cluster # 1488

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Oryza sativa
cluster # 1488 cluster # 1488 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1488#0 length = 1723 sequences # 1

consensus_1488#1 length = 580 sequences # 1

consensusID : consensus_1488#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1723
fasta sequence

                              [GAGAGGGGATTCAGTGAGGAAGGGAGAGAGAGATAGATCCCTGGAGGTTTGCAGGAGGGGATGGAACAGCTGTGGGTGCCATCGCTTCCGATTCTTGGAGGAAGGATATTGCCTATGCTCAGGCACTACTGTGGCTTTGGAAGTCATCATCCCTTAACCTGGAGAAGCTTACAAATTACTGGAAGAAAACAGAAGCATAATGGGTGTTGGATTGCATACTGCTTACCAAGCCATAATGGAACTTCTATTTCAGACACAAATGGTGTTCGAAAAGACTTAGCTTTGCCTGACAATTTGCTTCGTGATGCTCATATTCTCTATTGTACATCTCCTGCCATGGGTCATAACAAGGAAGCGCATCCAGAAACTAACAAAAGAGTTCCTGCAATAGTTGATGCTCTCGAAAAACTGGAGCTTACTTCGAAGCATCGTGGTTCACAGGTTCTTGAAATTCAAGATTTCCAACCTGCTTCACTTGATGATATTGCACTAGTTCATTCAAGATCATACATAACTGGACTTGAAAAGGCTATGAGTAGGGCTTCAGATGAAGGTTTGATATTCATTGAAGGAACTGGACCTACATATGCTACCCAGACTACTTTCCAAGAATGTCTCCTTTCTGCTGGTGCTGGAATTACATTGGTTGATTCAGTGGTTGCAGCATCAAAGTTGGGCCCGAAGCCACCGCTCGGCTTTGCCTTAGTAAGGCCACCAGGACATCATGCTGTTCCTGAAGGTCCCATGGGCTTCTGTGTCTTTGGGAACATTGCAGTGGCAGCTCGGTATGCTCAGAATCAACATGGTTTAAAGCGGGTCATGATAATAGATTTTGATGTTCACCACGGTAACGGCACATGTGACGCCTTTTATGAGGATCCGGACATATTCTTCCTCTCAACTCATCAGCTTGGAAGCTATCCTGGCACCGGTAAGATCCACCAAGTTGGCCAGGGCAACGGCGAGGGCACGACGCTCAACCTGCCACTACCCGGTGGCTCAGGCGATTACGCGATGAGGTGCGCGTTTGATGAGGTTATTGCCCCAGCTGCCCAGCGGTTCAAACCTGACATCATCCTCGTTTCAGCCGGGTACGACGCGCACGCGCTGGACCCGCTGGCGGGGCTGCAGTTCACGACGGGGACGTTCTACATGCTGGCGGCGAGGATCCGGGAGGTGGCGGCGGAGCTGTGCGGCGGGCGGTGCGTCTTCTTCCTGGAGGGCGGCTACAACCTGGAGTCGCTGTCCAGCTCAGTGGCCGACACCTTCCGTGCGTTCCTCGGCGAGCCCAGCCTCGCCGCGCGGTTCGACGACCCGGCGATGCTCTACGAGGAGCCCACGCGGAAGATCAGGGAGGCCATCGACAAGGCCAAGCACCTCCACTCGCTCTAAGCGCGGCGCCCAGAAGATTGCAACAGTATCTATACTTGGCTGCTGAAACTGCTTGCTGATGCTGGTCAACAACTCAAGATCATATTCATGTCTTGTTAGCTTTTGCACTTTCCAGTGTAGCATTGTACATCGGAAAAGCACGGCATAGTCATTTACATCTTAGTTGCTGTGAATCAGATACATTCGATCGCAAGCTTGTCAATAGTTCAATACCAGTTGTGTAGATTAATACCAGTACTACTGCGATTACTTGCATCTTTCTACTCCAGTTAGTGTCCAGTGGAACCTGTCGAGCTATCAGCATTTTGTTTTATAATACAAAAGCTGACAT]

