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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1043 fasta sequence
[GACACTGACATGGACTGAGGAGTTGAAACCCCGAAACCCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG-G-CCGTGGGTTCCTGGA-C-AAGGAACCTTTCC-CTCTTACCAGCAATGATCTCA-TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT-CAGTTGGCCCA-CA-CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG-CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAATCTGTTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF322118 [GACACTGACATGGACTGAGGAGTTGAAACCCCGAAACCCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAGGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGA ]
[+] EMBL AK058490 [ CCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG G CCGTGGGTTCCTGGA C AAGGAACCTTTCC CTCTTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGATTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAATCTG ]
[+] EMBL AK101416 [ CCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG G CCGTGGGTTCCTGGA C AAGGAACCTTTCC CTCTTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAAT ]
[+] EMBL CF332663 [ TCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG GCCCGTGGGTTCCTGGA C AAGGAACCTTTCC CTCTTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCA ]
[+] EMBL CF331930 [ TCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATT ]
[+] EMBL AU082604 [ GCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAA NTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGGATGTNAAGGATCTTATTTACAAGAAGG G CCGTNGGTTCCTNGG C AAGGAACCTTTCC CTCTTACCAGCAATG TCTTATTTAAGAAAGGTTTNGGNG ATATTGGANCAaa ]
[-] EMBL CF331931 [ ATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG G CCGTGGGTTCCTGGA C AAGGAACCTTTCC CTCTTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAaaaaaaaa ]
[+] EMBL AU030288 [ TCCTCAAGGCCNCTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATNTGANGGATCTTATTTACAAGAAGG G CCGTGGGTTCCTGGA C AAGGANCCTTTCC CTNTTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGNGGTTGCNGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGNGTGTTCATGCTCAGATTATGAAATAGNNGAATCTGTTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL CF332664 [ TTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG G CCGTGGGTTCCTGGA C AAGGAACCTTTCCTCT TTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCACATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCCCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAaaaaaaaaa ]
[+] EMBL BM038069 [ CTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGGCC CCGTGGGTTCCTGGACC AAGGAACCTTTCC CTCTTACCA CCATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCATCCAGTTGGCCCACCACCTTCAGAGAAGCTTCAAATTTTCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTGCCAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAAaaaaaaaa ]
[+] EMBL AU068412 [ tagggcCCCAAATTTGAAGAATGTGAAGGA CTTA TTACAAGAAGG G CCGT GGNTCCTGGA CAAAGGAACCTTTCC CCNCTACCAGCAATGANCTCA TTGAGAAGGCTCTGGNAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAATCTGTTTTCCTAAAAAAAA ]
[+] EMBL AU031339 [ TTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAATCTGTTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence
[TGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGGGCCGTGGGTTCCTGGACAAGGAACCTTTCCCTCTTACCAGCAATGATCTCATTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCATCAGTTGGCCCACACTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTGCAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGGTCATGCTCAAAAATATATATTTTTGTTTAAAATTTTTGTATTTAATGATGGTGCGGTTTTTGATTTACTGAATACTTGGGGGGGGGCCCGGGCCCAAATGGGCCTTTGTTGGTGTTTTACTCCCCTGTATGGTCTGTTGGTCTAGCGGATGCGTGGAAACCTGTGTGGCCCCGTTTTGTGTTTTGTTTTCTTCCTTTTCTCCTTTGCGGGTAGTCCATCCCCCCCCCCCCGCAACCTGTTTTCTGCGTTATTGATATTGTATTCATTGTGTCTTTTATCTGCTACCATCTCGTGTCTGTTACTTCCTAATCTTCGACTTACCTCTTTTTTACGTCTCCTCCCGATATTCTTTTTTCTCTTCAGCCTCTTTCTTGTTTCTGTCTCCGT]
[+] EMBL BE039719 [TGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGGGCCGTGGGTTCCTGGACAAGGAACCTTTCCCTCTTACCAGCAATGATCTCATTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCATCAGTTGGCCCACACTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTGCAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGGTCATGCTCAAAAATATATATTTTTGTTTAAAATTTTTGTATTTAATGATGGTGCGGTTTTTGATTTACTGAATACTTGGGGGGGGGCCCGGGCCCAAATGGGCCTTTGTTGGTGTTTTACTCCCCTGTATGGTCTGTTGGTCTAGCGGATGCGTGGAAACCTGTGTGGCCCCGTTTTGTGTTTTGTTTTCTTCCTTTTCTCCTTTGCGGGTAGTCCATCCCCCCCCCCCCGCAACCTGTTTTCTGCGTTATTGATATTGTATTCATTGTGTCTTTTATCTGCTACCATCTCGTGTCTGTTACTTCCTAATCTTCGACTTACCTCTTTTTTACGTCTCCTCCCGATATTCTTTTTTCTCTTCAGCCTCTTTCTTGTTTCTGTCTCCGT]
consensusID : consensus_14856#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 948 fasta sequence
[CCAACGAATCTCACCTCTCGCGGACTCGCCCCGCTCTGTCCTTGCTTCCCTCCTCCGCCGCGGTGTTCAGGGCTTCAGGCGGCGGAGGAGGCGGCGGGNTGGATGGCGCCGGTGTTCGAGAGGCTGACGGGGATCCGAGCACTCGCCGACTCCGCCCGCTTCAAGGCGTGGTTCCTCGACCAGATTGGTGTTCTTCACCATGGGAATATGCCTTACCTGGTGCCATCCTTGCATTGGGAAAGGGGCGAAGATGGTTATCATTAGCAATTCGTTAAGGAGGTCGACTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTCACAACTCGTCTTGTTTCCTCTCGGGGCCATCACTAGCGGGGAACTCACACATCAGTATCTTCACAAGAACTAAGCTTCTAGCTGTCGGTATCTTCTGCTAACAGAAGCTGCANGTGGGGTCTCCTTGAGGAATGGTGGGGTGCAATAGATATTATGATCAGAATTAAAGTTGGCTTACCAGCAGTGATCTATTTAAGAAGGCTCTAGGAGAACATGGCATCATATGTTTGGAAGATGAGCATGAAATCGCAACAGTCGGTCCACACTTCAGACAAGCTTCAAACTTCCTCATGCCCTTCAAGCTCAAGTGTCAAGAAGGAGGTTACAGATGAAGAAGAAACCCTACAAGGATGGTGGATTGGTGGTGATTTGGGAGACCGTGAAGATAAAATCAACGAATTAATTGATAAGTTAAATTAATGCAGAACATGCCCCAAATCGCCATTTGTGTGCAAGGGATGAATCCATTACCTTGTTAGCTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCGTACCTGAATGTTTGGGATCAGATTATGAAATAGCATAATCTGTTTTCAAACCTGCCTTCTTGTTCTTAGCTTTCAAGTGTTGTGCCGAAACTAGCTGCTGAGAAAAA]
[+] EMBL CF314709 [CCAACGAATCTCACCTCTCGCGGACTCGCCCCGCTCTGTCCTTGCTTCCCTCCTCCGCCGCGGTGTTCAGGGCTTCAGGCGGCGGAGGAGGCGGCGGGNTGGATGGCGCCGGTGTTCGAGAGGCTGACGGGGATCCGAGCACTCGCCGACTCCGCCCGCTTCAAGGCGTGGTTCCTCGACCAGATTGGTGTTCTTCACCATGGGAATATGCCTTACCTGGTGCCATCCTTGCATTGGGAAAGGGGCGAAGATGGTTATCATTAGCAATTCGTTAAGGAGGTCGACTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTCACAACTCGTCTTGTTTCCTCTCGGGGCCATCACTAGCGGGGAACTCACACATCAGTATCTTCACAAGAACTAAGCTTCTAGCTGTCGGTATCTTCTGCTAACAGAAGCTGCANGTGGGGTCTCCTTGAGGAATGGTGGGGTGCAATAGATATTATGATCAGAATTAAAGTTGGCTTACCAGCAGTGATCTATTTAAGAAGGCTCTAGGAGAACAT ]
