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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1420 fasta sequence
[TTAATTCTCGCGTCGTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGCGG-GATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGA-TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTGCGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAATGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTGACAAGGCCCTACAAGCTCCCGCTGTTGAAAACATACCTCACAAGACTATCCATGTTATTCAGGACCTTTACAAAGAAGCTGGA-TTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCTTGAAATTTTCCTTCTTGGTGCTGTTGCCAAACTGGGTGCGACTGTTGTTACATATCCTCTTCTAGTTGTGAAGGCAAGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCACATTTGATGCGATCACAAAGATGATACGTTATGAAGG-TTTGT-CAGGGCTTT-ATAAAGGAATGAGCA-CAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATG-ATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTGCTCGTGTAAAGTATACTGTTATGGAAGATTGAAACACTAGAAAATAAGTTGGCAATGAGAATCGCAAGCGCTAGTCATCTGTTCAGATTAAAAAA]
[+] EMBL CB641141 [TTAATTCTCGCGTCGTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGCGG GATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGA TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTGCGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAATGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTGACAAAGCCCTACAAGCTCCCGCTGTTGAAAACATACCTCACAAGACTATCCAT ]
[+] EMBL CB641144 [TTAATTCTCGCGTCGTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGCGG GATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGA TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTGCGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAATGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTGACAAGGCCCTACAAGCTCCCGCTGTTGA ]
[+] EMBL AK101498 [ TCTCGCGTCGTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGCGG GATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGA TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTGCGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAATGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTGACAAGGCCCTACAAGCTCCCGCTGTTGAAAACATACCTCACAAGACTATCCATGTTATTCAGGACCTTTACAAAGAAGCTGGA TTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCTTGAAATTTTCCTTCTTGGTGCTGTTGCCAAACTGGGTGCGACTGTTGTTACATATCCTCTTCTAGTTGTGAAGGCAAGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCACATTTGATGCGATCACAAAGATGATACGTTATGAAGG TTTGT CAGGGCTTT ATAAAGGAATGAGCA CAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATG ATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTGCTCGTGTAAAGTATACTGTTATGGAAGATTGAAACACTAGAAAATAAGTTGGCAATGAGAATCGCAAGCGCTAGTCATC ]
[+] EMBL CF310545 [ GTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGTGTCGCCGGCGCCGGCGGCGG GATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTC ]
[+] EMBL C98586 [ TGTCAGACCACGCTGCCGCGGGGNATCTGNCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGGGG NATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCA CAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAAATGTGCCTGGTGGTGAAG ATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGG CGCGGCTNTTCAGCGA TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGAT ]
[+] EMBL C74844 [ GCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCG CGGCGCCGGCGGCGGTGATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAG AGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATNCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGATTCCAGGAAAGGNATCGGCGATGGATCNGTCGGGATGCTCCAATCC ]
[+] EMBL CF320015 [ GCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGA TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTGCGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAATGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTGACAAGGCCCTACAAGCTCCCGCTGTTGAAAACATACCTCACAAGACTATCCATGTTATTCAGGACCTTTACAAAGAAGCTGGATTTTTTGGGCTTCTGGAAGGGTGTAGTTCCAGCTCTTATTATGGTTAGCAACCCTGCAATCCAAT ]
[+] EMBL C98587 [ CACAAAGATGATACGTTATGAAGGTTTTGTCCAGGTCTTTAATAAAGNAATGAGCACCAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAA TGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATGCATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTGCTCGTGTAAAGTATACTGTTATGGAAGATTGAAACACTAGAAAATAAGTTGGCAATGAGAATCGCAAGCGCTAGTCATCTGTTCAGATTAAAAAA]
[-] EMBL CF320016 [ ATGAAGG TTTGT CAGGGCTTT ATAAAGGAATGAGCA CAAAAATCGTACAAAGCGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATG ATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTGCTCGTGTAAAGTATACTGTTATGGAAGATTGAAACACTAGAAAATAAGTTGGCAAaaaa ]
consensusID : consensus_14880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 584 fasta sequence
[TTGTGTTTCATGATGAGATACTCTATTCTTGCAATTACATGCTGCTGATTACTGGATCCAAGACTAACAGCTGTTCTTATATGGCAAAAAAGGCCTCATTTATTTTTTCCTAGGCCTCATCCCACTTCCTAAACTGTTAGCTCATCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCCTTCATCTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAGTGCTAATGATTCAAACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCACGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCA-TCTGTCATCAGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCATGCAGTAAGCCTTCGGCTCATGGGTTAG]
[+] EMBL CB639215 [TTGTGTTTCATGATGAGATACTCTATTCTTGCAATTACATGCTGCTGATTACTGGATCCAAGACTAACAGCTGTTCTTATATGGCAAAAAAGGCCTCATTTATTTTTTCCTAGGCCTCATCCCACTTCCTAAACTGTTAGCTCATCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCCTTCATCTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAGTGCTAATGATTCAAACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCAGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCA TCTGTCATCAGGTTAGCAACCCTGCAATCC ATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAA ]