[+] EMBL AK072557             [GAGAGGGGATTCAGTGAGGAAGGGAGAGAGAGATAGATCCCTGGAGGTTTGCAGGAGGGGATGGAACAGCTGTGGGTGCCATCGCTTCCGATTCTTGGAGGAAGGATATTGCCTATGCTCAGGCACTACTGTGGCTTTGGAAGTCATCATCCCTTAACCTGGAGAAGCTTACAAATTACTGGAAGAAAACAGAAGCATAATGGGTGTTGGATTGCATACTGCTTACCAAGCCATAATGGAACTTCTATTTCAGACACAAATGGTGTTCGAAAAGACTTAGCTTTGCCTGACAATTTGCTTCGTGATGCTCATATTCTCTATTGTACATCTCCTGCCATGGGTCATAACAAGGAAGCGCATCCAGAAACTAACAAAAGAGTTCCTGCAATAGTTGATGCTCTCGAAAAACTGGAGCTTACTTCGAAGCATCGTGGTTCACAGGTTCTTGAAATTCAAGATTTCCAACCTGCTTCACTTGATGATATTGCACTAGTTCATTCAAGATCATACATAACTGGACTTGAAAAGGCTATGAGTAGGGCTTCAGATGAAGGTTTGATATTCATTGAAGGAACTGGACCTACATATGCTACCCAGACTACTTTCCAAGAATGTCTCCTTTCTGCTGGTGCTGGAATTACATTGGTTGATTCAGTGGTTGCAGCATCAAAGTTGGGCCCGAAGCCACCGCTCGGCTTTGCCTTAGTAAGGCCACCAGGACATCATGCTGTTCCTGAAGGTCCCATGGGCTTCTGTGTCTTTGGGAACATTGCAGTGGCAGCTCGGTATGCTCAGAATCAACATGGTTTAAAGCGGGTCATGATAATAGATTTTGATGTTCACCACGGTAACGGCACATGTGACGCCTTTTATGAGGATCCGGACATATTCTTCCTCTCAACTCATCAGCTTGGAAGCTATCCTGGCACCGGTAAGATCCACCAAGTTGGCCAGGGCAACGGCGAGGGCACGACGCTCAACCTGCCACTACCCGGTGGCTCAGGCGATTACGCGATGAGGTGCGCGTTTGATGAGGTTATTGCCCCAGCTGCCCAGCGGTTCAAACCTGACATCATCCTCGTTTCAGCCGGGTACGACGCGCACGCGCTGGACCCGCTGGCGGGGCTGCAGTTCACGACGGGGACGTTCTACATGCTGGCGGCGAGGATCCGGGAGGTGGCGGCGGAGCTGTGCGGCGGGCGGTGCGTCTTCTTCCTGGAGGGCGGCTACAACCTGGAGTCGCTGTCCAGCTCAGTGGCCGACACCTTCCGTGCGTTCCTCGGCGAGCCCAGCCTCGCCGCGCGGTTCGACGACCCGGCGATGCTCTACGAGGAGCCCACGCGGAAGATCAGGGAGGCCATCGACAAGGCCAAGCACCTCCACTCGCTCTAAGCGCGGCGCCCAGAAGATTGCAACAGTATCTATACTTGGCTGCTGAAACTGCTTGCTGATGCTGGTCAACAACTCAAGATCATATTCATGTCTTGTTAGCTTTTGCACTTTCCAGTGTAGCATTGTACATCGGAAAAGCACGGCATAGTCATTTACATCTTAGTTGCTGTGAATCAGATACATTCGATCGCAAGCTTGTCAATAGTTCAATACCAGTTGTGTAGATTAATACCAGTACTACTGCGATTACTTGCATCTTTCTACTCCAGTTAGTGTCCAGTGGAACCTGTCGAGCTATCAGCATTTTGTTTTATAATACAAAAGCTGACAT]




