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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1220 fasta sequence
[GAAGTTGGGGGTTGGGGGGTTGGGCGAGGAGGAGGAAGAGGAGTACAAGAAAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGAT-GACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG-AG-TGAAATTCGTGTCCGTGCCA-GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG-AAGTACATCGTG-CCCTACTTG-AAGGGAAAGGACA-AT-GGAAAGGCTTGGATTGCTGCGA-CTTGGCGTGCCATCACCAACA-CCATCG-GTGGGGAAGCGTTTGTGCTCAA-CTAGCTA-CTAGTA-CTAGTATCA-TGTTGCA-GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG-CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTTAAAAAAAAAA]
[+] EMBL AK120839 [GAAGTTGGGGGTTGGGGGGTTGGGCGAGGAGGAGGAAGAGGAGTACAAGAAAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGAT GACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTG CCCTACTTG AAGGGAAAGGACA AT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCAACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TGTTGCA GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTT ]
[+] EMBL CF298723 [ GGGGGTTGGGCGAGGAGGAGGAAGAGGAGTACAAGAAAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCCCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGgtccgc ]
[-] EMBL CB624275 [ GTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGAT GACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTG CCCTACTTG AAGGGAAAGGACA AT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCAACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TGTTGCA GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGCCAAAAaaaaggaa ]
[-] EMBL CB657907 [ ATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGAT GACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTG CCCTACTTG AAGGGAAAGGACA AT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCAACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TGTTGCA GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTGTATATGAAGACAAAATTGA ]
[+] EMBL AU030664 [ TTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGAT GACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTGCCCCTACTTG AAGGGAAAGGACA ATGGGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCAACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TGTTGCA GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTTAAAAAA ]
[+] EMBL BM039035 [ TACCACCTTAGAGAATTTGGTATAAATCATGTTTCAGGATGGACGCTGTCTTGATACCTCGGGAAACAGCAT GTTTGGTTACTATCCAGATGGA GTTTCGATCCTGTCCTGCCCCCTCAGAAGAC AAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTG CCCTACTTG AAGGGAAAGGACC AT GGAAAGGCTTGGATTGCTGCGACCTTGGCGTGCCATCACCAACACCCATCG GTGGGGAAGCGTTTGTGCTCAACCTAGCTACCTAGTACCTAGTATCACTGTTGCACGCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACC AACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACCAAATTGAGCTGATCTTAAAAAAAAAA]
[+] EMBL BM420348 [ CTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAA CTGTACATGGAGGACTGGATT GTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCACGGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCTTG CCCTACTTG AAGGGAAAGGAC AT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACC ACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TNTTGCA GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACC AACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGAC AAATTGAGCTGATCTTAAAAAA ]
[+] EMBL BQ908484 [ CCAGATGGA GTTTCGATCCTGTCCTGCCCCCTCAGAAGACCAA CTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAGTAGCTGAAATTCGTGTCCGTGCCACGGGGGGCACCTGGGTATTTCCAAGACTGACATGATGTAAGTACATCGTG CCCTACTTGTAAGGGAAAGGACACAT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCTACA CCATCGTGTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TGTTCAA CCCTCTTTCTTGGCTCTGATGATGATNGTAAAAAGATACAGGTGTACAGTGCCAGGATACGC TTTCATTCCCTG GCAAGTATA GTATTCCTCATCA GTATACATTCACC AACTAGGAGTTCAAGTAACAAGTACTCCTATATANGAAGAC AAATTGAGCTGATCTTAAAA ]
[-] EMBL CF298724 [ CAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTG CCCTACTTG AAGGGAAAGGACA AT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCAACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGATA CTAGTA CTAGTATCA TGTTGCA GCCTCTTTCTTGGCTATGAAG TAATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTA ]
consensusID : consensus_14861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 915 fasta sequence
[GGGGTTGGGGGGNTGGGCGAGNAGGAGGAANANGAGTACAAGAAAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTG-ATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGATGACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGGCACCTGGGTATTTCCAAGACTGACA]
