These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1043 fasta sequence [GACACTGACATGGACTGAGGAGTTGAAACCCCGAAACCCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG-G-CCGTGGGTTCCTGGA-C-AAGGAACCTTTCC-CTCTTACCAGCAATGATCTCA-TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT-CAGTTGGCCCA-CA-CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG-CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAATCTGTTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF322118 [GACACTGACATGGACTGAGGAGTTGAAACCCCGAAACCCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAGGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGA ] [+] EMBL AK058490 [ CCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG G CCGTGGGTTCCTGGA C AAGGAACCTTTCC CTCTTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGATTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAATCTG ] [+] EMBL AK101416 [ CCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG G CCGTGGGTTCCTGGA C AAGGAACCTTTCC CTCTTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAAT ] [+] EMBL CF332663 [ TCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG GCCCGTGGGTTCCTGGA C AAGGAACCTTTCC CTCTTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCA ] [+] EMBL CF331930 [ TCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATT ] [+] EMBL AU082604 [ GCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAA NTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGGATGTNAAGGATCTTATTTACAAGAAGG G CCGTNGGTTCCTNGG C AAGGAACCTTTCC CTCTTACCAGCAATG TCTTATTTAAGAAAGGTTTNGGNG ATATTGGANCAaa ] [-] EMBL CF331931 [ ATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG G CCGTGGGTTCCTGGA C AAGGAACCTTTCC CTCTTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAaaaaaaaa ] [+] EMBL AU030288 [ TCCTCAAGGCCNCTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATNTGANGGATCTTATTTACAAGAAGG G CCGTGGGTTCCTGGA C AAGGANCCTTTCC CTNTTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGNGGTTGCNGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGNGTGTTCATGCTCAGATTATGAAATAGNNGAATCTGTTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [-] EMBL CF332664 [ TTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGG G CCGTGGGTTCCTGGA C AAGGAACCTTTCCTCT TTACCAGCAATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCACATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCCCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAaaaaaaaaa ] [+] EMBL BM038069 [ CTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGGCC CCGTGGGTTCCTGGACC AAGGAACCTTTCC CTCTTACCA CCATGATCTCA TTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCATCCAGTTGGCCCACCACCTTCAGAGAAGCTTCAAATTTTCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTGCCAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAAaaaaaaaa ] [+] EMBL AU068412 [ tagggcCCCAAATTTGAAGAATGTGAAGGA CTTA TTACAAGAAGG G CCGT GGNTCCTGGA CAAAGGAACCTTTCC CCNCTACCAGCAATGANCTCA TTGAGAAGGCTCTGGNAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCAT CAGTTGGCCCA CA CTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAATCTGTTTTCCTAAAAAAAA ] [+] EMBL AU031339 [ TTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTG CAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAATCTGTTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence [TGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGGGCCGTGGGTTCCTGGACAAGGAACCTTTCCCTCTTACCAGCAATGATCTCATTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCATCAGTTGGCCCACACTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTGCAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGGTCATGCTCAAAAATATATATTTTTGTTTAAAATTTTTGTATTTAATGATGGTGCGGTTTTTGATTTACTGAATACTTGGGGGGGGGCCCGGGCCCAAATGGGCCTTTGTTGGTGTTTTACTCCCCTGTATGGTCTGTTGGTCTAGCGGATGCGTGGAAACCTGTGTGGCCCCGTTTTGTGTTTTGTTTTCTTCCTTTTCTCCTTTGCGGGTAGTCCATCCCCCCCCCCCCGCAACCTGTTTTCTGCGTTATTGATATTGTATTCATTGTGTCTTTTATCTGCTACCATCTCGTGTCTGTTACTTCCTAATCTTCGACTTACCTCTTTTTTACGTCTCCTCCCGATATTCTTTTTTCTCTTCAGCCTCTTTCTTGTTTCTGTCTCCGT] [+] EMBL BE039719 [TGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGGGCCGTGGGTTCCTGGACAAGGAACCTTTCCCTCTTACCAGCAATGATCTCATTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCATCAGTTGGCCCACACTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTGCAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGGTCATGCTCAAAAATATATATTTTTGTTTAAAATTTTTGTATTTAATGATGGTGCGGTTTTTGATTTACTGAATACTTGGGGGGGGGCCCGGGCCCAAATGGGCCTTTGTTGGTGTTTTACTCCCCTGTATGGTCTGTTGGTCTAGCGGATGCGTGGAAACCTGTGTGGCCCCGTTTTGTGTTTTGTTTTCTTCCTTTTCTCCTTTGCGGGTAGTCCATCCCCCCCCCCCCGCAACCTGTTTTCTGCGTTATTGATATTGTATTCATTGTGTCTTTTATCTGCTACCATCTCGTGTCTGTTACTTCCTAATCTTCGACTTACCTCTTTTTTACGTCTCCTCCCGATATTCTTTTTTCTCTTCAGCCTCTTTCTTGTTTCTGTCTCCGT] consensusID : consensus_14856#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 948 fasta sequence [CCAACGAATCTCACCTCTCGCGGACTCGCCCCGCTCTGTCCTTGCTTCCCTCCTCCGCCGCGGTGTTCAGGGCTTCAGGCGGCGGAGGAGGCGGCGGGNTGGATGGCGCCGGTGTTCGAGAGGCTGACGGGGATCCGAGCACTCGCCGACTCCGCCCGCTTCAAGGCGTGGTTCCTCGACCAGATTGGTGTTCTTCACCATGGGAATATGCCTTACCTGGTGCCATCCTTGCATTGGGAAAGGGGCGAAGATGGTTATCATTAGCAATTCGTTAAGGAGGTCGACTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTCACAACTCGTCTTGTTTCCTCTCGGGGCCATCACTAGCGGGGAACTCACACATCAGTATCTTCACAAGAACTAAGCTTCTAGCTGTCGGTATCTTCTGCTAACAGAAGCTGCANGTGGGGTCTCCTTGAGGAATGGTGGGGTGCAATAGATATTATGATCAGAATTAAAGTTGGCTTACCAGCAGTGATCTATTTAAGAAGGCTCTAGGAGAACATGGCATCATATGTTTGGAAGATGAGCATGAAATCGCAACAGTCGGTCCACACTTCAGACAAGCTTCAAACTTCCTCATGCCCTTCAAGCTCAAGTGTCAAGAAGGAGGTTACAGATGAAGAAGAAACCCTACAAGGATGGTGGATTGGTGGTGATTTGGGAGACCGTGAAGATAAAATCAACGAATTAATTGATAAGTTAAATTAATGCAGAACATGCCCCAAATCGCCATTTGTGTGCAAGGGATGAATCCATTACCTTGTTAGCTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCGTACCTGAATGTTTGGGATCAGATTATGAAATAGCATAATCTGTTTTCAAACCTGCCTTCTTGTTCTTAGCTTTCAAGTGTTGTGCCGAAACTAGCTGCTGAGAAAAA] [+] EMBL CF314709 [CCAACGAATCTCACCTCTCGCGGACTCGCCCCGCTCTGTCCTTGCTTCCCTCCTCCGCCGCGGTGTTCAGGGCTTCAGGCGGCGGAGGAGGCGGCGGGNTGGATGGCGCCGGTGTTCGAGAGGCTGACGGGGATCCGAGCACTCGCCGACTCCGCCCGCTTCAAGGCGTGGTTCCTCGACCAGATTGGTGTTCTTCACCATGGGAATATGCCTTACCTGGTGCCATCCTTGCATTGGGAAAGGGGCGAAGATGGTTATCATTAGCAATTCGTTAAGGAGGTCGACTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTCACAACTCGTCTTGTTTCCTCTCGGGGCCATCACTAGCGGGGAACTCACACATCAGTATCTTCACAAGAACTAAGCTTCTAGCTGTCGGTATCTTCTGCTAACAGAAGCTGCANGTGGGGTCTCCTTGAGGAATGGTGGGGTGCAATAGATATTATGATCAGAATTAAAGTTGGCTTACCAGCAGTGATCTATTTAAGAAGGCTCTAGGAGAACAT ] [-] EMBL CF314710 [ ACTAGCGGGGAACTCACACATCAGTATCTTCACAAGAACTAAGCTTCTAGCTGTCGGTATCTTCTGCTAACAGAAGCTGCA