[-] EMBL CF314710 [ ACTAGCGGGGAACTCACACATCAGTATCTTCACAAGAACTAAGCTTCTAGCTGTCGGTATCTTCTGCTAACAGAAGCTGCA GTGGGGTCTCCTTGAGGAAT GTGGGGTGCAATAGATATTATGATCAGAATTAAAGTTGGCTTACCAGCAGTGATCTATTTAAGAAGGCTCTAGGAGAACATGGCATCATATGTTTGGAAGATGAGCATGAAATCGCAACAGTCGGTCCACACTTCAGACAAGCTTCAAACTTCCTCATGCCCTTCAAGCTCAAGTGTCAAGAAGGAGGTTACAGATGAAGAAGAAACCCTACAAGGATGGTGGATTGGTGGTGATTTGGGAGACCGTGAAGATAAAATCAACGAATTAATTGATAAGTTAAATTAATGCAGAACATGCCCCAAATCGCCATTTGTGTGCAAGGGATGAATCCATTACCTTGTTAGCTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCGTACCTGAATGTTTGGGATCAGATTATGAAATAGCATAATCTGTTTTCAAACCTGCCTTCTTGTTCTTAGCTTTCAAGTGTTGTGCCGAAACTAGCTGCTGAGAAAAA]
consensusID : consensus_14856#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence
[CGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGNGCGAANTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGANGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGANCCGCCTCAAGGTCCGCAAGCTTCCCCCCGCCGAGANCCTCAACTTNCAAGCTCGTCTTTCGCGATTCGATCCTTGGCACAATGGACTTNCATCCACACATGAGGAAGATTTTGCGAACTTGCGGCTGACGANGTTCTNACCGGCGTGTTCCTCAAGGCACTTACGTAATATGAGAGGTTCTTGTTGTGAGCGTTATAATTATGGGTTCCAATTTAAAAATTTAAGGTTTTTTTAAAAAGGCCTGGGTCTTNAAAAGACT]
[+] EMBL AU065661 [CGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGNGCGAANTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGANGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGANCCGCCTCAAGGTCCGCAAGCTTCCCCCCGCCGAGANCCTCAACTTNCAAGCTCGTCTTTCGCGATTCGATCCTTGGCACAATGGACTTNCATCCACACATGAGGAAGATTTTGCGAACTTGCGGCTGACGANGTTCTNACCGGCGTGTTCCTCAAGGCACTTACGTAATATGAGAGGTTCTTGTTGTGAGCGTTATAATTATGGGTTCCAATTTAAAAATTTAAGGTTTTTTTAAAAAGGCCTGGGTCTTNAAAAGACT]
consensusID : consensus_14856#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence
[TTTNTTTGGTGGAGAAAGANNATACTTGCTAGCTGTTTCTNATGGTTTGGTAAGGTACACTGNAACATCACCATCTGNACTTTACTGANAACAGGCTCTANGAGAACATGGNATCATATGTTNGGAAGATGAGCATGAAATCGCANCAGGCGGNCCACACTTGAGACAAGCTTCANACTTCCTNATGCCCTTNAAGCTNAAGTGNCAAGAAGGAGGCTACAGATGAAGAANAAACCCTACAAGGATGGNGGATTGNTGGTGATTTGGGAGACCGCGAGAGATAAAATNAACGAANTAATTGATAATGNTAAATTATATGCATGAACATGCCCCAAATCGCCATTTGTGNGCAAGGGNTGAATCCATTACCTTGCTAGCTTTGNAATAGNCCTATNCGATTGTACCTTTATTTCTGANAGCGTACCTGAATGTTTGNGATCAGATTATGAANTANCATAATGTGGNNTTCCAGNNGCTGGACTTCACNAGGCCCCAT]
[+] EMBL CB096558 [TTTNTTTGGTGGAGAAAGANNATACTTGCTAGCTGTTTCTNATGGTTTGGTAAGGTACACTGNAACATCACCATCTGNACTTTACTGANAACAGGCTCTANGAGAACATGGNATCATATGTTNGGAAGATGAGCATGAAATCGCANCAGGCGGNCCACACTTGAGACAAGCTTCANACTTCCTNATGCCCTTNAAGCTNAAGTGNCAAGAAGGAGGCTACAGATGAAGAANAAACCCTACAAGGATGGNGGATTGNTGGTGATTTGGGAGACCGCGAGAGATAAAATNAACGAANTAATTGATAATGNTAAATTATATGCATGAACATGCCCCAAATCGCCATTTGTGNGCAAGGGNTGAATCCATTACCTTGCTAGCTTTGNAATAGNCCTATNCGATTGTACCTTTATTTCTGANAGCGTACCTGAATGTTTGNGATCAGATTATGAANTANCATAATGTGGNNTTCCAGNNGCTGGACTTCACNAGGCCCCAT]
consensusID : consensus_14856#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence
[CATAACGGCATGACAGTGTCTTTTTTTTTTTTTTTATTTCATAATCTGAGCATGAACACTCTATTAAGCTTTCAGAAATAAAGGTACAATCGGCTAGGCTATTACAAAACTGACAAGGTATAACG]
[+] EMBL CF322119 [CATAACGGCATGACAGTGTCTTTTTTTTTTTTTTTATTTCATAATCTGAGCATGAACACTCTATTAAGCTTTCAGAAATAAAGGTACAATCGGCTAGGCTATTACAAAACTGACAAGGTATAACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14856#0 ------------------------------------------------------------
consensus_14856#3 ------------------------------------------------------------