[+] EMBL AU162311 [GGGGTTGGGGGGNTGGGCGAGNAGGAGGAANANGAGTACAAGAAAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTGAATTGGTCGAGCAGTTGTTGAGTTTTGTGAT ]
[+] EMBL CB624274 [ AAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTG ATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGATGACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACA ]
[+] EMBL CB657906 [ TCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTG ATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGATGACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGGCACCTGGGTATTTCCAAGACTGACA]
[+] EMBL CA753267 [ GAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTG ATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTACATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTA TAATCATGTTTCAGG ]
consensusID : consensus_14861#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[AGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTGTACTACTACACTACACTACATCTCTCTTTCTTTCTTTTTCAGTTTCCTTCCCTTCTCAATTAGATTAATTAATTAATTAATTAATTACTTGTGCTACTGCCTGCTAATGATGGAAAACGCATAGTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGTCCACTACTTGACTTCTTCAATCTAGCTAGCCTAGGAATCTTGTTTACCTACTAGTACCAGTAATAAAAACAACTCTTTCTATATTCTTTCCACATAGTACTAATTTCTCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTGTAAGTTCATCTCATTGTTTCCAAGTGATACCTAGTTTGTGATGAAAAGTTAAAATTTAATAATCCAAGATTGTGCATGGATCTTCTCAGATGACAC]
[+] EMBL CB640012 [AGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTGTACTACTACACTACACTACATCTCTCTTTCTTTCTTTTTCAGTTTCCTTCCCTTCTCAATTAGATTAATTAATTAATTAATTAATTACTTGTGCTACTGCCTGCTAATGATGGAAAACGCATAGTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGTCCACTACTTGACTTCTTCAATCTAGCTAGCCTAGGAATCTTGTTTACCTACTAGTACCAGTAATAAAAACAACTCTTTCTATATTCTTTCCACATAGTACTAATTTCTCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTGTAAGTTCATCTCATTGTTTCCAAGTGATACCTAGTTTGTGATGAAAAGTTAAAATTTAATAATCCAAGATTGTGCATGGATCTTCTCAGATGACAC]
consensusID : consensus_14861#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence
[AGGCAGAGACAAGGGGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACNCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGGCACCTGGGTATTTCCAAGACTGACATGATGAAGTACATCGTGCCCTACTTGAAGGGAAAGGCCAATGGAAAGGCTTGGATTGCTGCGACTTGGCGTGCCATCACCAACACCATCGGTGGGGAAGCGTTTGTGCTCAACTAGCTCCTAGTACTAGTATCATGTTGCAGCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTGCAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGTTCTTAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762318 [AGGCAGAGACAAGGGGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACNCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGGCACCTGGGTATTTCCAAGACTGACATGATGAAGTACATCGTGCCCTACTTGAAGGGAAAGGCCAATGGAAAGGCTTGGATTGCTGCGACTTGGCGTGCCATCACCAACACCATCGGTGGGGAAGCGTTTGTGCTCAACTAGCTCCTAGTACTAGTATCATGTTGCAGCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTGCAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGTTCTTAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14861#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 391 fasta sequence
[TTTTTTTTTTTTTACAGTGCAGGATACGCGTTTCATT-CCCTGTGC-AAGTATATGTATT-CCTCATCATGTATACATTCA-CCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTTACATGATGGTATCACAAATGATTCGGAGAAGTAGTAACAAATTTATTTGTGGGTTTGCGGCCACCCTGGGACTTCCAGGCAGTGATGGCGGTGAGCAGAGAGCGGTTGGGCACAAGTGTCTTGTTTGGCATCCGAACATTGGTGACCGGAGACACATCCTTGTCGCACACCCACATCTCAATGGCGTGGCGCTCGTACGAGTAGCCGTCCGACGCGATGCACGGCTCTTGCATAACCCTCTTGAGTATGGGG]
[-] EMBL AU092985 [TTTTTTTTTTTTTACAGTGCAGGATACGCGTTTCATT CCCTGTGC AAGTATATGTATT CCTCATCATGTATACATTCA CCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTTACATGATGGTATCACAAATGATTCGGAGAAGTAGTAACAAATTTATTTGTGGGTTTGCGGCCACCCTGGGACTTCCAGGCAGTGATGGCGGTGAGCAGAGAGCGGTTGGGCACAAGTGTCTTGTTTGGCATCCGAACATTGGTGACCGGAGACACATCCTTGTCGCACACCCACATCTCAATGGCGTGGCGCTCGTACGAGTAGCCGTCCGACGCGATGCACGGCTCTTGCATAACCCTCTTGAGTATGGG ]
[-] EMBL C28485 [ CAGTGCAGGATACGCGTTTCATTCCCCTGTGCAAAGTATATGTATTCCCTCATCATGTATACATTCACCCAAACTAGNAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTTACATGATGGTATCACAAATGATTCGGAGAAGTAGTAACAAATTTATTTGTGGGTTTGCGGCCACCCTGGGACTTCCAGGCAGTGATGGCGGTGAGCAGAGAGCGGTTGGGCACAAGTGTCTTGTTTGGCATCCGAACATTGGTGACCGGAGACACATCCTTGTCGCACACCCACATCTCAATGGCGTGGCGCTCGTACGAGTAGCCGTCCGACGCGATGCACGGCTCTTGCATAACCCTCTTGAGTATGGGG]
consensusID : consensus_14861#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence
[GATTCGGCACGATTATAATCGCAGATGTTACATANAGATGATGGGCCGGAAAGCGTNNGTGCTCAACTAGCTACTANTACTAGTATCATGNTGCAGCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTGCAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAG]