[+] EMBL CB638023 [ AGACACTCTATTCTTGCAATTACATGCTGCTGATTACTGGATCCAAGACTAACAGCTGTTCTTATATGGCAAAAAAGGCCTCATTTAGTTTTTCCTAGGCCTCATCCCAGTTCCTAAACTGTTAGCTCATCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCCTTCATCTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGCCAATATGCAAGTGCTAATGATTCAAACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCACGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGCTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTCTCCATGTTTCACTCTGTCATCATGTTAGCAACCCTGCAATCC ]
[+] EMBL CB637708 [ AACTGTAAACTGAGCTTTATTTTTTTGACCCTAAACTGCCGATCAAACCCATCCTTCATCTATGAAAACCAACTAAAACTTGTCCTCCTAAGCACTTCATATACTCAAAATGCAAGTGCTAATGATTCAAACTTTGTATGGGGCATGGCTGATTGACTCCGTTTGGCTGCAGATTCACGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCA TCTGTCATCAGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGA ]
[-] EMBL CB637078 [ TGCGGATAAAACCCATCTTTCATCTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAGTGCTAATGATTCAGACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCAGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCA TCTGTCATCAGGTTAGCAACCCTGCAATCCAATTCATGTAGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTGTCATTTGAAGGGAGCTGATGGACTGACTGCTCATGCAGTAAGCCTTCGGCTCATGGGTTAG]
[+] EMBL CB637341 [ TGACTCCGTTTGGCTGCAGATTCACGACCTTTACAAAGAACCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCCCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCA TCTGTCATCAGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAa ]
consensusID : consensus_14880#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[CATTTAATTTTTCCTAAGCCTCATCCCAGTTCCTAAACTGTTAGCTCAGCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCTTTCTTTTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAGTGCTAATGATTCAGACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCAGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCATCTGTCATCAAGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCTTGAAGTAAGCTTTTGGCTTTTTGGCTTTTCTGGTG]
[+] EMBL CB640221 [CATTTAATTTTTCCTAAGCCTCATCCCAGTTCCTAAACTGTTAGCTCAGCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCTTTCTTTTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAGTGCTAATGATTCAGACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCAGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCATCTGTCATCAAGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCTTGAAGTAAGCTTTTGGCTTTTTGGCTTTTCTGGTG]
consensusID : consensus_14880#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence
[AGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCACATTTGATGCGATCACAAAGATGATACGTTATGAAGGTTTGTCAGGGCTTTATAAAGGAATGAGCACAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATGATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTAAAAAAAAACACAAAAA]
[-] EMBL CF310546 [AGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCACATTTGATGCGATCACAAAGATGATACGTTATGAAGGTTTGTCAGGGCTTTATAAAGGAATGAGCACAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATGATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTAAAAAAAAACACAAAAA]
[+] EMBL AU063142 [ TACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATGATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTAaa ]
consensusID : consensus_14880#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence
[AGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGTACATCGCTGGCCTTTATTCTTTAAACTTCATTCCATTATTTACAGTGAATTCTTATTTCATGAGTGATGTTGCTCCATATCCTGTTTCTGATACTCTTTACTTCTCTTCTGGTAATAATATTTGCTGTCCTCTGACTTTGTTACCAAATACGCTATGCAAATTTTATTGCTTGCAGGCACATTTGATGCGATCACAAACATGATACCTTCTGAACGTTTGCCAGGGCTTCTATAAACGAATGACCACAAAAATCGTACCACCTGTTTCTGCTTCTGCTCTCCTTTTCCTGATTA]
[+] EMBL CB637438 [AGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGTACATCGCTGGCCTTTATTCTTTAAACTTCATTCCATTATTTACAGTGAATTCTTATTTCATGAGTGATGTTGCTCCATATCCTGTTTCTGATACTCTTTACTTCTCTTCTGGTAATAATATTTGCTGTCCTCTGACTTTGTTACCAAATACGCTATGCAAATTTTATTGCTTGCAGGCACATTTGATGCGATCACAAACATGATACCTTCTGAACGTTTGCCAGGGCTTCTATAAACGAATGACCACAAAAATCGTACCACCTGTTTCTGCTTCTGCTCTCCTTTTCCTGATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14880#0 TTAATTCTCGCGTCGTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTG 60
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 CGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGCGGGATCATCGCCC 120
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 AGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCT 180
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 CCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAG 240
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 GGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGG 300
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 GTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGC 360
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 GATCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTG 420
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 CGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAA 480
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 TGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTG 540
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 ACAAGGCCCTACAAGCTCCCGCTGTTGAAAACATACCTCACAAGACTATCCATGTTATTC 600