consensus_14856#1 ------------------------------------------------------------
consensus_14856#2 CCAACGAATCTCACCTCTCGCGGACTCGCCCCGCTCTGTCCTTGCTTCCCTCCTCCGCCG 60
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 ------------------------------------------------------------
consensus_14856#3 ------------------------------------------------------------
consensus_14856#1 ------------------------------------------------------------
consensus_14856#2 CGGTGTTCAGGGCTTCAGGCGGCGGAGGAGGCGGCGGGNTGGATGGCGCCGGTGTTCGAG 120
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 ------------------------------------------------------------
consensus_14856#3 ------------------------------------------------------------
consensus_14856#1 ------------------------------------------------------------
consensus_14856#2 AGGCTGACGGGGATCCGAGCACTCGCCGACTCCGCCCGCTTCAAGGCGTGGTTCCTCGAC 180
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 ------------------------------------------------------------
consensus_14856#3 ------------------------------------------------------------
consensus_14856#1 ------------------------------------------------------------
consensus_14856#2 CAGATTGGTGTTCTTCACCATGGGAATATGCCTTACCTGGTGCCATCCTTGCATTGGGAA 240
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 ---------------------------------GACACTGACATGGACTGAGGAGTTGAA 27
consensus_14856#3 ------------------------------------------------------------
consensus_14856#1 --------------------------------------------------TGGACTTGCA 10
consensus_14856#2 AGGGGCGAAGATGGTTATCATTAGCAATTCGTTAAGGAGGTCGACTGTAACCATGGAGAA 300
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 ACCCCGAAACCCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCG-TCGTCCAGGGCGAAG 86
consensus_14856#3 --------------------CGCGTCGTTCCGCCGCCGCCGCCG-TCGTCCAGNGCGAAN 39
consensus_14856#1 TCCACACATGAGGAGGATTTTGCG-CAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGT 69
consensus_14856#2 GCTAGAGAGCCTTGGTTTCACAACTCGTCTTGTTTCCTCTCGGGGCCATCACTAGCGGGG 360
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 CTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACG 146
consensus_14856#3 -TTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGANGGGACGCAGCAGCTGCCGTACG 98
consensus_14856#1 TCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTT-TATCACT 128
consensus_14856#2 AACTCACA--CATCAGTATCTTCACAAGAACTAAGCTTCTAGCTGTCGGTATCTTCTGCT 418
consensus_14856#4 -----------------------------------------------TTTNTTTGGTGGA 13
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 TGCGGGAGACGGTGCT-GAAGAA-GCGGAAGGTG--------AACGAGGACTGGGCGGTC 196
consensus_14856#3 TGCGGGAGACGGTGCT-GAAGAA-GCGGAAGGTG--------AACGAGGACTGGGCGGTC 148
consensus_14856#1 TATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGGGCCGTGGGTTC 188
consensus_14856#2 AACAGAAGCTGCANGTGGGGTCTCCTTGA-GGAATGGT----GGGGTGCAATAGA-TATT 472
consensus_14856#4 GAAAGANNATACTTGCTAGCTGTTTCTNATGGTTTGGT----AAGGTACACTGNAACATC 69
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 AAGAACCGGGAGCGGAAGGCGGCCA--AGAGGCAGCGCCGCCGCGACGAC----GGCAAG 250
consensus_14856#3 AAGAACCGGGAGCGGAAGGCGGCCA--AGAGGCAGCGCCGCCGCGACGAC----GGCAAG 202