[+] EMBL AA751838 [GATTCGGCACGATTATAATCGCAGATGTTACATANAGATGATGGGCCGGAAAGCGTNNGTGCTCAACTAGCTACTANTACTAGTATCATGNTGCAGCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTGCAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14861#0 GAAGTTGGGGGTTGGGGGGTTGGGCGAGGAGGAGGAAGAGGAGTACAAGAAAGAAAGAAA 60
consensus_14861#1 -------GGGGTTGGGGGGNTGGGCGAGNAGGAGGAANANGAGTACAAGAAAGAAAGAAA 53
consensus_14861#3 ------------------------------------------------------------
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 ------------------------------------------------------------
consensus_14861#0 GATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTC 120
consensus_14861#1 GATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTC 113
consensus_14861#3 ------------------------------------------------------------
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 ----AGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTC 56
consensus_14861#0 GTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAG 180
consensus_14861#1 GTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAG 173
consensus_14861#3 ------------------------------------------------------------
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 GTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAG 116
consensus_14861#0 TGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTG------------- 227
consensus_14861#1 TGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCAT 233
consensus_14861#3 -----------AGGCAGAGACAAGGGGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAA 49
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 TGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCAT 176
consensus_14861#0 -----------TGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAA 276
consensus_14861#1 GGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAA 293
consensus_14861#3 AGCTG-TACATGGAGGACTGGATTGGTCTCAAGACNCTGGATGATGAGGGGAGAGTGAAA 108
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ----------------------------------TTTTTTTTTTTTTACAGTGCAGGATA 26
consensus_14861#2 GGCTACTGCCTGTACTACTACACTACACTACATCTCTCTTTCTTTCTTTTTCA------- 229
consensus_14861#0 CAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAAT 336
consensus_14861#1 CAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAAT 353
consensus_14861#3 TTCGTGTCCGTGCCAGGGGGGCACCTGGGTATTTCCAAGACTGACATGATGAAGTACATC 168
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 CGCGT-TTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACT 85
consensus_14861#2 ---GTTTCCTTCCCTTCTCAATTAGATTAATTAATTAATTAATTAATTACTTGTGCTACT 286
consensus_14861#0 AT-AGTTGGTCTTTCACAGGGGAACCTGAT-TGGTCGAGCAGTTGTTGAGTTTTGTGATG 394
consensus_14861#1 AT-AGTTGGTCTTTCACAGGGGAACCTGAT-TGGTCGAGCAGTTGTTGAGTTTTGTGATG 411
consensus_14861#3 GTGCCCTACTTGAAGGGAAAGGCCAATGGA-AAGGCTTGG-ATTGCTGCGACTTGGCGTG 226
consensus_14861#5 ---------------------------------GATTCGGCACGATTATAATCGCAGATG 27
consensus_14861#4 AGGAGTTCAAGTAACAAGTACTCCTATATA-TGAAGACAAAATTGAGCTGATCTTACATG 144
consensus_14861#2 GCCTGCTAATGATGGAAAACGCATAGTGAAATCGGAAGTGGAACATGGGACTCTTGGTTA 346
*
consensus_14861#0 ATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAG 454
consensus_14861#1 ATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAG 471
consensus_14861#3 CCATCACCAACACCATCGGTGGGGAAGCG-TTTGTGCTCAACTAGCTCCTA--GTACTAG 283
consensus_14861#5 TTA-CATANAGATGATGGGCCGGAAAGCG-TNNGTGCTCAACTAGCTACTA--NTACTAG 83
consensus_14861#4 ATGGTATCACAA--ATGATTCGGAGAA---GTAGTAACAAATTTATTTGTG--GGTTTGC 197
consensus_14861#2 ATGCCTCTTCAGAAACAGGTCCACTACTTGACTTCTTCAATCTAGCTAGCCTAGGAATCT 406
* *
consensus_14861#0 TGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGA 514
consensus_14861#1 TGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGA 531
consensus_14861#3 TATCATGTTGCAGCCTCT---TTCTTGGCTCTGATGATGATTGTAAAA---AGATACAGG 337
consensus_14861#5 TATCATGNTGCAGCCTCT---TTCTTGGCTCTGATGATGATTGTAAAA---AGATACAGG 137
consensus_14861#4 GGCCACCCTGGGAC-------TTCCAGGCAGTGATGGCGGTGAGCAGA---GAGCGGTTG 247
consensus_14861#2 TGTTTACCTACTAGT-----ACCAGTAATAAAAACAACTCTTTCTATATTCTTTCCACAT 461
* * *
consensus_14861#0 TCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTG 574
consensus_14861#1 TCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTG 591
consensus_14861#3 TGTACA-GTG-CAGGATACG---CGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATC 392
consensus_14861#5 TGTACA-GTG-CAGGATACG---CGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATC 192
consensus_14861#4 GGCACAAGTGTCTTGTTTGG---CATCCGAACATTGGTGACCGGAGACACAT-CCTTGTC 303