>consensus_1488#0
GAGAGGGGATTCAGTGAGGAAGGGAGAGAGAGATAGATCCCTGGAGGTTTGCAGGAGGGG
ATGGAACAGCTGTGGGTGCCATCGCTTCCGATTCTTGGAGGAAGGATATTGCCTATGCTC
AGGCACTACTGTGGCTTTGGAAGTCATCATCCCTTAACCTGGAGAAGCTTACAAATTACT
GGAAGAAAACAGAAGCATAATGGGTGTTGGATTGCATACTGCTTACCAAGCCATAATGGA
ACTTCTATTTCAGACACAAATGGTGTTCGAAAAGACTTAGCTTTGCCTGACAATTTGCTT
CGTGATGCTCATATTCTCTATTGTACATCTCCTGCCATGGGTCATAACAAGGAAGCGCAT
CCAGAAACTAACAAAAGAGTTCCTGCAATAGTTGATGCTCTCGAAAAACTGGAGCTTACT
TCGAAGCATCGTGGTTCACAGGTTCTTGAAATTCAAGATTTCCAACCTGCTTCACTTGAT
GATATTGCACTAGTTCATTCAAGATCATACATAACTGGACTTGAAAAGGCTATGAGTAGG
GCTTCAGATGAAGGTTTGATATTCATTGAAGGAACTGGACCTACATATGCTACCCAGACT
ACTTTCCAAGAATGTCTCCTTTCTGCTGGTGCTGGAATTACATTGGTTGATTCAGTGGTT
GCAGCATCAAAGTTGGGCCCGAAGCCACCGCTCGGCTTTGCCTTAGTAAGGCCACCAGGA
CATCATGCTGTTCCTGAAGGTCCCATGGGCTTCTGTGTCTTTGGGAACATTGCAGTGGCA
GCTCGGTATGCTCAGAATCAACATGGTTTAAAGCGGGTCATGATAATAGATTTTGATGTT
CACCACGGTAACGGCACATGTGACGCCTTTTATGAGGATCCGGACATATTCTTCCTCTCA
ACTCATCAGCTTGGAAGCTATCCTGGCACCGGTAAGATCCACCAAGTTGGCCAGGGCAAC
GGCGAGGGCACGACGCTCAACCTGCCACTACCCGGTGGCTCAGGCGATTACGCGATGAGG
TGCGCGTTTGATGAGGTTATTGCCCCAGCTGCCCAGCGGTTCAAACCTGACATCATCCTC
GTTTCAGCCGGGTACGACGCGCACGCGCTGGACCCGCTGGCGGGGCTGCAGTTCACGACG
GGGACGTTCTACATGCTGGCGGCGAGGATCCGGGAGGTGGCGGCGGAGCTGTGCGGCGGG
CGGTGCGTCTTCTTCCTGGAGGGCGGCTACAACCTGGAGTCGCTGTCCAGCTCAGTGGCC
GACACCTTCCGTGCGTTCCTCGGCGAGCCCAGCCTCGCCGCGCGGTTCGACGACCCGGCG
ATGCTCTACGAGGAGCCCACGCGGAAGATCAGGGAGGCCATCGACAAGGCCAAGCACCTC
CACTCGCTCTAAGCGCGGCGCCCAGAAGATTGCAACAGTATCTATACTTGGCTGCTGAAA
CTGCTTGCTGATGCTGGTCAACAACTCAAGATCATATTCATGTCTTGTTAGCTTTTGCAC
TTTCCAGTGTAGCATTGTACATCGGAAAAGCACGGCATAGTCATTTACATCTTAGTTGCT
GTGAATCAGATACATTCGATCGCAAGCTTGTCAATAGTTCAATACCAGTTGTGTAGATTA
ATACCAGTACTACTGCGATTACTTGCATCTTTCTACTCCAGTTAGTGTCCAGTGGAACCT
GTCGAGCTATCAGCATTTTGTTTTATAATACAAAAGCTGACAT

consensusID : consensus_1488#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [ATTCGNCCGNTGGAACTACCTGGCACCGGTCAGATCCACCAANTTGGCCAGGCAACGGCGAAGGCACGACGCTCAACCTGCCACTACCCGGTGGCTCAGGCGATTACGCNATGANGTGCGCGTTTGATGANGTTATTGCCCCAGCTGCCCAGCGGTTCAAACCTGACATCATCCTCGTTTCAGCCGGGTNCGACNCGCACGCGCTGGACCCGCTGGCGGGGCTGCAGTTCACGACAGGGACGTTCTNCATGCTGGCGGCGAAGATCCGGGAAGTGGCGGCGGAACTGTTCCGCGGGCGGTGCGTCTTCTTCCTGGANGGCGGCTACAACCTGGANTCCTGTCCANCTCNNTGGCCGACACCTTCCGTGCGTTCCTCGGCGAACCCACCTCCCCGCGCGGTTCGACNACCNGCGATGCTCTNCNAAGAACCCACCCNGAAAATCTTGGAAGCCATCCACAAAGGCAAGCACCTCCACTCGCTCTTANCGCGGNGCCCANAAAATTGCAACANTATCTNTNCTTGGCTGCTGAAACTGCTTGCTGATTCTGGTCCACAACTCNAGATCATATTCNTGTCTTG]