consensus_14856#1 CTGGACAAGGAACCTTTCCCTCTTACCAGCAATGATCTCATTGAGAAGGCTCTGGGAGAA 248
consensus_14856#2 ATG-ATCAGAATTAAAGTTGGCTTACCAGCAGTGATCTATTTAAGAAGGCTCTAGGAGAA 531
consensus_14856#4 ACC-ATCTGNACT---------TTACTGANAAC-------------AGGCTCTANGAGAA 106
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 GGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCG-ACTT 309
consensus_14856#3 GGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCG-ACTT 261
consensus_14856#1 TATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATC-GCATCAGTTGGCCCACACTT 307
consensus_14856#2 CATGGCATCATATGTTTGGAAGAT---GAGCATGAAATC-GCAACAGTCGGTCCACACTT 587
consensus_14856#4 CATGGNATCATATGTTNGGAAGAT---GAGCATGAAATC-GCANCAGGCGGNCCACACTT 162
consensus_14856#5 ------------------------------CATAACGGC-ATGACAGTGTCTTTTTTTTT 29
* * ** **
consensus_14856#0 CGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGAC----CCTCA 365
consensus_14856#3 CGTCCGGATGAAGANCCGCCTCAAGGTCCGCAAGCTTCCCCCCGCCGAGAN----CCTCA 317
consensus_14856#1 CAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCA 367
consensus_14856#2 CAGACAAGCTTCAAACTTCCTCATGCCCTTCAAGCTCAAGTGTCAAGAAGG-AGGTTACA 646
consensus_14856#4 GAGACAAGCTTCANACTTCCTNATGCCCTTNAAGCTNAAGTGNCAAGAAGG-AGGCTACA 221
consensus_14856#5 TTTTTTATTTCATAATCTGAGCATGAACACTCTA-TTAAGCTTTCAGAAATAAAGGTACA 88
* * * * ** **
consensus_14856#0 ACT-CCAAGCTCGTCTT-CGCGATTCGC-----ATCCCTGGCACAATGGACTTGCA-TCC 417
consensus_14856#3 ACTTNCAAGCTCGTCTTTCGCGATTCG------ATCCTTGGCACAATGGACTTNCA-TCC 370
consensus_14856#1 GATGAAGAAGAAACCCTTCAAGGATGG--------TGGTGACTCAGGGAACCGCGA-AGA 418
consensus_14856#2 GATGAAGAAGAAACCCTACAAGGATGGTGGATTGGTGGTGATTTGGGAGACCGTGA-AGA 705
consensus_14856#4 GATGAAGAANAAACCCTACAAGGATGGNGGATTGNTGGTGATTTGGGAGACCGCGAGAGA 281
consensus_14856#5 ATCGGCTAGGCTAT--TACAAAACTGAC------AAGGTATAACG--------------- 125
* * * * *
consensus_14856#0 ACACATGAGGAGGATTTTGCGCAAGCTGCGGCTG-ACGCA-GGTCCT-CACCGGCGTGTT 474
consensus_14856#3 ACACATGAGGAAGATTTTGCG-AACTTGCGGCTG-ACG-A-NGTTCT-NACCGGCGTGTT 425
consensus_14856#1 TAAAATCAATGAATTAATTGAGAAGTTG-AATTA-GTGCA-GAACCTATGCCCAGTCGTA 475
consensus_14856#2 TAAAATCAACGAATTAATTGATAA-GTTAAATTA-ATGCA-GAACATGCCCCAAATCGCC 762
consensus_14856#4 TAAAATNAACGAANTAATTGATAATGNTAAATTATATGCATGAACATGCCCCAAATCGCC 341
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 CCTCAAG-GCCACTGACGCTACTATGAAGAGGCTTCTT-GTTGTGGAGCCGTTTATCACT 532
consensus_14856#3 CCTCAAG-GC-ACTTACG-TAATATGAGAGG--TTCTT-GTTGTGAG--CGTT--ATAAT 475
consensus_14856#1 ATTCATGTGCAAGGGATG--GATCCGTTATACCTTGTCAGTTTTGTAATAGCC---TAGC 530
consensus_14856#2 ATTTGTGTGCAAGGGATG--AATCCATTACC--TTGTTAGCTTTGTAATAGCC---TAGC 815
consensus_14856#4 ATTTGTGNGCAAGGGNTG--AATCCATTACC--TTGCTAGCTTTGNAATAGNCC--TATN 395
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 TATGGGTTCCCAAATTTG-AAGAATGTGA--AGGATCTTATTTACAAGAAGGGCCGTGGG 589
consensus_14856#3 TATGGGTTCC--AATTT--AAAAATTTAA--GG-----TTTTTTTAAAAAGGCC--TGGG 522
consensus_14856#1 CGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGGTCATGCTCAAAAATATATATTTT 590
consensus_14856#2 CGATTGTACCTTTATTTCTGAAAGCGTACCTGA------ATGTTTGGGATCAGAT-TATG 868
consensus_14856#4 CGATTGTACCTTTATTTCTGANAGCGTACCTGA------ATGTTTGNGATCAGAT-TATG 448