GTGGGGTCTCCTTGAGGAAT GTGGGGTGCAATAGATATTATGATCAGAATTAAAGTTGGCTTACCAGCAGTGATCTATTTAAGAAGGCTCTAGGAGAACATGGCATCATATGTTTGGAAGATGAGCATGAAATCGCAACAGTCGGTCCACACTTCAGACAAGCTTCAAACTTCCTCATGCCCTTCAAGCTCAAGTGTCAAGAAGGAGGTTACAGATGAAGAAGAAACCCTACAAGGATGGTGGATTGGTGGTGATTTGGGAGACCGTGAAGATAAAATCAACGAATTAATTGATAAGTTAAATTAATGCAGAACATGCCCCAAATCGCCATTTGTGTGCAAGGGATGAATCCATTACCTTGTTAGCTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCGTACCTGAATGTTTGGGATCAGATTATGAAATAGCATAATCTGTTTTCAAACCTGCCTTCTTGTTCTTAGCTTTCAAGTGTTGTGCCGAAACTAGCTGCTGAGAAAAA] consensusID : consensus_14856#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [CGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGNGCGAANTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGANGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGANCCGCCTCAAGGTCCGCAAGCTTCCCCCCGCCGAGANCCTCAACTTNCAAGCTCGTCTTTCGCGATTCGATCCTTGGCACAATGGACTTNCATCCACACATGAGGAAGATTTTGCGAACTTGCGGCTGACGANGTTCTNACCGGCGTGTTCCTCAAGGCACTTACGTAATATGAGAGGTTCTTGTTGTGAGCGTTATAATTATGGGTTCCAATTTAAAAATTTAAGGTTTTTTTAAAAAGGCCTGGGTCTTNAAAAGACT] [+] EMBL AU065661 [CGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGNGCGAANTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGANGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGANCCGCCTCAAGGTCCGCAAGCTTCCCCCCGCCGAGANCCTCAACTTNCAAGCTCGTCTTTCGCGATTCGATCCTTGGCACAATGGACTTNCATCCACACATGAGGAAGATTTTGCGAACTTGCGGCTGACGANGTTCTNACCGGCGTGTTCCTCAAGGCACTTACGTAATATGAGAGGTTCTTGTTGTGAGCGTTATAATTATGGGTTCCAATTTAAAAATTTAAGGTTTTTTTAAAAAGGCCTGGGTCTTNAAAAGACT] consensusID : consensus_14856#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [TTTNTTTGGTGGAGAAAGANNATACTTGCTAGCTGTTTCTNATGGTTTGGTAAGGTACACTGNAACATCACCATCTGNACTTTACTGANAACAGGCTCTANGAGAACATGGNATCATATGTTNGGAAGATGAGCATGAAATCGCANCAGGCGGNCCACACTTGAGACAAGCTTCANACTTCCTNATGCCCTTNAAGCTNAAGTGNCAAGAAGGAGGCTACAGATGAAGAANAAACCCTACAAGGATGGNGGATTGNTGGTGATTTGGGAGACCGCGAGAGATAAAATNAACGAANTAATTGATAATGNTAAATTATATGCATGAACATGCCCCAAATCGCCATTTGTGNGCAAGGGNTGAATCCATTACCTTGCTAGCTTTGNAATAGNCCTATNCGATTGTACCTTTATTTCTGANAGCGTACCTGAATGTTTGNGATCAGATTATGAANTANCATAATGTGGNNTTCCAGNNGCTGGACTTCACNAGGCCCCAT] [+] EMBL CB096558 [TTTNTTTGGTGGAGAAAGANNATACTTGCTAGCTGTTTCTNATGGTTTGGTAAGGTACACTGNAACATCACCATCTGNACTTTACTGANAACAGGCTCTANGAGAACATGGNATCATATGTTNGGAAGATGAGCATGAAATCGCANCAGGCGGNCCACACTTGAGACAAGCTTCANACTTCCTNATGCCCTTNAAGCTNAAGTGNCAAGAAGGAGGCTACAGATGAAGAANAAACCCTACAAGGATGGNGGATTGNTGGTGATTTGGGAGACCGCGAGAGATAAAATNAACGAANTAATTGATAATGNTAAATTATATGCATGAACATGCCCCAAATCGCCATTTGTGNGCAAGGGNTGAATCCATTACCTTGCTAGCTTTGNAATAGNCCTATNCGATTGTACCTTTATTTCTGANAGCGTACCTGAATGTTTGNGATCAGATTATGAANTANCATAATGTGGNNTTCCAGNNGCTGGACTTCACNAGGCCCCAT] consensusID : consensus_14856#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence [CATAACGGCATGACAGTGTCTTTTTTTTTTTTTTTATTTCATAATCTGAGCATGAACACTCTATTAAGCTTTCAGAAATAAAGGTACAATCGGCTAGGCTATTACAAAACTGACAAGGTATAACG] [+] EMBL CF322119 [CATAACGGCATGACAGTGTCTTTTTTTTTTTTTTTATTTCATAATCTGAGCATGAACACTCTATTAAGCTTTCAGAAATAAAGGTACAATCGGCTAGGCTATTACAAAACTGACAAGGTATAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14856#0 ------------------------------------------------------------ consensus_14856#3 ------------------------------------------------------------ consensus_14856#1 ------------------------------------------------------------ consensus_14856#2 CCAACGAATCTCACCTCTCGCGGACTCGCCCCGCTCTGTCCTTGCTTCCCTCCTCCGCCG 60 consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 ------------------------------------------------------------ consensus_14856#3 ------------------------------------------------------------ consensus_14856#1 ------------------------------------------------------------ consensus_14856#2 CGGTGTTCAGGGCTTCAGGCGGCGGAGGAGGCGGCGGGNTGGATGGCGCCGGTGTTCGAG 120 consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 ------------------------------------------------------------ consensus_14856#3 ------------------------------------------------------------ consensus_14856#1 ------------------------------------------------------------ consensus_14856#2 AGGCTGACGGGGATCCGAGCACTCGCCGACTCCGCCCGCTTCAAGGCGTGGTTCCTCGAC 180 consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 ------------------------------------------------------------ consensus_14856#3 ------------------------------------------------------------ consensus_14856#1 ------------------------------------------------------------ consensus_14856#2 CAGATTGGTGTTCTTCACCATGGGAATATGCCTTACCTGGTGCCATCCTTGCATTGGGAA 240 consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 ---------------------------------GACACTGACATGGACTGAGGAGTTGAA 27 consensus_14856#3 ------------------------------------------------------------ consensus_14856#1 --------------------------------------------------TGGACTTGCA 10 consensus_14856#2 AGGGGCGAAGATGGTTATCATTAGCAATTCGTTAAGGAGGTCGACTGTAACCATGGAGAA 300 consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 ACCCCGAAACCCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCG-TCGTCCAGGGCGAAG 86 consensus_14856#3 --------------------CGCGTCGTTCCGCCGCCGCCGCCG-TCGTCCAGNGCGAAN 39 consensus_14856#1 TCCACACATGAGGAGGATTTTGCG-CAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGT 69 consensus_14856#2 GCTAGAGAGCCTTGGTTTCACAACTCGTCTTGTTTCCTCTCGGGGCCATCACTAGCGGGG 360 consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 CTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACG 146 consensus_14856#3 -TTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGANGGGACGCAGCAGCTGCCGTACG 98 consensus_14856#1 TCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTT-TATCACT 128 consensus_14856#2 AACTCACA--CATCAGTATCTTCACAAGAACTAAGCTTCTAGCTGTCGGTATCTTCTGCT 418 consensus_14856#4 -----------------------------------------------TTTNTTTGGTGGA 13 consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 TGCGGGAGACGGTGCT-GAAGAA-GCGGAAGGTG--------AACGAGGACTGGGCGGTC 196 consensus_14856#3 TGCGGGAGACGGTGCT-GAAGAA-GCGGAAGGTG--------AACGAGGACTGGGCGGTC 148 consensus_14856#1 TATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGGGCCGTGGGTTC 188 consensus_14856#2 AACAGAAGCTGCANGTGGGGTCTCCTTGA-GGAATGGT----GGGGTGCAATAGA-TATT 472 consensus_14856#4 GAAAGANNATACTTGCTAGCTGTTTCTNATGGTTTGGT----AAGGTACACTGNAACATC 69 consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 AAGAACCGGGAGCGGAAGGCGGCCA--AGAGGCAGCGCCGCCGCGACGAC----GGCAAG 250 consensus_14856#3 AAGAACCGGGAGCGGAAGGCGGCCA--AGAGGCAGCGCCGCCGCGACGAC----GGCAAG 