[+] EMBL BE228346             [ATTCGNCCGNTGGAACTACCTGGCACCGGTCAGATCCACCAANTTGGCCAGGCAACGGCGAAGGCACGACGCTCAACCTGCCACTACCCGGTGGCTCAGGCGATTACGCNATGANGTGCGCGTTTGATGANGTTATTGCCCCAGCTGCCCAGCGGTTCAAACCTGACATCATCCTCGTTTCAGCCGGGTNCGACNCGCACGCGCTGGACCCGCTGGCGGGGCTGCAGTTCACGACAGGGACGTTCTNCATGCTGGCGGCGAAGATCCGGGAAGTGGCGGCGGAACTGTTCCGCGGGCGGTGCGTCTTCTTCCTGGANGGCGGCTACAACCTGGANTCCTGTCCANCTCNNTGGCCGACACCTTCCGTGCGTTCCTCGGCGAACCCACCTCCCCGCGCGGTTCGACNACCNGCGATGCTCTNCNAAGAACCCACCCNGAAAATCTTGGAAGCCATCCACAAAGGCAAGCACCTCCACTCGCTCTTANCGCGGNGCCCANAAAATTGCAACANTATCTNTNCTTGGCTGCTGAAACTGCTTGCTGATTCTGGTCCACAACTCNAGATCATATTCNTGTCTTG]




>consensus_1488#1
ATTCGNCCGNTGGAACTACCTGGCACCGGTCAGATCCACCAANTTGGCCAGGCAACGGCG
AAGGCACGACGCTCAACCTGCCACTACCCGGTGGCTCAGGCGATTACGCNATGANGTGCG
CGTTTGATGANGTTATTGCCCCAGCTGCCCAGCGGTTCAAACCTGACATCATCCTCGTTT
CAGCCGGGTNCGACNCGCACGCGCTGGACCCGCTGGCGGGGCTGCAGTTCACGACAGGGA
CGTTCTNCATGCTGGCGGCGAAGATCCGGGAAGTGGCGGCGGAACTGTTCCGCGGGCGGT
GCGTCTTCTTCCTGGANGGCGGCTACAACCTGGANTCCTGTCCANCTCNNTGGCCGACAC
CTTCCGTGCGTTCCTCGGCGAACCCACCTCCCCGCGCGGTTCGACNACCNGCGATGCTCT
NCNAAGAACCCACCCNGAAAATCTTGGAAGCCATCCACAAAGGCAAGCACCTCCACTCGC
TCTTANCGCGGNGCCCANAAAATTGCAACANTATCTNTNCTTGGCTGCTGAAACTGCTTG
CTGATTCTGGTCCACAACTCNAGATCATATTCNTGTCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1488#0      GAGAGGGGATTCAGTGAGGAAGGGAGAGAGAGATAGATCCCTGGAGGTTTGCAGGAGGGG 60
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      ATGGAACAGCTGTGGGTGCCATCGCTTCCGATTCTTGGAGGAAGGATATTGCCTATGCTC 120
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      AGGCACTACTGTGGCTTTGGAAGTCATCATCCCTTAACCTGGAGAAGCTTACAAATTACT 180
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      GGAAGAAAACAGAAGCATAATGGGTGTTGGATTGCATACTGCTTACCAAGCCATAATGGA 240
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      ACTTCTATTTCAGACACAAATGGTGTTCGAAAAGACTTAGCTTTGCCTGACAATTTGCTT 300
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      CGTGATGCTCATATTCTCTATTGTACATCTCCTGCCATGGGTCATAACAAGGAAGCGCAT 360
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      CCAGAAACTAACAAAAGAGTTCCTGCAATAGTTGATGCTCTCGAAAAACTGGAGCTTACT 420
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      TCGAAGCATCGTGGTTCACAGGTTCTTGAAATTCAAGATTTCCAACCTGCTTCACTTGAT 480
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      GATATTGCACTAGTTCATTCAAGATCATACATAACTGGACTTGAAAAGGCTATGAGTAGG 540
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      GCTTCAGATGAAGGTTTGATATTCATTGAAGGAACTGGACCTACATATGCTACCCAGACT 600
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      ACTTTCCAAGAATGTCTCCTTTCTGCTGGTGCTGGAATTACATTGGTTGATTCAGTGGTT 660
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      GCAGCATCAAAGTTGGGCCCGAAGCCACCGCTCGGCTTTGCCTTAGTAAGGCCACCAGGA 720
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      CATCATGCTGTTCCTGAAGGTCCCATGGGCTTCTGTGTCTTTGGGAACATTGCAGTGGCA 780
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      GCTCGGTATGCTCAGAATCAACATGGTTTAAAGCGGGTCATGATAATAGATTTTGATGTT 840
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      CACCACGGTAACGGCACATGTGACGCCTTTTATGAGGATCCGGACATATTCTTCCTCTCA 900
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      ACTCATCAGCTTGGAAGCTATCCTGGCACCGGTAAGATCCACCAAGTTGGCCAGGGCAAC 960
consensus_1488#1      ATTCGNCCGNT--GGAACTA-CCTGGCACCGGTCAGATCCACCAANTTGGCCAGG-CAAC 56
                      * **  * * *  * * *** ************ *********** ********* ****

