420
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 GCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCAC 480
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 CCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCC 540
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 CGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTC 600
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 CTTCACCGACGCCAACCTCGACTTCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGA 660
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 GGACACCTACCTCCCTCCCGCCGTGCTGCGCGTCCCGCCCAACCCGTGCATGGACGAGGC 720
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 CCGCAAGGAGGCCCGCACCGTCATGTTCGGCGCCATTGACCAGCTTCTTGAGAAGACGGG 780
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 TGTGAAGCCCAAGGACATTGGTGTGGTTGTCGTCAATTGCAGCTTGTTCAACCCGACGCC 840
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 GTCGCTGTCCGCCATGGTTGTGAACCACTACAAGCTGAGGGGGAATGTCATCAGCTACAA 900
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 CCTCGGCGGGATGGGGTGCAGTGCCGGCTTGCTGTCCGTCGATCTCGCCAAGGACTTGCT 960
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 GCAGGTGCACCCAAACTCGTACGCGCTGGTGGTCAGCATGGAGAACATCACGCTCAATTG 1020
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 GTACTTTGGCAACAACCGGTCGATGCTCGTGTCGAATTGCCTGTTCCGGATGGGCGGCGC 1080
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 CGCCATCCTGCTGTCGAACAGGCGGTCCGACCGCCGGAGGTCCAAGTATGAGCTTGTGCA 1140
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 CACCGTGCGCACGCACAAGGGCGCCAACGACAAGTGCTTTGGCTGTGTCACCCAGGAGGA 1200
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 AGACGAGATCGGCAAGATCGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGA 1260
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 CGCGCTGAAGACGAACATCACCACCCTTGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCT 1320
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 ------------------------------------------------------------
consensus_14855#0 GCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACAT 1380
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 --------------------------------TCCTCAAGATGAAGATCAAGCCATACAT 28
consensus_14855#0 TCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCT 1440
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 TCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCT 88
consensus_14855#0 GGATGAGCTGGAGAAGAACTTGGAGTTGACTGACTGGCACATGGAGCCATCTAGGATGAC 1500
consensus_14855#2 ------------------------------------------------------------
consensus_14855#1 GGATGAGCTGGAGAAGAACTTGGAGTTGACTGACTGGCACATGGAGCCATCTAGGATGAC 148
consensus_14855#0 ACTGTACCGGTTTGGCAACACATCG-AGCAGCTCACTCTGGTATGAGCTGGCGTACACCG 1559
consensus_14855#2 -------------GGCAACACATTGGAGCAGCTCACCTCTGTATGGACTGGCGTACACCG 47
consensus_14855#1 CCTGTACCGGTTTGGCAACACATCG-AGCAGCTCACTCTGGTATGAGCTGGCGTACCCCG 207
********** * ********** ***** ********* ***
consensus_14855#0 AGGCGAAGGGGAGGATCA-GGAAGCGGGACAGGATCTGGCAGATTGCATTTGGATCTGGT 1618
consensus_14855#2 AG-CGAAGGGGAGGATCAAGGAACCGGGACAGGATCTGCAAGATTGCATTTGGATCTG-T 105
consensus_14855#1 AGGCGAAGGGGAGGATCA-GGAAGCGGGACAGGATCTGGCAGATTGCATTTGGATCTGGT 266
** *************** **** ************** ****************** *
consensus_14855#0 TTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCAAACAG-TGAATCCAGCGAAGGAGAA 1677
consensus_14855#2 TTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCGAACAGGTGAACCCGGCGAAGGAGAA 165
consensus_14855#1 TTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCAAACAG-TGAATCCAGCGAAGGAGAA 325
********************************** ***** **** ** ***********
consensus_14855#0 GAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGT 1737
consensus_14855#2 GAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCCAAGATATCAAAGGT 225
consensus_14855#1 GAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGT 385
********************************************* **************
consensus_14855#0 TGGAAATGCATGACATGAAATGCCTTGTTTGTCTCA-AGAGTAGTAAAAAGTATGGTGGG 1796
consensus_14855#2 TGGAAATGCATGACATGAAATGCCTTGTTTGTCTCACAGAGTAGTAAAAAGTATGGTGG- 284
consensus_14855#1 TGGAAATGCATGACATGAAATCCCTTGTTTGTCTCA-AGAGTAGTAAAAAGTATGGTGGG 444
********************* ************** **********************
consensus_14855#0 TTGAGTGGCA-TTGTGCA-TTGGCATTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAA 1854
consensus_14855#2 TTGAGTGGCACTTGTGCACTTGGCACTTGGTAGGCAGGAAGTTCATCTTCAGGGTTCTAA 344
consensus_14855#1 TTGAGTGGCA-TTGTGCA-TTGGCATTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAA 502
********** ******* ****** * * ****************************
consensus_14855#0 ATCCATTTGCA-ATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAA 1913
consensus_14855#2 ATCCATTTGCACATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAA 404
consensus_14855#1 ATCCATTTGCA-ATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAA 561
*********** ************************************************
consensus_14855#0 CTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACT 1973
consensus_14855#2 CTTTAAAAAGAAA-CTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACT 463
consensus_14855#1 CTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACT 621
************* **********************************************
consensus_14855#0 TAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTTCATG 2033
consensus_14855#2 TAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACCATTGGAGTCTTCATG 523
consensus_14855#1 TAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAACCAATTGGGGTCTTCATG 681
****************************************** * ***** *********
consensus_14855#0 TGACGTTTATTCATCGTTACCTGATTGTGATTGCCCTTGTAGCACTGTCACATTCTCATT 2093
consensus_14855#2 TGACGTTTATTCATCGTTGCCTAAAAAAAAAA---------------------------- 555
consensus_14855#1 TGCCGTTTAAAAAAAAAAAAAAAACAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAA 741
** ****** * * *
consensus_14855#0 AAATTTATCTCATTAAATT 2112
consensus_14855#2 -------------------
consensus_14855#1 AAAACT------------- 747
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||