202 consensus_14856#1 CTGGACAAGGAACCTTTCCCTCTTACCAGCAATGATCTCATTGAGAAGGCTCTGGGAGAA 248 consensus_14856#2 ATG-ATCAGAATTAAAGTTGGCTTACCAGCAGTGATCTATTTAAGAAGGCTCTAGGAGAA 531 consensus_14856#4 ACC-ATCTGNACT---------TTACTGANAAC-------------AGGCTCTANGAGAA 106 consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 GGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCG-ACTT 309 consensus_14856#3 GGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCG-ACTT 261 consensus_14856#1 TATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATC-GCATCAGTTGGCCCACACTT 307 consensus_14856#2 CATGGCATCATATGTTTGGAAGAT---GAGCATGAAATC-GCAACAGTCGGTCCACACTT 587 consensus_14856#4 CATGGNATCATATGTTNGGAAGAT---GAGCATGAAATC-GCANCAGGCGGNCCACACTT 162 consensus_14856#5 ------------------------------CATAACGGC-ATGACAGTGTCTTTTTTTTT 29 * * ** ** consensus_14856#0 CGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGAC----CCTCA 365 consensus_14856#3 CGTCCGGATGAAGANCCGCCTCAAGGTCCGCAAGCTTCCCCCCGCCGAGAN----CCTCA 317 consensus_14856#1 CAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCA 367 consensus_14856#2 CAGACAAGCTTCAAACTTCCTCATGCCCTTCAAGCTCAAGTGTCAAGAAGG-AGGTTACA 646 consensus_14856#4 GAGACAAGCTTCANACTTCCTNATGCCCTTNAAGCTNAAGTGNCAAGAAGG-AGGCTACA 221 consensus_14856#5 TTTTTTATTTCATAATCTGAGCATGAACACTCTA-TTAAGCTTTCAGAAATAAAGGTACA 88 * * * * ** ** consensus_14856#0 ACT-CCAAGCTCGTCTT-CGCGATTCGC-----ATCCCTGGCACAATGGACTTGCA-TCC 417 consensus_14856#3 ACTTNCAAGCTCGTCTTTCGCGATTCG------ATCCTTGGCACAATGGACTTNCA-TCC 370 consensus_14856#1 GATGAAGAAGAAACCCTTCAAGGATGG--------TGGTGACTCAGGGAACCGCGA-AGA 418 consensus_14856#2 GATGAAGAAGAAACCCTACAAGGATGGTGGATTGGTGGTGATTTGGGAGACCGTGA-AGA 705 consensus_14856#4 GATGAAGAANAAACCCTACAAGGATGGNGGATTGNTGGTGATTTGGGAGACCGCGAGAGA 281 consensus_14856#5 ATCGGCTAGGCTAT--TACAAAACTGAC------AAGGTATAACG--------------- 125 * * * * * consensus_14856#0 ACACATGAGGAGGATTTTGCGCAAGCTGCGGCTG-ACGCA-GGTCCT-CACCGGCGTGTT 474 consensus_14856#3 ACACATGAGGAAGATTTTGCG-AACTTGCGGCTG-ACG-A-NGTTCT-NACCGGCGTGTT 425 consensus_14856#1 TAAAATCAATGAATTAATTGAGAAGTTG-AATTA-GTGCA-GAACCTATGCCCAGTCGTA 475 consensus_14856#2 TAAAATCAACGAATTAATTGATAA-GTTAAATTA-ATGCA-GAACATGCCCCAAATCGCC 762 consensus_14856#4 TAAAATNAACGAANTAATTGATAATGNTAAATTATATGCATGAACATGCCCCAAATCGCC 341 consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 CCTCAAG-GCCACTGACGCTACTATGAAGAGGCTTCTT-GTTGTGGAGCCGTTTATCACT 532 consensus_14856#3 CCTCAAG-GC-ACTTACG-TAATATGAGAGG--TTCTT-GTTGTGAG--CGTT--ATAAT 475 consensus_14856#1 ATTCATGTGCAAGGGATG--GATCCGTTATACCTTGTCAGTTTTGTAATAGCC---TAGC 530 consensus_14856#2 ATTTGTGTGCAAGGGATG--AATCCATTACC--TTGTTAGCTTTGTAATAGCC---TAGC 815 consensus_14856#4 ATTTGTGNGCAAGGGNTG--AATCCATTACC--TTGCTAGCTTTGNAATAGNCC--TATN 395 consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 TATGGGTTCCCAAATTTG-AAGAATGTGA--AGGATCTTATTTACAAGAAGGGCCGTGGG 589 consensus_14856#3 TATGGGTTCC--AATTT--AAAAATTTAA--GG-----TTTTTTTAAAAAGGCC--TGGG 522 consensus_14856#1 CGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGGTCATGCTCAAAAATATATATTTT 590 consensus_14856#2 CGATTGTACCTTTATTTCTGAAAGCGTACCTGA------ATGTTTGGGATCAGAT-TATG 868 consensus_14856#4 CGATTGTACCTTTATTTCTGANAGCGTACCTGA------ATGTTTGNGATCAGAT-TATG 