consensus_1488#0      GGCGAGGGCACGACGCTCAACCTGCCACTACCCGGTGGCTCAGGCGATTACGCGATGAGG 1020
consensus_1488#1      GGCGAAGGCACGACGCTCAACCTGCCACTACCCGGTGGCTCAGGCGATTACGCNATGANG 116
                      ***** *********************************************** **** *

consensus_1488#0      TGCGCGTTTGATGAGGTTATTGCCCCAGCTGCCCAGCGGTTCAAACCTGACATCATCCTC 1080
consensus_1488#1      TGCGCGTTTGATGANGTTATTGCCCCAGCTGCCCAGCGGTTCAAACCTGACATCATCCTC 176
                      ************** *********************************************

consensus_1488#0      GTTTCAGCCGGGTACGACGCGCACGCGCTGGACCCGCTGGCGGGGCTGCAGTTCACGACG 1140
consensus_1488#1      GTTTCAGCCGGGTNCGACNCGCACGCGCTGGACCCGCTGGCGGGGCTGCAGTTCACGACA 236
                      ************* **** **************************************** 

consensus_1488#0      GGGACGTTCTACATGCTGGCGGCGAGGATCCGGGAGGTGGCGGCGGAGCTGTGCGGCGGG 1200
consensus_1488#1      GGGACGTTCTNCATGCTGGCGGCGAAGATCCGGGAAGTGGCGGCGGAACTGTTCCGCGGG 296
                      ********** ************** ********* *********** **** * *****

consensus_1488#0      CGGTGCGTCTTCTTCCTGGAGGGCGGCTACAACCTGGAGTCGCTGTCCAGCTCAGTGGCC 1260
consensus_1488#1      CGGTGCGTCTTCTTCCTGGANGGCGGCTACAACCTGGANTC-CTGTCCANCTCNNTGGCC 355
                      ******************** ***************** ** ******* ***  *****

consensus_1488#0      GACACCTTCCGTGCGTTCCTCGGCGAGCCCAGCCTCGCCGCGCGGTTCGACGACCCGGCG 1320
consensus_1488#1      GACACCTTCCGTGCGTTCCTCGGCGAACCCA-CCTCCCCGCGCGGTTCGACNACCNG-CG 413
                      ************************** **** **** ************** *** * **

consensus_1488#0      ATGCTCTACGAGGAGCCCACGCGGAAGATCAGGGAGGCCATCGACAAGGCCAAGCACCTC 1380
consensus_1488#1      ATGCTCTNCNAAGAACCCACCCNGAAAATCTTGGAAGCCATCCACAAAGGCAAGCACCTC 473
                      ******* * * ** ***** * *** ***  *** ****** **** * **********

consensus_1488#0      CACTCGCTCTAAGCGCGGCGCCCAGAAGATTGCAACAGTATCTATACTTGGCTGCTGAAA 1440
consensus_1488#1      CACTCGCTCTTANCGCGGNGCCCANAAAATTGCAACANTATCTNTNCTTGGCTGCTGAAA 533
                      ********** * ***** ***** ** ********* ***** * **************

consensus_1488#0      CTGCTTGCTGATGCTGGTCAACAACTCAAGATCATATTCATGTCTTGTTAGCTTTTGCAC 1500
consensus_1488#1      CTGCTTGCTGATTCTGGTCCACAACTCNAGATCATATTCNTGTCTTG------------- 580
                      ************ ****** ******* *********** *******             

consensus_1488#0      TTTCCAGTGTAGCATTGTACATCGGAAAAGCACGGCATAGTCATTTACATCTTAGTTGCT 1560
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      GTGAATCAGATACATTCGATCGCAAGCTTGTCAATAGTTCAATACCAGTTGTGTAGATTA 1620
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      ATACCAGTACTACTGCGATTACTTGCATCTTTCTACTCCAGTTAGTGTCCAGTGGAACCT 1680
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      GTCGAGCTATCAGCATTTTGTTTTATAATACAAAAGCTGACAT 1723
consensus_1488#1      -------------------------------------------