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 TTCCTGGACAAGGAACCTTTCCCTCTTACCAGCAATGATCTCATTGAGAAGGCTCTGGGA 649
consensus_14856#3 TCTTNAAAAGACT----------------------------------------------- 535
consensus_14856#1 TGTTTAAAATTTTTGTATTTAATGATGGTGCGGTTTTTGATTTACTGAATACTTGGGGGG 650
consensus_14856#2 AAATAGCATAATCTGTTTTCAAACCTGCCTTCTTGTTCTTAGCTTTCAAGTGTTGTGCCG 928
consensus_14856#4 AANTANCATAATGTGGNNTTCCAGNNGCTGGACT-TCACNAGGCCCCAT----------- 496
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 GAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCATCAGTTGGCCCACAC 709
consensus_14856#3 ------------------------------------------------------------
consensus_14856#1 GGGCCCGGGCCCAAATGGGCCTTTGTTGGTGTTTTACTCCCCTGTATGGTCTGTTGGTCT 710
consensus_14856#2 AAACTAGCTGCTGAGAAAAA---------------------------------------- 948
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 TTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTG 769
consensus_14856#3 ------------------------------------------------------------
consensus_14856#1 AGCGGATGCGTGGAAACCTGTGTGGCCCCGTTTTGTGTTTTGTTTTCTTCCTTTTCTCCT 770
consensus_14856#2 ------------------------------------------------------------
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 CAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATC 829
consensus_14856#3 ------------------------------------------------------------
consensus_14856#1 TTGCGGGTAGTCCATCCCCCCCCCCCCGCAACCTGTTTTCTGCGTTATTGATATTGTATT 830
consensus_14856#2 ------------------------------------------------------------
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 AATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTGC 889
consensus_14856#3 ------------------------------------------------------------
consensus_14856#1 CATTGTGTCTTTTATCTGCTACCATCTCGTGTCTGTTACTTCCTAATCTTCGACTTACCT 890
consensus_14856#2 ------------------------------------------------------------
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 AAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTAT 949
consensus_14856#3 ------------------------------------------------------------
consensus_14856#1 CTTTTTTACGTCTCCTCCCGATATTCTTTTTTCTCTTCAGCCTCTTTCTTGTTTCTGTCT 950
consensus_14856#2 ------------------------------------------------------------
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 TTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAATCTGTTTTCCT 1009
consensus_14856#3 ------------------------------------------------------------
consensus_14856#1 CCGT-------------------------------------------------------- 954
consensus_14856#2 ------------------------------------------------------------
consensus_14856#4 ------------------------------------------------------------
consensus_14856#5 ------------------------------------------------------------
consensus_14856#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1043
consensus_14856#3 ----------------------------------
consensus_14856#1 ----------------------------------
consensus_14856#2 ----------------------------------
consensus_14856#4 ----------------------------------
consensus_14856#5 ----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||