448 consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 TTCCTGGACAAGGAACCTTTCCCTCTTACCAGCAATGATCTCATTGAGAAGGCTCTGGGA 649 consensus_14856#3 TCTTNAAAAGACT----------------------------------------------- 535 consensus_14856#1 TGTTTAAAATTTTTGTATTTAATGATGGTGCGGTTTTTGATTTACTGAATACTTGGGGGG 650 consensus_14856#2 AAATAGCATAATCTGTTTTCAAACCTGCCTTCTTGTTCTTAGCTTTCAAGTGTTGTGCCG 928 consensus_14856#4 AANTANCATAATGTGGNNTTCCAGNNGCTGGACT-TCACNAGGCCCCAT----------- 496 consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 GAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCATCAGTTGGCCCACAC 709 consensus_14856#3 ------------------------------------------------------------ consensus_14856#1 GGGCCCGGGCCCAAATGGGCCTTTGTTGGTGTTTTACTCCCCTGTATGGTCTGTTGGTCT 710 consensus_14856#2 AAACTAGCTGCTGAGAAAAA---------------------------------------- 948 consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 TTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTG 769 consensus_14856#3 ------------------------------------------------------------ consensus_14856#1 AGCGGATGCGTGGAAACCTGTGTGGCCCCGTTTTGTGTTTTGTTTTCTTCCTTTTCTCCT 770 consensus_14856#2 ------------------------------------------------------------ consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 CAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATC 829 consensus_14856#3 ------------------------------------------------------------ consensus_14856#1 TTGCGGGTAGTCCATCCCCCCCCCCCCGCAACCTGTTTTCTGCGTTATTGATATTGTATT 830 consensus_14856#2 ------------------------------------------------------------ consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 AATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTGC 889 consensus_14856#3 ------------------------------------------------------------ consensus_14856#1 CATTGTGTCTTTTATCTGCTACCATCTCGTGTCTGTTACTTCCTAATCTTCGACTTACCT 890 consensus_14856#2 ------------------------------------------------------------ consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 AAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTAT 949 consensus_14856#3 ------------------------------------------------------------ consensus_14856#1 CTTTTTTACGTCTCCTCCCGATATTCTTTTTTCTCTTCAGCCTCTTTCTTGTTTCTGTCT 950 consensus_14856#2 ------------------------------------------------------------ consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 TTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAATCTGTTTTCCT 1009 consensus_14856#3 ------------------------------------------------------------ consensus_14856#1 CCGT-------------------------------------------------------- 954 consensus_14856#2 ------------------------------------------------------------ consensus_14856#4 ------------------------------------------------------------ consensus_14856#5 ------------------------------------------------------------ consensus_14856#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1043 consensus_14856#3 ---------------------------------- consensus_14856#1 ---------------------------------- consensus_14856#2 ---------------------------------- consensus_14856#4 ---------------------------------- consensus_14856#5 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||