consensus_14861#2 AGTACTAATTTCTCCCTCATGCTGGTACTGCT-TCAGTGCCACTTTGTG-GTGTAAGTTC 519
** * *** * *
consensus_14861#0 ATATTTCAGATTATTTAAAGGGTTGTAGATTTC-TTCCAAAGCTTAACAATGAGTTACCA 633
consensus_14861#1 ATATTTCAGATTATTTAAAGGGTTGTAGATTTC-TTCCAAAGCTTAACAATGAGTTACCA 650
consensus_14861#3 ATGTATAC-ATTCACCAA--ACTAGGAGTTCAA-GTAACAAGTACTCCTATATATGAAGA 448
consensus_14861#5 ATGTATAC-ATTCACCAA--ACTAGGAGTTCAA-GTAACAAGTACTCCTATATATGAAGA 248
consensus_14861#4 GCACACCC-ACATCTCAATGGCGTGGCGCTCGT-ACGAGTAGCCGTCCGACGCGATGCAC 361
consensus_14861#2 AT-CTCATTGTTTCCAAGTGATACCTAGTTTGTGATGAAAAGTTAAAATTTAATAATCCA 578
* * * **
consensus_14861#0 GGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATC 693
consensus_14861#1 GGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATC 710
consensus_14861#3 CAAAATTGAGCTGTTCTTAAAAAAAAAAAAAAAAAAAA---------------------- 486
consensus_14861#5 CAAAATTGAG-------------------------------------------------- 258
consensus_14861#4 GGCTCTTGCATAACCCTCTTGAGTATGGGG------------------------------ 391
consensus_14861#2 AGATTGTGCATGGATCTTCTCAGATGACAC------------------------------ 608
*
consensus_14861#0 ATGTTTCAGGATGACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCA 753
consensus_14861#1 ATGTTTCAGGATGACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCA 770
consensus_14861#3 ------------------------------------------------------------
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 ------------------------------------------------------------
consensus_14861#0 GATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGG 813
consensus_14861#1 GATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGG 830
consensus_14861#3 ------------------------------------------------------------
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 ------------------------------------------------------------
consensus_14861#0 ATTGGTCTCAAGACGCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGG 873
consensus_14861#1 ATTGGTCTCAAGACGCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGG 890
consensus_14861#3 ------------------------------------------------------------
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 ------------------------------------------------------------
consensus_14861#0 CACCTGGGTATTTCCAAGACTGACATGATGAAGTACATCGTGCCCTACTTGAAGGGAAAG 933
consensus_14861#1 CACCTGGGTATTTCCAAGACTGACA----------------------------------- 915
consensus_14861#3 ------------------------------------------------------------
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 ------------------------------------------------------------
consensus_14861#0 GACAATGGAAAGGCTTGGATTGCTGCGACTTGGCGTGCCATCACCAACACCATCGGTGGG 993
consensus_14861#1 ------------------------------------------------------------
consensus_14861#3 ------------------------------------------------------------
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 ------------------------------------------------------------
consensus_14861#0 GAAGCGTTTGTGCTCAACTAGCTACTAGTACTAGTATCATGTTGCAGCCTCTTTCTTGGC 1053
consensus_14861#1 ------------------------------------------------------------
consensus_14861#3 ------------------------------------------------------------
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 ------------------------------------------------------------
consensus_14861#0 TCTGATGATGATTGTAAAAAGATACAGGTGTACAGTGCAGGATACGCGTTTCATTCCCTG 1113
consensus_14861#1 ------------------------------------------------------------
consensus_14861#3 ------------------------------------------------------------
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 ------------------------------------------------------------
consensus_14861#0 TGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAA 1173
consensus_14861#1 ------------------------------------------------------------
consensus_14861#3 ------------------------------------------------------------
consensus_14861#5 ------------------------------------------------------------
consensus_14861#4 ------------------------------------------------------------
consensus_14861#2 ------------------------------------------------------------
consensus_14861#0 GTACTCCTATATATGAAGACAAAATTGAGCTGATCTTAAAAAAAAAA 1220
consensus_14861#1 -----------------------------------------------
consensus_14861#3 -----------------------------------------------
consensus_14861#5 -----------------------------------------------
consensus_14861#4 -----------------------------------------------
consensus_14861#2 -----------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||