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 AGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTA 660
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 TTATGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGA 720
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 ------------------------------------------------------------
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 AAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCTTGAAATTTTCC 780
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 -------------------------------------------------TTGTGTTTCAT 11
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 TTCTTGGTGCTGTTGCCAAACTGGGTGCGACTGTTGTTACATATCCTCTTCTAGTTGTGA 840
consensus_14880#3 ------------------------------------------------------------
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 GATGAGATACTCTATTCTTGCAATTACATGCTGCTGATTACTGGATCCAAGACTAACAGC 71
consensus_14880#2 ------------------------------------------------------------
consensus_14880#0 AGGCAAGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCA 900
consensus_14880#3 ------------AGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCA 48
consensus_14880#4 -----AGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGTA 55
consensus_14880#1 TGTTCTTATATGGCAAAAAAGGCCTCATTTATTTTTTCCT-AGGCCTCATCCCACTTCCT 130
consensus_14880#2 -------------------------CATTTAATTTTTCCT-AAGCCTCATCCCAGTTCCT 34
*** * * * * ** * **
consensus_14880#0 CATTTGATGCGATCACAAAGATGATACGTTATGAAGGTTTGTCAGGGCTTTATAAAGGAA 960
consensus_14880#3 CATTTGATGCGATCACAAAGATGATACGTTATGAAGGTTTGTCAGGGCTTTATAAAGGAA 108
consensus_14880#4 CATCGCTGGCCTT-----------TATTCTTTAAACTTCATTCCATTATTTAC-----AG 99
consensus_14880#1 AAACTGTTAGCTCATCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCC---TT 187
consensus_14880#2 AAACTGTTAGCTCAGCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCT---TT 91
* * ** * *
consensus_14880#0 TGAGCACAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGG 1020
consensus_14880#3 TGAGCACAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGG 168
consensus_14880#4 TGAATTCTTATTTCATG---AGTGATGTTGCTCCA--TATCCTGTTTCTGAT-------- 146
consensus_14880#1 CATCTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAG 247
consensus_14880#2 CTTTTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAG 151
* * * * * * * * *
consensus_14880#0 AACTGGTGAAGGGCGCTCGATTATTGGTA--ACCGGCAACACCAGCCTTGTTAAGAAGTT 1078
consensus_14880#3 AACTGGTGAAGGGCGCTCGATTATTGGTA--ACCGGCAACACCAGCCTTGTTAAGAAGTT 226
consensus_14880#4 -ACTCTTTA------CTTCTCTTCTGGTA--A----TAATATTTGCTGTCCTCTGACTTT 193
consensus_14880#1 TGCTAATGATTCAAACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTC 307
consensus_14880#2 TGCTAATGATTCAGACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTC 211
** * * ** * ** * * * *
consensus_14880#0 ACCATCGAAGCCATTAAGATGA--TCTAGG--TTGTACAAGAGTTAGTTCCCTACTTATA 1134
consensus_14880#3 ACCATCGAAGCCATTAAGATGA--TCTAGG--TTGTACAAGAGTTAGTTCCCTACTTATA 282
consensus_14880#4 GTTACCAAATACGCTATGCAAA--TTTTA---TTGCTTGCAGGCACATTTGATGCGATCA 248
consensus_14880#1 ACGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTA 367
consensus_14880#2 AGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTA 271
* * * * * * ** * * * *
consensus_14880#0 CCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATC 1194
consensus_14880#3 CCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATC 342
consensus_14880#4 CAAACATGATACCTTCTGAACGTTTGCCAGGGCTTCTATAAACGAATGACCACAAAAATC 308
consensus_14880#1 TTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATT 427
consensus_14880#2 TTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATT 331
* * * * * * * * **
consensus_14880#0 AAGTTATCTGTGAGACTCTGAT-CGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATG 1253
consensus_14880#3 AAGTTATCTGTGAGACTCTGAT-CGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATG 401
consensus_14880#4 GTACCACCTGT----TTCTGCTTCTGCTCTCCTTTTCCTGATTA---------------- 348
consensus_14880#1 GTTTCCATGTTTCATCTGTCATCAGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGA 487
consensus_14880#2 GTTTCCATGTTTCATCTGTCATCAAGTTAGCAACCCTGCAATCCAATTCATGTTGTACGA 391
* * * * * *
consensus_14880#0 TAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAAT--GATGGTATATATTGGGTA 1311
consensus_14880#3 TAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAAT--GATGGTATATATTGGGTA 459
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 GACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACT 547
consensus_14880#2 GACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACT 451
consensus_14880#0 GGCTATCTCTGTTGCTCGTGTAAAGTATACTGTTATGGAAGATTGAAACACTAGAAAATA 1371
consensus_14880#3 GGCTATCTCTGTTA-----AAAAAAAACACAAAAA------------------------- 489
consensus_14880#4 ------------------------------------------------------------
consensus_14880#1 GACTGCTCATGCAGTAAGCCTTCGGCTCATGGGTTAG----------------------- 584
consensus_14880#2 GACTGCTCTTGAAGTAAGCTTTTGGCTTTTTGGCTTTTCTGGTG---------------- 495
consensus_14880#0 AGTTGGCAATGAGAATCGCAAGCGCTAGTCATCTGTTCAGATTAAAAAA 1420
consensus_14880#3 -------------------------------------------------
consensus_14880#4 -------------------------------------------------
consensus_14880#1 -------------------------------------------------
consensus_14880#2 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||